data_3PKQ # _model_server_result.job_id x01n8lgtveOu2rpgMhvPWg _model_server_result.datetime_utc '2025-04-03 03:28:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pkq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 3PKQ # _exptl.entry_id 3PKQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PKQ _cell.length_a 109.4 _cell.length_b 109.4 _cell.length_c 110.075 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PKQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 1 1 A,B,E,F,G,H,I,J,K,Q,R 2 1 C,D,L,M,N,O,P,S,T 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 J N N ? 3 K N N ? 3 M N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 111 A ASP 111 1_555 F MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc2 A OD1 ASP 226 A ASP 226 1_555 F MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc3 E O2A DGT . A DGT 500 1_555 F MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc4 B OD2 ASP 111 B ASP 111 1_555 J MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc5 B OD1 ASP 226 B ASP 226 1_555 J MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc6 I O2A DGT . B DGT 500 1_555 J MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc7 I O2B DGT . B DGT 500 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc8 I O1A DGT . B DGT 500 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc9 I O3G DGT . B DGT 500 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc10 C OD2 ASP 111 C ASP 111 1_555 M MG MG . C MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc11 C OD1 ASP 226 C ASP 226 1_555 M MG MG . C MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc12 L O2A DGT . C DGT 500 1_555 M MG MG . C MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc13 O O2B DGT . D DGT 500 1_555 P MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc14 O O1A DGT . D DGT 500 1_555 P MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc15 O O3G DGT . D DGT 500 1_555 P MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3PKQ _atom_sites.fract_transf_matrix[1][1] 0.009141 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009085 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 DGT A 1 500 500 DGT DGT . F 3 MG A 1 501 501 MG MG . G 4 PEG A 1 293 1 PEG PEG . H 4 PEG A 1 294 1 PEG PEG . I 2 DGT B 1 500 500 DGT DGT . J 3 MG B 1 501 501 MG MG . K 3 MG B 1 502 502 MG MG . L 2 DGT C 1 500 500 DGT DGT . M 3 MG C 1 501 501 MG MG . N 4 PEG C 1 293 1 PEG PEG . O 2 DGT D 1 500 500 DGT DGT . P 3 MG D 1 502 502 MG MG . Q 5 HOH A 1 295 3 HOH HOH . Q 5 HOH A 2 296 4 HOH HOH . Q 5 HOH A 3 297 5 HOH HOH . Q 5 HOH A 4 298 6 HOH HOH . Q 5 HOH A 5 299 7 HOH HOH . Q 5 HOH A 6 300 8 HOH HOH . Q 5 HOH A 7 301 9 HOH HOH . Q 5 HOH A 8 302 10 HOH HOH . Q 5 HOH A 9 303 14 HOH HOH . Q 5 HOH A 10 304 17 HOH HOH . Q 5 HOH A 11 305 21 HOH HOH . Q 5 HOH A 12 306 23 HOH HOH . Q 5 HOH A 13 307 24 HOH HOH . Q 5 HOH A 14 308 25 HOH HOH . Q 5 HOH A 15 309 28 HOH HOH . Q 5 HOH A 16 310 29 HOH HOH . Q 5 HOH A 17 311 30 HOH HOH . Q 5 HOH A 18 312 32 HOH HOH . Q 5 HOH A 19 313 33 HOH HOH . Q 5 HOH A 20 314 34 HOH HOH . Q 5 HOH A 21 315 36 HOH HOH . Q 5 HOH A 22 316 40 HOH HOH . Q 5 HOH A 23 317 41 HOH HOH . Q 5 HOH A 24 318 42 HOH HOH . Q 5 HOH A 25 319 44 HOH HOH . Q 5 HOH A 26 320 45 HOH HOH . Q 5 HOH A 27 321 52 HOH HOH . Q 5 HOH A 28 322 54 HOH HOH . Q 5 HOH A 29 323 62 HOH HOH . Q 5 HOH A 30 324 67 HOH HOH . Q 5 HOH A 31 325 70 HOH HOH . Q 5 HOH A 32 326 74 HOH HOH . Q 5 HOH A 33 327 76 HOH HOH . Q 5 HOH A 34 328 77 HOH HOH . Q 5 HOH A 35 329 79 HOH HOH . Q 5 HOH A 36 330 83 HOH HOH . Q 5 HOH A 37 331 84 HOH HOH . Q 5 HOH A 38 332 87 HOH HOH . Q 5 HOH A 39 333 90 HOH HOH . Q 5 HOH A 40 334 91 HOH HOH . Q 5 HOH A 41 335 102 HOH HOH . Q 5 HOH A 42 336 104 HOH HOH . Q 5 HOH A 43 337 107 HOH HOH . Q 5 HOH A 44 338 114 HOH HOH . Q 5 HOH A 45 339 115 HOH HOH . Q 5 HOH A 46 340 116 HOH HOH . Q 5 HOH A 47 341 122 HOH HOH . Q 5 HOH A 48 342 123 HOH HOH . Q 5 HOH A 49 343 124 HOH HOH . Q 5 HOH A 50 344 125 HOH HOH . Q 5 HOH A 51 345 126 HOH HOH . Q 5 HOH A 52 346 127 HOH HOH . Q 5 HOH A 53 347 130 HOH HOH . Q 5 HOH A 54 348 132 HOH HOH . Q 5 HOH A 55 349 133 HOH HOH . Q 5 HOH A 56 350 135 HOH HOH . Q 5 HOH A 57 351 139 HOH HOH . Q 5 HOH A 58 352 141 HOH HOH . Q 5 HOH A 59 353 144 HOH HOH . Q 5 HOH A 60 354 148 HOH HOH . Q 5 HOH A 61 355 152 HOH HOH . Q 5 HOH A 62 356 161 HOH HOH . Q 5 HOH A 63 357 162 HOH HOH . Q 5 HOH A 64 358 167 HOH HOH . Q 5 HOH A 65 359 173 HOH HOH . Q 5 HOH A 66 360 174 HOH HOH . Q 5 HOH A 67 361 178 HOH HOH . Q 5 HOH A 68 362 180 HOH HOH . Q 5 HOH A 69 363 181 HOH HOH . Q 5 HOH A 70 364 182 HOH HOH . Q 5 HOH A 71 365 184 HOH HOH . Q 5 HOH A 72 366 187 HOH HOH . Q 5 HOH A 73 367 188 HOH HOH . Q 5 HOH A 74 368 189 HOH HOH . Q 5 HOH A 75 369 192 HOH HOH . Q 5 HOH A 76 370 195 HOH HOH . Q 5 HOH A 77 371 197 HOH HOH . Q 5 HOH A 78 372 198 HOH HOH . Q 5 HOH A 79 373 199 HOH HOH . Q 5 HOH A 80 374 201 HOH HOH . Q 5 HOH A 81 375 202 HOH HOH . Q 5 HOH A 82 376 203 HOH HOH . Q 5 HOH A 83 377 204 HOH HOH . Q 5 HOH A 84 378 205 HOH HOH . Q 5 HOH A 85 379 207 HOH HOH . Q 5 HOH A 86 380 208 HOH HOH . Q 5 HOH A 87 381 210 HOH HOH . Q 5 HOH A 88 382 214 HOH HOH . Q 5 HOH A 89 383 215 HOH HOH . Q 5 HOH A 90 384 217 HOH HOH . Q 5 HOH A 91 385 219 HOH HOH . Q 5 HOH A 92 386 222 HOH HOH . Q 5 HOH A 93 387 223 HOH HOH . Q 5 HOH A 94 388 224 HOH HOH . Q 5 HOH A 95 389 226 HOH HOH . Q 5 HOH A 96 390 231 HOH HOH . Q 5 HOH A 97 391 233 HOH HOH . Q 5 HOH A 98 392 234 HOH HOH . R 5 HOH B 1 293 1 HOH HOH . R 5 HOH B 2 294 2 HOH HOH . R 5 HOH B 3 295 11 HOH HOH . R 5 HOH B 4 296 12 HOH HOH . R 5 HOH B 5 297 13 HOH HOH . R 5 HOH B 6 298 15 HOH HOH . R 5 HOH B 7 299 16 HOH HOH . R 5 HOH B 8 300 19 HOH HOH . R 5 HOH B 9 301 20 HOH HOH . R 5 HOH B 10 302 22 HOH HOH . R 5 HOH B 11 303 26 HOH HOH . R 5 HOH B 12 304 31 HOH HOH . R 5 HOH B 13 305 35 HOH HOH . R 5 HOH B 14 306 37 HOH HOH . R 5 HOH B 15 307 38 HOH HOH . R 5 HOH B 16 308 39 HOH HOH . R 5 HOH B 17 309 43 HOH HOH . R 5 HOH B 18 310 46 HOH HOH . R 5 HOH B 19 311 47 HOH HOH . R 5 HOH B 20 312 48 HOH HOH . R 5 HOH B 21 313 50 HOH HOH . R 5 HOH B 22 314 51 HOH HOH . R 5 HOH B 23 315 53 HOH HOH . R 5 HOH B 24 316 55 HOH HOH . R 5 HOH B 25 317 56 HOH HOH . R 5 HOH B 26 318 57 HOH HOH . R 5 HOH B 27 319 59 HOH HOH . R 5 HOH B 28 320 60 HOH HOH . R 5 HOH B 29 321 65 HOH HOH . R 5 HOH B 30 322 66 HOH HOH . R 