data_3PL9
#
_model_server_result.job_id            0LECSpuJLAi0Gd-tt7-Lrg 
_model_server_result.datetime_utc      '2024-11-24 23:55:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pl9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":631}' 
#
_entry.id    3PL9 
#
_exptl.entry_id    3PL9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              294.408 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'heptyl 1-thio-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3PL9 
_cell.length_a            68.793 
_cell.length_b            68.793 
_cell.length_c            425.778 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PL9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 S N N 
? 8 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 96 A GLU 96 1_555 B MG CLA . A CLA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc2 A OE1 GLU 159 A GLU 159 1_555 H MG CLA . A CLA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc3 A OE1 GLU 197 A GLU 197 1_555 I MG CLA . A CLA 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc4 A OE1 GLN 214 A GLN 214 1_555 L MG CLA . A CLA 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc5 U O HOH . A HOH 245 1_555 F MG CHL . A CHL 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc6 U O HOH . A HOH 247 1_555 G MG CHL . A CHL 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc7 U O HOH . A HOH 248 1_555 E MG CHL . A CHL 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc8 U O HOH . A HOH 307 1_555 D MG CLA . A CLA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc9 J MG CLA . A CLA 611 1_555 R O3P G3P . A G3P 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? 
metalc ? metalc10 J MG CLA . A CLA 611 1_555 R O2P G3P . A G3P 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? 
metalc ? metalc11 N MG CLA . A CLA 615 1_555 R O4P G3P . A G3P 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
#
_chem_comp.formula           'C13 H26 O5 S' 
_chem_comp.formula_weight    294.408 
_chem_comp.id                HTG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'heptyl 1-thio-beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'HEPTYL 1-THIOHEXOPYRANOSIDE;heptyl 1-thio-beta-D-glucoside;heptyl 1-thio-D-glucoside;heptyl 1-thio-glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 S1 HTG sing 459 n n 
C1 C2 HTG sing 460 n n 
C1 O5 HTG sing 461 n n 
C1 H1 HTG sing 462 n n 
S1 C1' HTG sing 463 n n 
C2 O2 HTG sing 464 n n 
C2 C3 HTG sing 465 n n 
C2 H2 HTG sing 466 n n 
O2 HO2 HTG sing 467 n n 
C3 O3 HTG sing 468 n n 
C3 C4 HTG sing 469 n n 
C3 H3 HTG sing 470 n n 
O3 HO3 HTG sing 471 n n 
C4 O4 HTG sing 472 n n 
C4 C5 HTG sing 473 n n 
C4 H4 HTG sing 474 n n 
O4 HO4 HTG sing 475 n n 
C5 O5 HTG sing 476 n n 
C5 C6 HTG sing 477 n n 
C5 H5 HTG sing 478 n n 
C6 O6 HTG sing 479 n n 
C6 H61 HTG sing 480 n n 
C6 H62 HTG sing 481 n n 
O6 HO6 HTG sing 482 n n 
C1' C2' HTG sing 483 n n 
C1' "H1'1" HTG sing 484 n n 
C1' "H1'2" HTG sing 485 n n 
C2' C3' HTG sing 486 n n 
C2' "H2'1" HTG sing 487 n n 
C2' "H2'2" HTG sing 488 n n 
C3' C4' HTG sing 489 n n 
C3' "H3'1" HTG sing 490 n n 
C3' "H3'2" HTG sing 491 n n 
C4' C5' HTG sing 492 n n 
C4' "H4'1" HTG sing 493 n n 
C4' "H4'2" HTG sing 494 n n 
C5' C6' HTG sing 495 n n 
C5' "H5'1" HTG sing 496 n n 
C5' "H5'2" HTG sing 497 n n 
C6' C7' HTG sing 498 n n 
C6' "H6'1" HTG sing 499 n n 
C6' "H6'2" HTG sing 500 n n 
C7' "H7'1" HTG sing 501 n n 
C7' "H7'2" HTG sing 502 n n 
C7' "H7'3" HTG sing 503 n n 
#
_atom_sites.entry_id                     3PL9 
_atom_sites.fract_transf_matrix[1][1]    0.014536 
_atom_sites.fract_transf_matrix[1][2]    0.008393 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016785 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002349 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CLA A 1 602 602 CLA CLA . 
C 2 CLA A 1 603 603 CLA CLA . 
D 2 CLA A 1 604 604 CLA CLA . 
E 3 CHL A 1 606 606 CHL CHL . 
F 3 CHL A 1 607 607 CHL CHL . 
G 3 CHL A 1 608 608 CHL CHL . 
H 2 CLA A 1 609 609 CLA CLA . 
I 2 CLA A 1 610 610 CLA CLA . 
J 2 CLA A 1 611 611 CLA CLA . 
K 2 CLA A 1 612 612 CLA CLA . 
L 2 CLA A 1 613 613 CLA CLA . 
M 3 CHL A 1 614 614 CHL CHL . 
N 2 CLA A 1 615 615 CLA CLA . 
O 4 LUT A 1 620 620 LUT LUT . 
P 5 XAT A 1 622 622 XAT XAT . 
Q 6 NEX A 1 623 623 NEX NEX . 
R 7 G3P A 1 630 630 G3P G3P . 
S 8 HTG A 1 631 631 HTG HTG . 
T 8 HTG A 1 632 632 HTG HTG . 
U 9 HOH A 1 244 244 HOH HOH . 
U 9 HOH A 2 245 245 HOH HOH . 
U 9 HOH A 3 246 246 HOH HOH . 
U 9 HOH A 4 247 247 HOH HOH . 
U 9 HOH A 5 248 248 HOH HOH . 
U 9 HOH A 6 249 249 HOH HOH . 
U 9 HOH A 7 250 250 HOH HOH . 
U 9 HOH A 8 251 251 HOH HOH . 
U 9 HOH A 9 252 252 HOH HOH . 
U 9 HOH A 10 253 253 HOH HOH . 
U 9 HOH A 11 254 254 HOH HOH . 
U 9 HOH A 12 255 255 HOH HOH . 
U 9 HOH A 13 256 256 HOH HOH . 
U 9 HOH A 14 257 257 HOH HOH . 
U 9 HOH A 15 258 258 HOH HOH . 
U 9 HOH A 16 259 259 HOH HOH . 
U 9 HOH A 17 260 260 HOH HOH . 
U 9 HOH A 18 261 261 HOH HOH . 
U 9 HOH A 19 262 262 HOH HOH . 
U 9 HOH A 20 263 263 HOH HOH . 
U 9 HOH A 21 264 264 HOH HOH . 
U 9 HOH A 22 265 265 HOH HOH . 
U 9 HOH A 23 266 266 HOH HOH . 
U 9 HOH A 24 267 267 HOH HOH . 
U 9 HOH A 25 268 268 HOH HOH . 
U 9 HOH A 26 269 269 HOH HOH . 
U 9 HOH A 27 270 270 HOH HOH . 
U 9 HOH A 28 271 271 HOH HOH . 
U 9 HOH A 29 272 272 HOH HOH . 
U 9 HOH A 30 273 273 HOH HOH . 
U 9 HOH A 31 274 274 HOH HOH . 
U 9 HOH A 32 275 275 HOH HOH . 
U 9 HOH A 33 276 276 HOH HOH . 
U 9 HOH A 34 277 277 HOH HOH . 
U 9 HOH A 35 278 278 HOH HOH . 
U 9 HOH A 36 279 279 HOH HOH . 
U 9 HOH A 37 280 280 HOH HOH . 
U 9 HOH A 38 281 281 HOH HOH . 
U 9 HOH A 39 282 282 HOH HOH . 
U 9 HOH A 40 283 283 HOH HOH . 
U 9 HOH A 41 284 284 HOH HOH . 
U 9 HOH A 42 285 285 HOH HOH . 
U 9 HOH A 43 286 286 HOH HOH . 
U 9 HOH A 44 287 287 HOH HOH . 
U 9 HOH A 45 288 288 HOH HOH . 
U 9 HOH A 46 289 289 HOH HOH . 
U 9 HOH A 47 290 290 HOH HOH . 
U 9 HOH A 48 291 291 HOH HOH . 
U 9 HOH A 49 292 292 HOH HOH . 
U 9 HOH A 50 293 293 HOH HOH . 
U 9 HOH A 51 294 294 HOH HOH . 
U 9 HOH A 52 295 295 HOH HOH . 
U 9 HOH A 53 296 296 HOH HOH . 
U 9 HOH A 54 297 297 HOH HOH . 
U 9 HOH A 55 298 298 HOH HOH . 
U 9 HOH A 56 299 299 HOH HOH . 
U 9 HOH A 57 300 300 HOH HOH . 
U 9 HOH A 58 301 301 HOH HOH . 
U 9 HOH A 59 302 302 HOH HOH . 
U 9 HOH A 60 303 303 HOH HOH . 
U 9 HOH A 61 304 304 HOH HOH . 
U 9 HOH A 62 305 305 HOH HOH . 
U 9 HOH A 63 306 306 HOH HOH . 
U 9 HOH A 64 307 307 HOH HOH . 
U 9 HOH A 65 308 308 HOH HOH . 
U 9 HOH A 66 309 309 HOH HOH . 
U 9 HOH A 67 310 310 HOH HOH . 
U 9 HOH A 68 311 311 HOH HOH . 
U 9 HOH A 69 312 312 HOH HOH . 
U 9 HOH A 70 313 313 HOH HOH . 
U 9 HOH A 71 314 314 HOH HOH . 
U 9 HOH A 72 315 315 HOH HOH . 
U 9 HOH A 73 316 316 HOH HOH . 
U 9 HOH A 74 317 317 HOH HOH . 
U 9 HOH A 75 318 318 HOH HOH . 
U 9 HOH A 76 319 319 HOH HOH . 
U 9 HOH A 77 320 320 HOH HOH . 
U 9 HOH A 78 321 321 HOH HOH . 
U 9 HOH A 79 322 322 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 HTG . . . S 8 20.527 -5.656 37.81 1 87.83 ? C1 HTG 631 A 1 
HETATM 2 S S1 HTG . . . S 8 22.262 -5.046 37.489 1 87.35 ? S1 HTG 631 A 1 
HETATM 3 C C2 HTG . . . S 8 20.239 -7.054 37.091 1 87.27 ? C2 HTG 631 A 1 
HETATM 4 O O2 HTG . . . S 8 20.471 -6.906 35.589 1 86.6 ? O2 HTG 631 A 1 
HETATM 5 C C3 HTG . . . S 8 18.786 -7.611 37.287 1 87.37 ? C3 HTG 631 A 1 
HETATM 6 C C4 HTG . . . S 8 18.602 -7.803 38.876 1 88.2 ? C4 HTG 631 A 1 
HETATM 7 C C5 HTG . . . S 8 18.867 -6.39 39.663 1 88.72 ? C5 HTG 631 A 1 
HETATM 8 O O5 HTG . . . S 8 20.289 -5.906 39.32 1 89.07 ? O5 HTG 631 A 1 
HETATM 9 C C6 HTG . . . S 8 18.699 -6.615 41.23 1 88.28 ? C6 HTG 631 A 1 
HETATM 10 O O6 HTG . . . S 8 19.92 -7.014 41.908 1 85.86 ? O6 HTG 631 A 1 
HETATM 11 C C1' HTG . . . S 8 22.902 -3.508 38.224 1 86.14 ? C1' HTG 631 A 1 
HETATM 12 C C2' HTG . . . S 8 24.306 -3.436 37.651 1 85.98 ? C2' HTG 631 A 1 
HETATM 13 C C3' HTG . . . S 8 25.087 -2.245 38.137 1 85.38 ? C3' HTG 631 A 1 
HETATM 14 C C4' HTG . . . S 8 26.477 -2.207 37.524 1 85.13 ? C4' HTG 631 A 1 
HETATM 15 C C5' HTG . . . S 8 27.39 -3.231 38.138 1 85.45 ? C5' HTG 631 A 1 
HETATM 16 C C6' HTG . . . S 8 28.841 -2.862 37.955 1 85.48 ? C6' HTG 631 A 1 
HETATM 17 C C7' HTG . . . S 8 29.584 -3.93 37.199 1 85.55 ? C7' HTG 631 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           483 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           17 
#