data_3PKH
#
_model_server_result.job_id            mTYu72tPZQjMnd5PGC1pjw 
_model_server_result.datetime_utc      '2024-10-12 10:18:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pkh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    3PKH 
#
_exptl.entry_id    3PKH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              131.293 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            XENON 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3PKH 
_cell.length_a            80.346 
_cell.length_b            96.337 
_cell.length_c            105.624 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PKH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 80.346 96.337 0 
3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 80.346 0 105.624 
4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 96.337 105.624 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
metalc ? metalc1 A O ILE 89 A ILE 88 1_555 C NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc2 A O TYR 92 A TYR 91 1_555 C NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc3 A O ILE 95 A ILE 94 1_555 C NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc4 A OE1 GLU 137 A GLU 136 1_555 C NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? 
metalc ? metalc5 C NA NA . A NA 303 1_555 F O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
#
_chem_comp.formula           Xe 
_chem_comp.formula_weight    131.293 
_chem_comp.id                XE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              XENON 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3PKH 
_atom_sites.fract_transf_matrix[1][1]    0.012446 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01038 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009468 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AZA A 1 302 302 AZA AZA . 
C 3 NA A 1 303 303 NA NA . 
D 4 XE A 1 801 801 XE XE . 
E 4 XE A 1 802 802 XE XE . 
F 5 HOH A 1 401 401 HOH HOH . 
F 5 HOH A 2 402 402 HOH HOH . 
F 5 HOH A 3 403 403 HOH HOH . 
F 5 HOH A 4 404 404 HOH HOH . 
F 5 HOH A 5 405 405 HOH HOH . 
F 5 HOH A 6 406 406 HOH HOH . 
F 5 HOH A 7 407 407 HOH HOH . 
F 5 HOH A 8 408 408 HOH HOH . 
F 5 HOH A 9 409 409 HOH HOH . 
F 5 HOH A 10 410 410 HOH HOH . 
F 5 HOH A 11 411 411 HOH HOH . 
F 5 HOH A 12 412 412 HOH HOH . 
F 5 HOH A 13 413 413 HOH HOH . 
F 5 HOH A 14 414 414 HOH HOH . 
F 5 HOH A 15 415 415 HOH HOH . 
F 5 HOH A 16 416 416 HOH HOH . 
F 5 HOH A 17 417 417 HOH HOH . 
F 5 HOH A 18 418 418 HOH HOH . 
F 5 HOH A 19 419 419 HOH HOH . 
F 5 HOH A 20 420 420 HOH HOH . 
F 5 HOH A 21 421 421 HOH HOH . 
F 5 HOH A 22 422 422 HOH HOH . 
F 5 HOH A 23 423 423 HOH HOH . 
F 5 HOH A 24 424 424 HOH HOH . 
F 5 HOH A 25 425 425 HOH HOH . 
F 5 HOH A 26 426 426 HOH HOH . 
F 5 HOH A 27 427 427 HOH HOH . 
F 5 HOH A 28 428 428 HOH HOH . 
F 5 HOH A 29 429 429 HOH HOH . 
F 5 HOH A 30 430 430 HOH HOH . 
F 5 HOH A 31 431 431 HOH HOH . 
F 5 HOH A 32 432 432 HOH HOH . 
F 5 HOH A 33 433 433 HOH HOH . 
F 5 HOH A 34 434 434 HOH HOH . 
F 5 HOH A 35 435 435 HOH HOH . 
F 5 HOH A 36 436 436 HOH HOH . 
F 5 HOH A 37 437 437 HOH HOH . 
F 5 HOH A 38 438 438 HOH HOH . 
F 5 HOH A 39 439 439 HOH HOH . 
F 5 HOH A 40 440 440 HOH HOH . 
F 5 HOH A 41 441 441 HOH HOH . 
F 5 HOH A 42 442 442 HOH HOH . 
F 5 HOH A 43 443 443 HOH HOH . 
F 5 HOH A 44 444 444 HOH HOH . 
F 5 HOH A 45 445 445 HOH HOH . 
F 5 HOH A 46 446 446 HOH HOH . 
F 5 HOH A 47 447 447 HOH HOH . 
F 5 HOH A 48 448 448 HOH HOH . 
F 5 HOH A 49 449 449 HOH HOH . 
F 5 HOH A 50 450 450 HOH HOH . 
F 5 HOH A 51 451 451 HOH HOH . 
F 5 HOH A 52 452 452 HOH HOH . 
F 5 HOH A 53 453 453 HOH HOH . 
F 5 HOH A 54 454 454 HOH HOH . 
F 5 HOH A 55 455 455 HOH HOH . 
F 5 HOH A 56 456 456 HOH HOH . 
F 5 HOH A 57 457 457 HOH HOH . 
F 5 HOH A 58 458 458 HOH HOH . 
F 5 HOH A 59 459 459 HOH HOH . 
F 5 HOH A 60 460 460 HOH HOH . 
F 5 HOH A 61 461 461 HOH HOH . 
F 5 HOH A 62 462 462 HOH HOH . 
F 5 HOH A 63 463 463 HOH HOH . 
F 5 HOH A 64 464 464 HOH HOH . 
F 5 HOH A 65 465 465 HOH HOH . 
F 5 HOH A 66 466 466 HOH HOH . 
F 5 HOH A 67 467 467 HOH HOH . 
F 5 HOH A 68 468 468 HOH HOH . 
F 5 HOH A 69 469 469 HOH HOH . 
F 5 HOH A 70 470 470 HOH HOH . 
F 5 HOH A 71 471 471 HOH HOH . 
F 5 HOH A 72 472 472 HOH HOH . 
F 5 HOH A 73 473 473 HOH HOH . 
F 5 HOH A 74 474 474 HOH HOH . 
F 5 HOH A 75 475 475 HOH HOH . 
F 5 HOH A 76 476 476 HOH HOH . 
F 5 HOH A 77 477 477 HOH HOH . 
F 5 HOH A 78 478 478 HOH HOH . 
F 5 HOH A 79 480 480 HOH HOH . 
F 5 HOH A 80 481 481 HOH HOH . 
F 5 HOH A 81 482 482 HOH HOH . 
F 5 HOH A 82 483 483 HOH HOH . 
F 5 HOH A 83 484 484 HOH HOH . 
F 5 HOH A 84 485 485 HOH HOH . 
F 5 HOH A 85 486 486 HOH HOH . 
F 5 HOH A 86 487 487 HOH HOH . 
F 5 HOH A 87 488 488 HOH HOH . 
F 5 HOH A 88 489 489 HOH HOH . 
F 5 HOH A 89 490 490 HOH HOH . 
F 5 HOH A 90 491 491 HOH HOH . 
F 5 HOH A 91 492 492 HOH HOH . 
F 5 HOH A 92 493 493 HOH HOH . 
F 5 HOH A 93 494 494 HOH HOH . 
F 5 HOH A 94 495 495 HOH HOH . 
F 5 HOH A 95 496 496 HOH HOH . 
F 5 HOH A 96 497 497 HOH HOH . 
F 5 HOH A 97 498 498 HOH HOH . 
F 5 HOH A 98 499 499 HOH HOH . 
F 5 HOH A 99 500 500 HOH HOH . 
F 5 HOH A 100 501 501 HOH HOH . 
F 5 HOH A 101 502 502 HOH HOH . 
F 5 HOH A 102 503 503 HOH HOH . 
F 5 HOH A 103 504 504 HOH HOH . 
F 5 HOH A 104 505 505 HOH HOH . 
F 5 HOH A 105 506 506 HOH HOH . 
F 5 HOH A 106 507 507 HOH HOH . 
F 5 HOH A 107 508 508 HOH HOH . 
F 5 HOH A 108 509 509 HOH HOH . 
F 5 HOH A 109 510 510 HOH HOH . 
F 5 HOH A 110 511 511 HOH HOH . 
F 5 HOH A 111 512 512 HOH HOH . 
F 5 HOH A 112 513 513 HOH HOH . 
F 5 HOH A 113 514 514 HOH HOH . 
F 5 HOH A 114 516 516 HOH HOH . 
F 5 HOH A 115 518 518 HOH HOH . 
F 5 HOH A 116 519 519 HOH HOH . 
F 5 HOH A 117 520 520 HOH HOH . 
F 5 HOH A 118 521 521 HOH HOH . 
F 5 HOH A 119 522 522 HOH HOH . 
F 5 HOH A 120 523 523 HOH HOH . 
F 5 HOH A 121 524 524 HOH HOH . 
F 5 HOH A 122 525 525 HOH HOH . 
F 5 HOH A 123 526 526 HOH HOH . 
F 5 HOH A 124 527 527 HOH HOH . 
F 5 HOH A 125 528 528 HOH HOH . 
F 5 HOH A 126 529 529 HOH HOH . 
F 5 HOH A 127 530 530 HOH HOH . 
F 5 HOH A 128 532 532 HOH HOH . 
F 5 HOH A 129 533 533 HOH HOH . 
F 5 HOH A 130 534 534 HOH HOH . 
F 5 HOH A 131 535 535 HOH HOH . 
F 5 HOH A 132 536 536 HOH HOH . 
F 5 HOH A 133 537 537 HOH HOH . 
F 5 HOH A 134 538 538 HOH HOH . 
F 5 HOH A 135 539 539 HOH HOH . 
F 5 HOH A 136 540 540 HOH HOH . 
F 5 HOH A 137 541 541 HOH HOH . 
F 5 HOH A 138 542 542 HOH HOH . 
F 5 HOH A 139 543 543 HOH HOH . 
F 5 HOH A 140 544 544 HOH HOH . 
F 5 HOH A 141 545 545 HOH HOH . 
F 5 HOH A 142 546 546 HOH HOH . 
F 5 HOH A 143 547 547 HOH HOH . 
F 5 HOH A 144 550 550 HOH HOH . 
F 5 HOH A 145 554 554 HOH HOH . 
F 5 HOH A 146 558 558 HOH HOH . 
F 5 HOH A 147 559 559 HOH HOH . 
F 5 HOH A 148 562 562 HOH HOH . 
F 5 HOH A 149 564 564 HOH HOH . 
F 5 HOH A 150 568 568 HOH HOH . 
F 5 HOH A 151 570 570 HOH HOH . 
F 5 HOH A 152 577 577 HOH HOH . 
F 5 HOH A 153 579 579 HOH HOH . 
F 5 HOH A 154 580 580 HOH HOH . 
F 5 HOH A 155 584 584 HOH HOH . 
F 5 HOH A 156 587 587 HOH HOH . 
F 5 HOH A 157 588 588 HOH HOH . 
F 5 HOH A 158 589 589 HOH HOH . 
F 5 HOH A 159 590 590 HOH HOH . 
F 5 HOH A 160 591 591 HOH HOH . 
F 5 HOH A 161 594 594 HOH HOH . 
F 5 HOH A 162 595 595 HOH HOH . 
F 5 HOH A 163 598 598 HOH HOH . 
F 5 HOH A 164 599 599 HOH HOH . 
F 5 HOH A 165 600 600 HOH HOH . 
F 5 HOH A 166 603 603 HOH HOH . 
F 5 HOH A 167 604 604 HOH HOH . 
F 5 HOH A 168 605 605 HOH HOH . 
F 5 HOH A 169 606 606 HOH HOH . 
F 5 HOH A 170 607 607 HOH HOH . 
F 5 HOH A 171 610 610 HOH HOH . 
F 5 HOH A 172 611 611 HOH HOH . 
F 5 HOH A 173 612 612 HOH HOH . 
F 5 HOH A 174 614 614 HOH HOH . 
F 5 HOH A 175 632 632 HOH HOH . 
F 5 HOH A 176 636 636 HOH HOH . 
F 5 HOH A 177 660 660 HOH HOH . 
F 5 HOH A 178 663 663 HOH HOH . 
F 5 HOH A 179 667 667 HOH HOH . 
F 5 HOH A 180 668 668 HOH HOH . 
F 5 HOH A 181 670 670 HOH HOH . 
F 5 HOH A 182 684 684 HOH HOH . 
F 5 HOH A 183 689 689 HOH HOH . 
F 5 HOH A 184 693 693 HOH HOH . 
F 5 HOH A 185 698 698 HOH HOH . 
F 5 HOH A 186 699 699 HOH HOH . 
F 5 HOH A 187 702 702 HOH HOH . 
F 5 HOH A 188 703 703 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           XE 
_atom_site.label_atom_id         XE 
_atom_site.label_comp_id         XE 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               23.898 
_atom_site.Cartn_y               34.245 
_atom_site.Cartn_z               38.925 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        33.34 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          XE 
_atom_site.auth_comp_id          XE 
_atom_site.auth_seq_id           801 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#