5 HOH B 31 323 68 HOH HOH . R 5 HOH B 32 324 73 HOH HOH . R 5 HOH B 33 325 75 HOH HOH . R 5 HOH B 34 326 78 HOH HOH . R 5 HOH B 35 327 81 HOH HOH . R 5 HOH B 36 328 89 HOH HOH . R 5 HOH B 37 329 95 HOH HOH . R 5 HOH B 38 330 99 HOH HOH . R 5 HOH B 39 331 100 HOH HOH . R 5 HOH B 40 332 101 HOH HOH . R 5 HOH B 41 333 105 HOH HOH . R 5 HOH B 42 334 108 HOH HOH . R 5 HOH B 43 335 110 HOH HOH . R 5 HOH B 44 336 112 HOH HOH . R 5 HOH B 45 337 117 HOH HOH . R 5 HOH B 46 338 119 HOH HOH . R 5 HOH B 47 339 128 HOH HOH . R 5 HOH B 48 340 129 HOH HOH . R 5 HOH B 49 341 131 HOH HOH . R 5 HOH B 50 342 137 HOH HOH . R 5 HOH B 51 343 143 HOH HOH . R 5 HOH B 52 344 146 HOH HOH . R 5 HOH B 53 345 147 HOH HOH . R 5 HOH B 54 346 150 HOH HOH . R 5 HOH B 55 347 151 HOH HOH . R 5 HOH B 56 348 153 HOH HOH . R 5 HOH B 57 349 154 HOH HOH . R 5 HOH B 58 350 155 HOH HOH . R 5 HOH B 59 351 156 HOH HOH . R 5 HOH B 60 352 158 HOH HOH . R 5 HOH B 61 353 159 HOH HOH . R 5 HOH B 62 354 165 HOH HOH . R 5 HOH B 63 355 169 HOH HOH . R 5 HOH B 64 356 170 HOH HOH . R 5 HOH B 65 357 171 HOH HOH . R 5 HOH B 66 358 172 HOH HOH . R 5 HOH B 67 359 175 HOH HOH . R 5 HOH B 68 360 176 HOH HOH . R 5 HOH B 69 361 177 HOH HOH . R 5 HOH B 70 362 183 HOH HOH . R 5 HOH B 71 363 185 HOH HOH . R 5 HOH B 72 364 186 HOH HOH . R 5 HOH B 73 365 190 HOH HOH . R 5 HOH B 74 366 206 HOH HOH . R 5 HOH B 75 367 209 HOH HOH . R 5 HOH B 76 368 211 HOH HOH . R 5 HOH B 77 369 212 HOH HOH . R 5 HOH B 78 370 213 HOH HOH . R 5 HOH B 79 371 218 HOH HOH . R 5 HOH B 80 372 227 HOH HOH . R 5 HOH B 81 373 228 HOH HOH . R 5 HOH B 82 374 235 HOH HOH . R 5 HOH B 83 375 236 HOH HOH . S 5 HOH C 1 294 18 HOH HOH . S 5 HOH C 2 295 61 HOH HOH . S 5 HOH C 3 296 63 HOH HOH . S 5 HOH C 4 297 64 HOH HOH . S 5 HOH C 5 298 71 HOH HOH . S 5 HOH C 6 299 72 HOH HOH . S 5 HOH C 7 300 82 HOH HOH . S 5 HOH C 8 301 85 HOH HOH . S 5 HOH C 9 302 86 HOH HOH . S 5 HOH C 10 303 88 HOH HOH . S 5 HOH C 11 304 92 HOH HOH . S 5 HOH C 12 305 96 HOH HOH . S 5 HOH C 13 306 97 HOH HOH . S 5 HOH C 14 307 103 HOH HOH . S 5 HOH C 15 308 111 HOH HOH . S 5 HOH C 16 309 113 HOH HOH . S 5 HOH C 17 310 120 HOH HOH . S 5 HOH C 18 311 121 HOH HOH . S 5 HOH C 19 312 138 HOH HOH . S 5 HOH C 20 313 140 HOH HOH . S 5 HOH C 21 314 157 HOH HOH . S 5 HOH C 22 315 163 HOH HOH . S 5 HOH C 23 316 168 HOH HOH . S 5 HOH C 24 317 191 HOH HOH . S 5 HOH C 25 318 193 HOH HOH . S 5 HOH C 26 319 196 HOH HOH . S 5 HOH C 27 320 221 HOH HOH . S 5 HOH C 28 321 229 HOH HOH . T 5 HOH D 1 293 27 HOH HOH . T 5 HOH D 2 294 80 HOH HOH . T 5 HOH D 3 295 93 HOH HOH . T 5 HOH D 4 296 98 HOH HOH . T 5 HOH D 5 297 106 HOH HOH . T 5 HOH D 6 298 134 HOH HOH . T 5 HOH D 7 299 149 HOH HOH . T 5 HOH D 8 300 164 HOH HOH . T 5 HOH D 9 301 166 HOH HOH . T 5 HOH D 10 302 200 HOH HOH . T 5 HOH D 11 303 216 HOH HOH . T 5 HOH D 12 304 220 HOH HOH . T 5 HOH D 13 305 225 HOH HOH . T 5 HOH D 14 306 230 HOH HOH . T 5 HOH D 15 307 232 HOH HOH . T 5 HOH D 16 308 237 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -31.638 _atom_site.Cartn_y 50.109 _atom_site.Cartn_z 15.78 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 77.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #