data_3PL6 # _model_server_result.job_id Ko1lPp1GOJS0m9l9VOgQEQ _model_server_result.datetime_utc '2024-12-26 18:05:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pl6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":5467}' # _entry.id 3PL6 # _exptl.entry_id 3PL6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residues 84-98' _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PL6 _cell.length_a 73.123 _cell.length_b 124.815 _cell.length_c 134.921 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PL6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 107 1_555 A SG CYS 166 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 17 B CYS 15 1_555 B SG CYS 81 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 B SG CYS 119 B CYS 117 1_555 B SG CYS 175 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf4 C SG CYS 22 C CYS 23 1_555 C SG CYS 89 C CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 C SG CYS 134 C CYS 135 1_555 C SG CYS 184 C CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 C SG CYS 159 C CYS 160 1_555 D SG CYS 194 D CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf7 D SG CYS 48 D CYS 48 1_555 D SG CYS 117 D CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 D SG CYS 168 D CYS 168 1_555 D SG CYS 233 D CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale1 A ND2 ASN 121 A ASN 118 1_555 E C1 NAG . A NAG 1181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale2 B ND2 ASN 21 B ASN 19 1_555 F C1 NAG . B NAG 5467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3PL6 _atom_sites.fract_transf_matrix[1][1] 0.013676 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008012 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007412 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 1181 1181 NAG NAG . F 5 NAG B 1 5467 5467 NAG NAG . G 6 HOH A 1 192 192 HOH HOH . G 6 HOH A 2 193 193 HOH HOH . G 6 HOH A 3 194 194 HOH HOH . G 6 HOH A 4 195 195 HOH HOH . G 6 HOH A 5 196 196 HOH HOH . G 6 HOH A 6 197 197 HOH HOH . G 6 HOH A 7 198 198 HOH HOH . G 6 HOH A 8 199 199 HOH HOH . G 6 HOH A 9 200 200 HOH HOH . G 6 HOH A 10 201 201 HOH HOH . G 6 HOH A 11 202 202 HOH HOH . G 6 HOH A 12 203 203 HOH HOH . G 6 HOH A 13 204 204 HOH HOH . G 6 HOH A 14 205 205 HOH HOH . G 6 HOH A 15 206 206 HOH HOH . G 6 HOH A 16 207 207 HOH HOH . G 6 HOH A 17 208 208 HOH HOH . G 6 HOH A 18 209 209 HOH HOH . G 6 HOH A 19 210 210 HOH HOH . G 6 HOH A 20 211 211 HOH HOH . G 6 HOH A 21 230 230 HOH HOH . H 6 HOH B 1 201 201 HOH HOH . H 6 HOH B 2 202 202 HOH HOH . H 6 HOH B 3 203 203 HOH HOH . H 6 HOH B 4 204 204 HOH HOH . H 6 HOH B 5 205 205 HOH HOH . H 6 HOH B 6 206 206 HOH HOH . H 6 HOH B 7 207 207 HOH HOH . H 6 HOH B 8 208 208 HOH HOH . H 6 HOH B 9 209 209 HOH HOH . H 6 HOH B 10 210 210 HOH HOH . H 6 HOH B 11 211 211 HOH HOH . H 6 HOH B 12 212 212 HOH HOH . H 6 HOH B 13 213 213 HOH HOH . I 6 HOH C 1 1 1 HOH HOH . I 6 HOH C 2 