data_3PKT # _model_server_result.job_id Av6djoWHlf4jo3qYSOluDQ _model_server_result.datetime_utc '2024-11-24 01:32:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pkt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 3PKT # _exptl.entry_id 3PKT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 44.013 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITROUS OXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PKT _cell.length_a 80.238 _cell.length_b 96.26 _cell.length_c 105.543 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PKT _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 80.238 96.26 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 80.238 0 105.543 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 96.26 105.543 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? metalc ? metalc1 A O ILE 89 A ILE 88 1_555 C NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc2 A O TYR 92 A TYR 91 1_555 C NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc3 A O ILE 95 A ILE 94 1_555 C NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc4 A OE1 GLU 137 A GLU 136 1_555 C NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc5 C NA NA . A NA 303 1_555 E O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? # _chem_comp.formula 'N2 O' _chem_comp.formula_weight 44.013 _chem_comp.id N2O _chem_comp.mon_nstd_flag . _chem_comp.name 'NITROUS OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'NITROGEN OXIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 N2 N2O sing 258 n n N2 N1 N2O trip 259 n n # _atom_sites.entry_id 3PKT _atom_sites.fract_transf_matrix[1][1] 0.012463 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AZA A 1 302 302 AZA AZA . C 3 NA A 1 303 303 NA NA . D 4 N2O A 1 801 801 N2O N2O . E 5 HOH A 1 401 401 HOH HOH . E 5 HOH A 2 402 402 HOH HOH . E 5 HOH A 3 403 403 HOH HOH . E 5 HOH A 4 404 404 HOH HOH . E 5 HOH A 5 405 405 HOH HOH . E 5 HOH A 6 406 406 HOH HOH . E 5 HOH A 7 407 407 HOH HOH . E 5 HOH A 8 408 408 HOH HOH . E 5 HOH A 9 409 409 HOH HOH . E 5 HOH A 10 410 410 HOH HOH . E 5 HOH A 11 411 411 HOH HOH . E 5 HOH A 12 412 412 HOH HOH . E 5 HOH A 13 413 413 HOH HOH . E 5 HOH A 14 414 414 HOH HOH . E 5 HOH A 15 415 415 HOH HOH . E 5 HOH A 16 416 416 HOH HOH . E 5 HOH A 17 417 417 HOH HOH . E 5 HOH A 18 418 418 HOH HOH . E 5 HOH A 19 419 419 HOH HOH . E 5 HOH A 20 420 420 HOH HOH . E 5 HOH A 21 421 421 HOH HOH . E 5 HOH A 22 422 422 HOH HOH . E 5 HOH A 23 423 423 HOH HOH . E 5 HOH A 24 424 424 HOH HOH . E 5 HOH A 25 425 425 HOH HOH . E 5 HOH A 26 426 426 HOH HOH . E 5 HOH A 27 427 427 HOH HOH . E 5 HOH A 28 428 428 HOH HOH . E 5 HOH A 29 429 429 HOH HOH . E 5 HOH A 30 430 430 HOH HOH . E 5 HOH A 31 431 431 HOH HOH . E 5 HOH A 32 432 432 HOH HOH . E 5 HOH A 33 433 433 HOH HOH . E 5 HOH A 34 434 434 HOH HOH . E 5 HOH A 35 435 435 HOH HOH . E 5 HOH A 36 436 436 HOH HOH . E 5 HOH A 37 437 437 HOH HOH . E 5 HOH A 38 438 438 HOH HOH . E 5 HOH A 39 439 439 HOH HOH . E 5 HOH A 40 440 440 HOH HOH . E 5 HOH A 41 441 441 HOH HOH . E 5 HOH A 42 442 442 HOH HOH . E 5 HOH A 43 443 443 HOH HOH . E 5 HOH A 44 444 444 HOH HOH . E 5 HOH A 45 445 445 HOH HOH . E 5 HOH A 46 446 446 HOH HOH . E 5 HOH A 47 447 447 HOH HOH . E 5 HOH A 48 448 448 HOH HOH . E 5 HOH A 49 449 449 HOH HOH . E 5 HOH A 50 450 450 HOH HOH . E 5 HOH A 51 451 451 HOH HOH . E 5 HOH A 52 452 452 HOH HOH . E 5 HOH A 53 453 453 HOH HOH . E 5 HOH A 54 454 454 HOH HOH . E 5 HOH A 55 455 455 HOH HOH . E 5 HOH A 56 456 456 HOH HOH . E 5 HOH A 57 457 457 HOH HOH . E 5 HOH A 58 458 458 HOH HOH . E 5 HOH A 59 459 459 HOH HOH . E 5 HOH A 60 460 460 HOH HOH . E 5 HOH A 61 461 461 HOH HOH . E 5 HOH A 62 462 462 HOH HOH . E 5 HOH A 63 463 463 HOH HOH . E 5 HOH A 64 464 464 HOH HOH . E 5 HOH A 65 466 466 HOH HOH . E 5 HOH A 66 467 467 HOH HOH . E 5 HOH A 67 468 468 HOH HOH . E 5 HOH A 68 469 469 HOH HOH . E 5 HOH A 69 470 470 HOH HOH . E 5 HOH A 70 471 471 HOH HOH . E 5 HOH A 71 473 473 HOH HOH . E 5 HOH A 72 474 474 HOH HOH . E 5 HOH A 73 475 475 HOH HOH . E 5 HOH A 74 476 476 HOH HOH . E 5 HOH A 75 477 477 HOH HOH . E 5 HOH A 76 478 478 HOH HOH . E 5 HOH A 77 480 480 HOH HOH . E 5 HOH A 78 481 481 HOH HOH . E 5 HOH A 79 482 482 HOH HOH . E 5 HOH A 80 483 483 HOH HOH . E 5 HOH A 81 484 484 HOH HOH . E 5 HOH A 82 485 485 HOH HOH . E 5 HOH A 83 486 486 HOH HOH . E 5 HOH A 84 487 487 HOH HOH . E 5 HOH A 85 488 488 HOH HOH . E 5 HOH A 86 489 489 HOH HOH . E 5 HOH A 87 490 490 HOH HOH . E 5 HOH A 88 491 491 HOH HOH . E 5 HOH A 89 492 492 HOH HOH . E 5 HOH A 90 493 493 HOH HOH . E 5 HOH A 91 494 494 HOH HOH . E 5 HOH A 92 495 495 HOH HOH . E 5 HOH A 93 496 496 HOH HOH . E 5 HOH A 94 497 497 HOH HOH . E 5 HOH A 95 498 498 HOH HOH . E 5 HOH A 96 499 499 HOH HOH . E 5 HOH A 97 500 500 HOH HOH . E 5 HOH A 98 501 501 HOH HOH . E 5 HOH A 99 502 502 HOH HOH . E 5 HOH A 100 503 503 HOH HOH . E 5 HOH A 101 504 504 HOH HOH . E 5 HOH A 102 505 505 HOH HOH . E 5 HOH A 103 506 506 HOH HOH . E 5 HOH A 104 509 509 HOH HOH . E 5 HOH A 105 511 511 HOH HOH . E 5 HOH A 106 512 512 HOH HOH . E 5 HOH A 107 513 513 HOH HOH . E 5 HOH A 108 514 514 HOH HOH . E 5 HOH A 109 515 515 HOH HOH . E 5 HOH A 110 516 516 HOH HOH . E 5 HOH A 111 518 518 HOH HOH . E 5 HOH A 112 519 519 HOH HOH . E 5 HOH A 113 520 520 HOH HOH . E 5 HOH A 114 521 521 HOH HOH . E 5 HOH A 115 523 523 HOH HOH . E 5 HOH A 116 524 524 HOH HOH . E 5 HOH A 117 525 525 HOH HOH . E 5 HOH A 118 526 526 HOH HOH . E 5 HOH A 119 527 527 HOH HOH . E 5 HOH A 120 528 528 HOH HOH . E 5 HOH A 121 529 529 HOH HOH . E 5 HOH A 122 532 532 HOH HOH . E 5 HOH A 123 533 533 HOH HOH . E 5 HOH A 124 535 535 HOH HOH . E 5 HOH A 125 536 536 HOH HOH . E 5 HOH A 126 538 538 HOH HOH . E 5 HOH A 127 539 539 HOH HOH . E 5 HOH A 128 540 540 HOH HOH . E 5 HOH A 129 541 541 HOH HOH . E 5 HOH A 130 542 542 HOH HOH . E 5 HOH A 131 543 543 HOH HOH . E 5 HOH A 132 544 544 HOH HOH . E 5 HOH A 133 545 545 HOH HOH . E 5 HOH A 134 546 546 HOH HOH . E 5 HOH A 135 547 547 HOH HOH . E 5 HOH A 136 551 551 HOH HOH . E 5 HOH A 137 552 552 HOH HOH . E 5 HOH A 138 554 554 HOH HOH . E 5 HOH A 139 555 555 HOH HOH . E 5 HOH A 140 558 558 HOH HOH . E 5 HOH A 141 559 559 HOH HOH . E 5 HOH A 142 562 562 HOH HOH . E 5 HOH A 143 564 564 HOH HOH . E 5 HOH A 144 567 567 HOH HOH . E 5 HOH A 145 568 568 HOH HOH . E 5 HOH A 146 570 570 HOH HOH . E 5 HOH A 147 574 574 HOH HOH . E 5 HOH A 148 579 579 HOH HOH . E 5 HOH A 149 580 580 HOH HOH . E 5 HOH A 150 581 581 HOH HOH . E 5 HOH A 151 584 584 HOH HOH . E 5 HOH A 152 587 587 HOH HOH . E 5 HOH A 153 588 588 HOH HOH . E 5 HOH A 154 590 590 HOH HOH . E 5 HOH A 155 591 591 HOH HOH . E 5 HOH A 156 594 594 HOH HOH . E 5 HOH A 157 596 596 HOH HOH . E 5 HOH A 158 598 598 HOH HOH . E 5 HOH A 159 604 604 HOH HOH . E 5 HOH A 160 605 605 HOH HOH . E 5 HOH A 161 610 610 HOH HOH . E 5 HOH A 162 634 634 HOH HOH . E 5 HOH A 163 637 637 HOH HOH . E 5 HOH A 164 660 660 HOH HOH . E 5 HOH A 165 667 667 HOH HOH . E 5 HOH A 166 699 699 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 N2O . . . D 4 23.66 34.291 37.898 0.6 34.93 ? O3 N2O 801 A 1 HETATM 2 N N2 N2O . . . D 4 24.065 34.097 39.037 0.6 34.6 ? N2 N2O 801 A 1 HETATM 3 N N1 N2O . . . D 4 24.49 33.845 40.154 0.6 35.94 ? N1 N2O 801 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 3 #