data_3PKU
#
_model_server_result.job_id            y9XTtdFd4WN9u7vTNih6tQ 
_model_server_result.datetime_utc      '2024-11-15 08:54:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pku 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":303}' 
#
_entry.id    3PKU 
#
_exptl.entry_id    3PKU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3PKU 
_cell.length_a            80.12 
_cell.length_b            96.211 
_cell.length_c            105.456 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PKU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 80.12 96.211 0 
3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 80.12 0 105.456 
4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 96.211 105.456 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
metalc ? metalc1 A O ILE 89 A ILE 88 1_555 C NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc2 A O TYR 92 A TYR 91 1_555 C NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? 
metalc ? metalc3 A O ILE 95 A ILE 94 1_555 C NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc4 A OE1 GLU 137 A GLU 136 1_555 C NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? 
metalc ? metalc5 C NA NA . A NA 303 1_555 F O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3PKU 
_atom_sites.fract_transf_matrix[1][1]    0.012481 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010394 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009483 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AZA A 1 302 302 AZA AZA . 
C 3 NA A 1 303 303 NA NA . 
D 4 CL A 1 402 402 CL CL . 
E 5 N2O A 1 801 801 N2O N2O . 
F 6 HOH A 1 401 401 HOH HOH . 
F 6 HOH A 2 403 403 HOH HOH . 
F 6 HOH A 3 404 404 HOH HOH . 
F 6 HOH A 4 405 405 HOH HOH . 
F 6 HOH A 5 406 406 HOH HOH . 
F 6 HOH A 6 407 407 HOH HOH . 
F 6 HOH A 7 408 408 HOH HOH . 
F 6 HOH A 8 409 409 HOH HOH . 
F 6 HOH A 9 410 410 HOH HOH . 
F 6 HOH A 10 411 411 HOH HOH . 
F 6 HOH A 11 412 412 HOH HOH . 
F 6 HOH A 12 413 413 HOH HOH . 
F 6 HOH A 13 414 414 HOH HOH . 
F 6 HOH A 14 415 415 HOH HOH . 
F 6 HOH A 15 416 416 HOH HOH . 
F 6 HOH A 16 417 417 HOH HOH . 
F 6 HOH A 17 418 418 HOH HOH . 
F 6 HOH A 18 419 419 HOH HOH . 
F 6 HOH A 19 420 420 HOH HOH . 
F 6 HOH A 20 421 421 HOH HOH . 
F 6 HOH A 21 422 422 HOH HOH . 
F 6 HOH A 22 423 423 HOH HOH . 
F 6 HOH A 23 424 424 HOH HOH . 
F 6 HOH A 24 425 425 HOH HOH . 
F 6 HOH A 25 426 426 HOH HOH . 
F 6 HOH A 26 427 427 HOH HOH . 
F 6 HOH A 27 428 428 HOH HOH . 
F 6 HOH A 28 429 429 HOH HOH . 
F 6 HOH A 29 430 430 HOH HOH . 
F 6 HOH A 30 431 431 HOH HOH . 
F 6 HOH A 31 432 432 HOH HOH . 
F 6 HOH A 32 433 433 HOH HOH . 
F 6 HOH A 33 434 434 HOH HOH . 
F 6 HOH A 34 435 435 HOH HOH . 
F 6 HOH A 35 436 436 HOH HOH . 
F 6 HOH A 36 437 437 HOH HOH . 
F 6 HOH A 37 438 438 HOH HOH . 
F 6 HOH A 38 439 439 HOH HOH . 
F 6 HOH A 39 440 440 HOH HOH . 
F 6 HOH A 40 441 441 HOH HOH . 
F 6 HOH A 41 442 442 HOH HOH . 
F 6 HOH A 42 443 443 HOH HOH . 
F 6 HOH A 43 444 444 HOH HOH . 
F 6 HOH A 44 445 445 HOH HOH . 
F 6 HOH A 45 446 446 HOH HOH . 
F 6 HOH A 46 447 447 HOH HOH . 
F 6 HOH A 47 448 448 HOH HOH . 
F 6 HOH A 48 449 449 HOH HOH . 
F 6 HOH A 49 450 450 HOH HOH . 
F 6 HOH A 50 451 451 HOH HOH . 
F 6 HOH A 51 452 452 HOH HOH . 