208 208 HOH HOH . I 6 HOH C 3 209 209 HOH HOH . I 6 HOH C 4 210 210 HOH HOH . I 6 HOH C 5 211 211 HOH HOH . I 6 HOH C 6 212 212 HOH HOH . I 6 HOH C 7 213 213 HOH HOH . I 6 HOH C 8 214 214 HOH HOH . I 6 HOH C 9 215 215 HOH HOH . I 6 HOH C 10 216 216 HOH HOH . I 6 HOH C 11 217 217 HOH HOH . I 6 HOH C 12 218 218 HOH HOH . I 6 HOH C 13 219 219 HOH HOH . I 6 HOH C 14 220 220 HOH HOH . I 6 HOH C 15 221 221 HOH HOH . I 6 HOH C 16 222 222 HOH HOH . I 6 HOH C 17 223 223 HOH HOH . I 6 HOH C 18 224 224 HOH HOH . I 6 HOH C 19 225 225 HOH HOH . I 6 HOH C 20 226 226 HOH HOH . I 6 HOH C 21 227 227 HOH HOH . I 6 HOH C 22 228 228 HOH HOH . I 6 HOH C 23 229 229 HOH HOH . I 6 HOH C 24 231 231 HOH HOH . I 6 HOH C 25 232 232 HOH HOH . I 6 HOH C 26 233 233 HOH HOH . I 6 HOH C 27 234 234 HOH HOH . I 6 HOH C 28 235 235 HOH HOH . I 6 HOH C 29 236 236 HOH HOH . I 6 HOH C 30 237 237 HOH HOH . J 6 HOH D 1 269 269 HOH HOH . J 6 HOH D 2 270 270 HOH HOH . J 6 HOH D 3 271 271 HOH HOH . J 6 HOH D 4 272 272 HOH HOH . J 6 HOH D 5 273 273 HOH HOH . J 6 HOH D 6 274 274 HOH HOH . J 6 HOH D 7 275 275 HOH HOH . J 6 HOH D 8 276 276 HOH HOH . J 6 HOH D 9 277 277 HOH HOH . J 6 HOH D 10 278 278 HOH HOH . J 6 HOH D 11 279 279 HOH HOH . J 6 HOH D 12 280 280 HOH HOH . J 6 HOH D 13 281 281 HOH HOH . J 6 HOH D 14 282 282 HOH HOH . J 6 HOH D 15 283 283 HOH HOH . J 6 HOH D 16 284 284 HOH HOH . J 6 HOH D 17 285 285 HOH HOH . J 6 HOH D 18 286 286 HOH HOH . J 6 HOH D 19 287 287 HOH HOH . J 6 HOH D 20 288 288 HOH HOH . J 6 HOH D 21 289 289 HOH HOH . J 6 HOH D 22 290 290 HOH HOH . J 6 HOH D 23 291 291 HOH HOH . J 6 HOH D 24 292 292 HOH HOH . J 6 HOH D 25 293 293 HOH HOH . J 6 HOH D 26 294 294 HOH HOH . J 6 HOH D 27 295 295 HOH HOH . J 6 HOH D 28 296 296 HOH HOH . J 6 HOH D 29 297 297 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 5 63.19 53.64 -50.744 1 90.33 ? C1 NAG 5467 B 1 HETATM 2 C C2 NAG . . . F 5 64.25 54.761 -50.761 1 92.07 ? C2 NAG 5467 B 1 HETATM 3 C C3 NAG . . . F 5 65.631 54.127 -50.562 1 93.77 ? C3 NAG 5467 B 1 HETATM 4 C C4 NAG . . . F 5 65.641 53.334 -49.27 1 93.91 ? C4 NAG 5467 B 1 HETATM 5 C C5 NAG . . . F 5 64.518 52.281 -49.273 1 93.75 ? C5 NAG 5467 B 1 HETATM 6 C C6 NAG . . . F 5 64.4 51.538 -47.963 1 94.58 ? C6 NAG 5467 B 1 HETATM 7 C C7 NAG . . . F 5 63.52 56.645 -52.12 1 93.38 ? C7 NAG 5467 B 1 HETATM 8 C C8 NAG . . . F 5 63.645 57.42 -53.428 1 92.81 ? C8 NAG 5467 B 1 HETATM 9 N N2 NAG . . . F 5 64.2 55.497 -52.018 1 92.84 ? N2 NAG 5467 B 1 HETATM 10 O O3 NAG . . . F 5 66.648 55.126 -50.53 1 94.84 ? O3 NAG 5467 B 1 HETATM 11 O O4 NAG . . . F 5 66.896 52.688 -49.107 1 94.54 ? O4 NAG 5467 B 1 HETATM 12 O O5 NAG . . . F 5 63.239 52.909 -49.505 1 92.27 ? O5 NAG 5467 B 1 HETATM 13 O O6 NAG . . . F 5 63.203 50.777 -47.942 1 95.17 ? O6 NAG 5467 B 1 HETATM 14 O O7 NAG . . . F 5 62.795 57.086 -51.225 1 95.04 ? O7 NAG 5467 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #