data_3PKO
#
_model_server_result.job_id            hBI-j_l2M5FNPKpBVmM9EA 
_model_server_result.datetime_utc      '2024-11-12 21:06:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pko 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":327}' 
#
_entry.id    3PKO 
#
_exptl.entry_id    3PKO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3PKO 
_cell.length_a            50.097 
_cell.length_b            106.705 
_cell.length_c            132.604 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PKO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 149 n n 
C1 C2 GOL sing 150 n n 
C1 H11 GOL sing 151 n n 
C1 H12 GOL sing 152 n n 
O1 HO1 GOL sing 153 n n 
C2 O2 GOL sing 154 n n 
C2 C3 GOL sing 155 n n 
C2 H2 GOL sing 156 n n 
O2 HO2 GOL sing 157 n n 
C3 O3 GOL sing 158 n n 
C3 H31 GOL sing 159 n n 
C3 H32 GOL sing 160 n n 
O3 HO3 GOL sing 161 n n 
#
_atom_sites.entry_id                     3PKO 
_atom_sites.fract_transf_matrix[1][1]    0.019961 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009372 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007541 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CIT A 1 326 1 CIT CIT . 
D 3 GOL A 1 327 1 GOL GOL . 
E 4 HOH A 1 328 1 HOH HOH . 
E 4 HOH A 2 329 2 HOH HOH . 
E 4 HOH A 3 330 3 HOH HOH . 
E 4 HOH A 4 331 4 HOH HOH . 
E 4 HOH A 5 332 7 HOH HOH . 
E 4 HOH A 6 333 18 HOH HOH . 
E 4 HOH A 7 334 20 HOH HOH . 
E 4 HOH A 8 335 21 HOH HOH . 
E 4 HOH A 9 336 25 HOH HOH . 
E 4 HOH A 10 337 27 HOH HOH . 
E 4 HOH A 11 338 28 HOH HOH . 
E 4 HOH A 12 339 33 HOH HOH . 
E 4 HOH A 13 340 36 HOH HOH . 
E 4 HOH A 14 341 38 HOH HOH . 
E 4 HOH A 15 342 42 HOH HOH . 
E 4 HOH A 16 343 44 HOH HOH . 
E 4 HOH A 17 344 46 HOH HOH . 
E 4 HOH A 18 345 47 HOH HOH . 
E 4 HOH A 19 346 48 HOH HOH . 
E 4 HOH A 20 347 50 HOH HOH . 
E 4 HOH A 21 348 52 HOH HOH . 
E 4 HOH A 22 349 60 HOH HOH . 
E 4 HOH A 23 350 61 HOH HOH . 
E 4 HOH A 24 351 65 HOH HOH . 
E 4 HOH A 25 352 66 HOH HOH . 
E 4 HOH A 26 353 67 HOH HOH . 
E 4 HOH A 27 354 69 HOH HOH . 
E 4 HOH A 28 355 70 HOH HOH . 
E 4 HOH A 29 356 74 HOH HOH . 
E 4 HOH A 30 357 75 HOH HOH . 
E 4 HOH A 31 358 76 HOH HOH . 
E 4 HOH A 32 359 77 HOH HOH . 
E 4 HOH A 33 360 78 HOH HOH . 
E 4 HOH A 34 361 86 HOH HOH . 
E 4 HOH A 35 362 90 HOH HOH . 
E 4 HOH A 36 363 91 HOH HOH . 
E 4 HOH A 37 364 95 HOH HOH . 
E 4 HOH A 38 365 97 HOH HOH . 
E 4 HOH A 39 366 99 HOH HOH . 
E 4 HOH A 40 367 100 HOH HOH . 
E 4 HOH A 41 368 104 HOH HOH . 
E 4 HOH A 42 369 107 HOH HOH . 
E 4 HOH A 43 370 108 HOH HOH . 
E 4 HOH A 44 371 110 HOH HOH . 
E 4 HOH A 45 372 111 HOH HOH . 
E 4 HOH A 46 373 113 HOH HOH . 
E 4 HOH A 47 374 114 HOH HOH . 
E 4 HOH A 48 375 119 HOH HOH . 
E 4 HOH A 49 376 120 HOH HOH . 
E 4 HOH A 50 377 121 HOH HOH . 
E 4 HOH A 51 378 123 HOH HOH . 
E 4 HOH A 52 379 131 HOH HOH . 