F 6 HOH A 52 453 453 HOH HOH . 
F 6 HOH A 53 454 454 HOH HOH . 
F 6 HOH A 54 455 455 HOH HOH . 
F 6 HOH A 55 456 456 HOH HOH . 
F 6 HOH A 56 457 457 HOH HOH . 
F 6 HOH A 57 458 458 HOH HOH . 
F 6 HOH A 58 459 459 HOH HOH . 
F 6 HOH A 59 460 460 HOH HOH . 
F 6 HOH A 60 461 461 HOH HOH . 
F 6 HOH A 61 462 462 HOH HOH . 
F 6 HOH A 62 463 463 HOH HOH . 
F 6 HOH A 63 464 464 HOH HOH . 
F 6 HOH A 64 465 465 HOH HOH . 
F 6 HOH A 65 466 466 HOH HOH . 
F 6 HOH A 66 467 467 HOH HOH . 
F 6 HOH A 67 468 468 HOH HOH . 
F 6 HOH A 68 469 469 HOH HOH . 
F 6 HOH A 69 470 470 HOH HOH . 
F 6 HOH A 70 471 471 HOH HOH . 
F 6 HOH A 71 472 472 HOH HOH . 
F 6 HOH A 72 473 473 HOH HOH . 
F 6 HOH A 73 474 474 HOH HOH . 
F 6 HOH A 74 475 475 HOH HOH . 
F 6 HOH A 75 476 476 HOH HOH . 
F 6 HOH A 76 477 477 HOH HOH . 
F 6 HOH A 77 478 478 HOH HOH . 
F 6 HOH A 78 480 480 HOH HOH . 
F 6 HOH A 79 481 481 HOH HOH . 
F 6 HOH A 80 482 482 HOH HOH . 
F 6 HOH A 81 483 483 HOH HOH . 
F 6 HOH A 82 484 484 HOH HOH . 
F 6 HOH A 83 485 485 HOH HOH . 
F 6 HOH A 84 486 486 HOH HOH . 
F 6 HOH A 85 487 487 HOH HOH . 
F 6 HOH A 86 488 488 HOH HOH . 
F 6 HOH A 87 489 489 HOH HOH . 
F 6 HOH A 88 490 490 HOH HOH . 
F 6 HOH A 89 491 491 HOH HOH . 
F 6 HOH A 90 492 492 HOH HOH . 
F 6 HOH A 91 493 493 HOH HOH . 
F 6 HOH A 92 494 494 HOH HOH . 
F 6 HOH A 93 495 495 HOH HOH . 
F 6 HOH A 94 496 496 HOH HOH . 
F 6 HOH A 95 497 497 HOH HOH . 
F 6 HOH A 96 498 498 HOH HOH . 
F 6 HOH A 97 499 499 HOH HOH . 
F 6 HOH A 98 500 500 HOH HOH . 
F 6 HOH A 99 501 501 HOH HOH . 
F 6 HOH A 100 502 502 HOH HOH . 
F 6 HOH A 101 503 503 HOH HOH . 
F 6 HOH A 102 504 504 HOH HOH . 
F 6 HOH A 103 506 506 HOH HOH . 
F 6 HOH A 104 507 507 HOH HOH . 
F 6 HOH A 105 508 508 HOH HOH . 
F 6 HOH A 106 509 509 HOH HOH . 
F 6 HOH A 107 511 511 HOH HOH . 
F 6 HOH A 108 512 512 HOH HOH . 
F 6 HOH A 109 513 513 HOH HOH . 
F 6 HOH A 110 514 514 HOH HOH . 
F 6 HOH A 111 515 515 HOH HOH . 
F 6 HOH A 112 516 516 HOH HOH . 
F 6 HOH A 113 517 517 HOH HOH . 
F 6 HOH A 114 518 518 HOH HOH . 
F 6 HOH A 115 519 519 HOH HOH . 
F 6 HOH A 116 520 520 HOH HOH . 
F 6 HOH A 117 521 521 HOH HOH . 
F 6 HOH A 118 522 522 HOH HOH . 
F 6 HOH A 119 523 523 HOH HOH . 
F 6 HOH A 120 524 524 HOH HOH . 
F 6 HOH A 121 525 525 HOH HOH . 
F 6 HOH A 122 526 526 HOH HOH . 
F 6 HOH A 123 527 527 HOH HOH . 
F 6 HOH A 124 528 528 HOH HOH . 
F 6 HOH A 125 529 529 HOH HOH . 
F 6 HOH A 126 530 530 HOH HOH . 
F 6 HOH A 127 532 532 HOH HOH . 
F 6 HOH A 128 533 533 HOH HOH . 
F 6 HOH A 129 535 535 HOH HOH . 
F 6 HOH A 130 536 536 HOH HOH . 
F 6 HOH A 131 538 538 HOH HOH . 
F 6 HOH A 132 539 539 HOH HOH . 
F 6 HOH A 133 540 540 HOH HOH . 
F 6 HOH A 134 541 541 HOH HOH . 
F 6 HOH A 135 542 542 HOH HOH . 
F 6 HOH A 136 543 543 HOH HOH . 
F 6 HOH A 137 544 544 HOH HOH . 
F 6 HOH A 138 545 545 HOH HOH . 
F 6 HOH A 139 546 546 HOH HOH . 
F 6 HOH A 140 547 547 HOH HOH . 
F 6 HOH A 141 549 549 HOH HOH . 
F 6 HOH A 142 550 550 HOH HOH . 
F 6 HOH A 143 551 551 HOH HOH . 
F 6 HOH A 144 554 554 HOH HOH . 
F 6 HOH A 145 555 555 HOH HOH . 
F 6 HOH A 146 558 558 HOH HOH . 
F 6 HOH A 147 559 559 HOH HOH . 
F 6 HOH A 148 560 560 HOH HOH . 
F 6 HOH A 149 562 562 HOH HOH . 
F 6 HOH A 150 564 564 HOH HOH . 
F 6 HOH A 151 567 567 HOH HOH . 
F 6 HOH A 152 568 568 HOH HOH . 
F 6 HOH A 153 570 570 HOH HOH . 
F 6 HOH A 154 571 571 HOH HOH . 
F 6 HOH A 155 574 574 HOH HOH . 
F 6 HOH A 156 576 576 HOH HOH . 
F 6 HOH A 157 577 577 HOH HOH . 
F 6 HOH A 158 579 579 HOH HOH . 
F 6 HOH A 159 580 580 HOH HOH . 
F 6 HOH A 160 581 581 HOH HOH . 
F 6 HOH A 161 584 584 HOH HOH . 
F 6 HOH A 162 585 585 HOH HOH . 
F 6 HOH A 163 587 587 HOH HOH . 
F 6 HOH A 164 588 588 HOH HOH . 
F 6 HOH A 165 589 589 HOH HOH . 
F 6 HOH A 166 590 590 HOH HOH . 
F 6 HOH A 167 591 591 HOH HOH . 
F 6 HOH A 168 594 594 HOH HOH . 
F 6 HOH A 169 595 595 HOH HOH . 
F 6 HOH A 170 598 598 HOH HOH . 
F 6 HOH A 171 601 601 HOH HOH . 
F 6 HOH A 172 604 604 HOH HOH . 
F 6 HOH A 173 605 605 HOH HOH . 
F 6 HOH A 174 612 612 HOH HOH . 
F 6 HOH A 175 625 625 HOH HOH . 
F 6 HOH A 176 626 626 HOH HOH . 
F 6 HOH A 177 627 627 HOH HOH . 
F 6 HOH A 178 637 637 HOH HOH . 
F 6 HOH A 179 660 660 HOH HOH . 
F 6 HOH A 180 662 662 HOH HOH . 
F 6 HOH A 181 668 668 HOH HOH . 
F 6 HOH A 182 670 670 HOH HOH . 
F 6 HOH A 183 676 676 HOH HOH . 
F 6 HOH A 184 677 677 HOH HOH . 
F 6 HOH A 185 680 680 HOH HOH . 
F 6 HOH A 186 684 684 HOH HOH . 
F 6 HOH A 187 687 687 HOH HOH . 
F 6 HOH A 188 689 689 HOH HOH . 
F 6 HOH A 189 693 693 HOH HOH . 
F 6 HOH A 190 699 699 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               37.284 
_atom_site.Cartn_y               71.22 
_atom_site.Cartn_z               22.013 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        27.41 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           303 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#