E 4 HOH A 53 380 133 HOH HOH . 
E 4 HOH A 54 381 134 HOH HOH . 
E 4 HOH A 55 382 140 HOH HOH . 
E 4 HOH A 56 383 141 HOH HOH . 
E 4 HOH A 57 384 143 HOH HOH . 
E 4 HOH A 58 385 146 HOH HOH . 
E 4 HOH A 59 386 149 HOH HOH . 
E 4 HOH A 60 387 150 HOH HOH . 
E 4 HOH A 61 388 151 HOH HOH . 
E 4 HOH A 62 389 153 HOH HOH . 
E 4 HOH A 63 390 158 HOH HOH . 
E 4 HOH A 64 391 160 HOH HOH . 
E 4 HOH A 65 392 161 HOH HOH . 
E 4 HOH A 66 393 163 HOH HOH . 
E 4 HOH A 67 394 164 HOH HOH . 
E 4 HOH A 68 396 167 HOH HOH . 
E 4 HOH A 69 397 168 HOH HOH . 
E 4 HOH A 70 398 172 HOH HOH . 
E 4 HOH A 71 399 173 HOH HOH . 
E 4 HOH A 72 400 175 HOH HOH . 
E 4 HOH A 73 401 178 HOH HOH . 
E 4 HOH A 74 402 179 HOH HOH . 
E 4 HOH A 75 403 183 HOH HOH . 
E 4 HOH A 76 404 186 HOH HOH . 
E 4 HOH A 77 405 187 HOH HOH . 
E 4 HOH A 78 406 191 HOH HOH . 
E 4 HOH A 79 407 195 HOH HOH . 
E 4 HOH A 80 408 199 HOH HOH . 
E 4 HOH A 81 409 201 HOH HOH . 
E 4 HOH A 82 410 202 HOH HOH . 
E 4 HOH A 83 411 213 HOH HOH . 
E 4 HOH A 84 412 214 HOH HOH . 
E 4 HOH A 85 413 215 HOH HOH . 
E 4 HOH A 86 414 216 HOH HOH . 
E 4 HOH A 87 415 217 HOH HOH . 
E 4 HOH A 88 416 218 HOH HOH . 
E 4 HOH A 89 417 219 HOH HOH . 
E 4 HOH A 90 418 220 HOH HOH . 
E 4 HOH A 91 419 221 HOH HOH . 
E 4 HOH A 92 420 222 HOH HOH . 
E 4 HOH A 93 421 223 HOH HOH . 
E 4 HOH A 94 422 224 HOH HOH . 
E 4 HOH A 95 423 225 HOH HOH . 
E 4 HOH A 96 424 226 HOH HOH . 
E 4 HOH A 97 425 227 HOH HOH . 
E 4 HOH A 98 426 228 HOH HOH . 
E 4 HOH A 99 427 229 HOH HOH . 
E 4 HOH A 100 428 230 HOH HOH . 
E 4 HOH A 101 429 232 HOH HOH . 
E 4 HOH A 102 430 233 HOH HOH . 
E 4 HOH A 103 431 238 HOH HOH . 
E 4 HOH A 104 432 239 HOH HOH . 
E 4 HOH A 105 433 257 HOH HOH . 
E 4 HOH A 106 434 258 HOH HOH . 
E 4 HOH A 107 435 269 HOH HOH . 
E 4 HOH A 108 436 270 HOH HOH . 
E 4 HOH A 109 437 271 HOH HOH . 
E 4 HOH A 110 438 272 HOH HOH . 
E 4 HOH A 111 439 273 HOH HOH . 
E 4 HOH A 112 440 274 HOH HOH . 
E 4 HOH A 113 441 275 HOH HOH . 
E 4 HOH A 114 442 277 HOH HOH . 
E 4 HOH A 115 443 278 HOH HOH . 
E 4 HOH A 116 444 279 HOH HOH . 
E 4 HOH A 117 445 281 HOH HOH . 
E 4 HOH A 118 446 283 HOH HOH . 
E 4 HOH A 119 447 285 HOH HOH . 
E 4 HOH A 120 448 286 HOH HOH . 
E 4 HOH A 121 449 289 HOH HOH . 
F 4 HOH B 1 326 8 HOH HOH . 
F 4 HOH B 2 327 9 HOH HOH . 
F 4 HOH B 3 328 10 HOH HOH . 
F 4 HOH B 4 329 11 HOH HOH . 
F 4 HOH B 5 330 12 HOH HOH . 
F 4 HOH B 6 331 13 HOH HOH . 
F 4 HOH B 7 332 15 HOH HOH . 
F 4 HOH B 8 333 16 HOH HOH . 
F 4 HOH B 9 334 17 HOH HOH . 
F 4 HOH B 10 335 19 HOH HOH . 
F 4 HOH B 11 336 22 HOH HOH . 
F 4 HOH B 12 337 23 HOH HOH . 
F 4 HOH B 13 338 24 HOH HOH . 
F 4 HOH B 14 339 26 HOH HOH . 
F 4 HOH B 15 340 29 HOH HOH . 
F 4 HOH B 16 341 30 HOH HOH . 
F 4 HOH B 17 342 31 HOH HOH . 
F 4 HOH B 18 343 32 HOH HOH . 
F 4 HOH B 19 344 34 HOH HOH . 
F 4 HOH B 20 345 35 HOH HOH . 
F 4 HOH B 21 346 39 HOH HOH . 
F 4 HOH B 22 347 41 HOH HOH . 
F 4 HOH B 23 348 43 HOH HOH . 
F 4 HOH B 24 349 45 HOH HOH . 
F 4 HOH B 25 350 53 HOH HOH . 
F 4 HOH B 26 351 55 HOH HOH . 
F 4 HOH B 27 352 56 HOH HOH . 
F 4 HOH B 28 353 58 HOH HOH . 
F 4 HOH B 29 354 59 HOH HOH . 
F 4 HOH B 30 355 62 HOH HOH . 
F 4 HOH B 31 356 64 HOH HOH . 
F 4 HOH B 32 357 71 HOH HOH . 
F 4 HOH B 33 358 72 HOH HOH . 
F 4 HOH B 34 359 73 HOH HOH . 
F 4 HOH B 35 360 79 HOH HOH . 
F 4 HOH B 36 361 80 HOH HOH . 
F 4 HOH B 37 362 81 HOH HOH . 
F 4 HOH B 38 363 82 HOH HOH . 
F 4 HOH B 39 364 84 HOH HOH . 
F 4 HOH B 40 365 85 HOH HOH . 
F 4 HOH B 41 366 87 HOH HOH . 
F 4 HOH B 42 367 88 HOH HOH . 
F 4 HOH B 43 368 92 HOH HOH . 
F 4 HOH B 44 369 93 HOH HOH . 
F 4 HOH B 45 370 94 HOH HOH . 
F 4 HOH B 46 371 96 HOH HOH . 
F 4 HOH B 47 372 98 HOH HOH . 
F 4 HOH B 48 373 101 HOH HOH . 
F 4 HOH B 49 374 103 HOH HOH . 
F 4 HOH B 50 375 105 HOH HOH . 
F 4 HOH B 51 376 106 HOH HOH . 
F 4 HOH B 52 377 109 HOH HOH . 
F 4 HOH B 53 378 112 HOH HOH . 
F 4 HOH B 54 379 115 HOH HOH . 
F 4 HOH B 55 380 116 HOH HOH . 
F 4 HOH B 56 381 117 HOH HOH . 
F 4 HOH B 57 382 118 HOH HOH . 
F 4 HOH B 58 383 122 HOH HOH . 
F 4 HOH B 59 384 124 HOH HOH . 
F 4 HOH B 60 385 125 HOH HOH . 
F 4 HOH B 61 386 126 HOH HOH . 
F 4 HOH B 62 387 127 HOH HOH . 
F 4 HOH B 63 388 130 HOH HOH . 
F 4 HOH B 64 389 132 HOH HOH . 
F 4 HOH B 65 390 136 HOH HOH . 
F 4 HOH B 66 391 137 HOH HOH . 
F 4 HOH B 67 392 138 HOH HOH . 
F 4 HOH B 68 393 139 HOH HOH . 
F 4 HOH B 69 394 142 HOH HOH . 
F 4 HOH B 70 395 165 HOH HOH . 
F 4 HOH B 71 396 145 HOH HOH . 
F 4 HOH B 72 397 147 HOH HOH . 
F 4 HOH B 73 398 148 HOH HOH . 
F 4 HOH B 74 399 152 HOH HOH . 
F 4 HOH B 75 400 154 HOH HOH . 
F 4 HOH B 76 401 155 HOH HOH . 
F 4 HOH B 77 402 156 HOH HOH . 
F 4 HOH B 78 403 157 HOH HOH . 
F 4 HOH B 79 404 162 HOH HOH . 
F 4 HOH B 80 405 166 HOH HOH . 
F 4 HOH B 81 406 169 HOH HOH . 
F 4 HOH B 82 407 171 HOH HOH . 
F 4 HOH B 83 408 174 HOH HOH . 
F 4 HOH B 84 409 176 HOH HOH . 
F 4 HOH B 85 410 177 HOH HOH . 
F 4 HOH B 86 411 180 HOH HOH . 
F 4 HOH B 87 412 181 HOH HOH . 
F 4 HOH B 88 413 182 HOH HOH . 
F 4 HOH B 89 414 184 HOH HOH . 
F 4 HOH B 90 415 188 HOH HOH . 
F 4 HOH B 91 416 189 HOH HOH . 
F 4 HOH B 92 417 190 HOH HOH . 
F 4 HOH B 93 418 193 HOH HOH . 
F 4 HOH B 94 419 194 HOH HOH . 
F 4 HOH B 95 420 198 HOH HOH . 
F 4 HOH B 96 421 203 HOH HOH . 
F 4 HOH B 97 422 204 HOH HOH . 
F 4 HOH B 98 423 205 HOH HOH . 
F 4 HOH B 99 424 206 HOH HOH . 
F 4 HOH B 100 425 207 HOH HOH . 
F 4 HOH B 101 426 208 HOH HOH . 
F 4 HOH B 102 427 209 HOH HOH . 
F 4 HOH B 103 428 210 HOH HOH . 
F 4 HOH B 104 429 211 HOH HOH . 
F 4 HOH B 105 430 234 HOH HOH . 
F 4 HOH B 106 431 235 HOH HOH . 
F 4 HOH B 107 432 236 HOH HOH . 
F 4 HOH B 108 433 237 HOH HOH . 
F 4 HOH B 109 434 241 HOH HOH . 
F 4 HOH B 110 435 242 HOH HOH . 
F 4 HOH B 111 436 243 HOH HOH . 
F 4 HOH B 112 437 244 HOH HOH . 
F 4 HOH B 113 438 245 HOH HOH . 
F 4 HOH B 114 439 246 HOH HOH . 
F 4 HOH B 115 440 247 HOH HOH . 
F 4 HOH B 116 441 248 HOH HOH . 
F 4 HOH B 117 442 249 HOH HOH . 
F 4 HOH B 118 443 250 HOH HOH . 
F 4 HOH B 119 444 251 HOH HOH . 
F 4 HOH B 120 445 252 HOH HOH . 
F 4 HOH B 121 446 253 HOH HOH . 
F 4 HOH B 122 447 255 HOH HOH . 
F 4 HOH B 123 448 256 HOH HOH . 
F 4 HOH B 124 449 259 HOH HOH . 
F 4 HOH B 125 450 260 HOH HOH . 
F 4 HOH B 126 451 261 HOH HOH . 
F 4 HOH B 127 452 262 HOH HOH . 
F 4 HOH B 128 453 263 HOH HOH . 
F 4 HOH B 129 454 264 HOH HOH . 
F 4 HOH B 130 455 265 HOH HOH . 
F 4 HOH B 131 456 266 HOH HOH . 
F 4 HOH B 132 457 267 HOH HOH . 
F 4 HOH B 133 458 268 HOH HOH . 
F 4 HOH B 134 459 284 HOH HOH . 
F 4 HOH B 135 460 287 HOH HOH . 
F 4 HOH B 136 461 288 HOH HOH . 
F 4 HOH B 137 462 144 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 7.686 45.19 -28.697 1 40.17 ? C1 GOL 327 A 1 
HETATM 2 O O1 GOL . . . D 3 6.327 45.105 -28.327 1 38.9 ? O1 GOL 327 A 1 
HETATM 3 C C2 GOL . . . D 3 7.794 45.639 -30.149 1 51.85 ? C2 GOL 327 A 1 
HETATM 4 O O2 GOL . . . D 3 7.368 44.585 -30.977 1 65.47 ? O2 GOL 327 A 1 
HETATM 5 C C3 GOL . . . D 3 9.264 45.855 -30.446 1 42.4 ? C3 GOL 327 A 1 
HETATM 6 O O3 GOL . . . D 3 9.538 45.777 -31.829 1 38.05 ? O3 GOL 327 A 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#