data_3PL9 # _model_server_result.job_id N3axP2xxd3dIb662RkmYtg _model_server_result.datetime_utc '2024-11-24 23:16:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pl9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":632}' # _entry.id 3PL9 # _exptl.entry_id 3PL9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 294.408 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'heptyl 1-thio-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PL9 _cell.length_a 68.793 _cell.length_b 68.793 _cell.length_c 425.778 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 S N N ? 8 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 96 A GLU 96 1_555 B MG CLA . A CLA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc2 A OE1 GLU 159 A GLU 159 1_555 H MG CLA . A CLA 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc3 A OE1 GLU 197 A GLU 197 1_555 I MG CLA . A CLA 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc4 A OE1 GLN 214 A GLN 214 1_555 L MG CLA . A CLA 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc5 U O HOH . A HOH 245 1_555 F MG CHL . A CHL 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc6 U O HOH . A HOH 247 1_555 G MG CHL . A CHL 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc7 U O HOH . A HOH 248 1_555 E MG CHL . A CHL 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc8 U O HOH . A HOH 307 1_555 D MG CLA . A CLA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc9 J MG CLA . A CLA 611 1_555 R O3P G3P . A G3P 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc10 J MG CLA . A CLA 611 1_555 R O2P G3P . A G3P 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc11 N MG CLA . A CLA 615 1_555 R O4P G3P . A G3P 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? # _chem_comp.formula 'C13 H26 O5 S' _chem_comp.formula_weight 294.408 _chem_comp.id HTG _chem_comp.mon_nstd_flag . _chem_comp.name 'heptyl 1-thio-beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'HEPTYL 1-THIOHEXOPYRANOSIDE;heptyl 1-thio-beta-D-glucoside;heptyl 1-thio-D-glucoside;heptyl 1-thio-glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 S1 HTG sing 459 n n C1 C2 HTG sing 460 n n C1 O5 HTG sing 461 n n C1 H1 HTG sing 462 n n S1 C1' HTG sing 463 n n C2 O2 HTG sing 464 n n C2 C3 HTG sing 465 n n C2 H2 HTG sing 466 n n O2 HO2 HTG sing 467 n n C3 O3 HTG sing 468 n n C3 C4 HTG sing 469 n n C3 H3 HTG sing 470 n n O3 HO3 HTG sing 471 n n C4 O4 HTG sing 472 n n C4 C5 HTG sing 473 n n C4 H4 HTG sing 474 n n O4 HO4 HTG sing 475 n n C5 O5 HTG sing 476 n n C5 C6 HTG sing 477 n n C5 H5 HTG sing 478 n n C6 O6 HTG sing 479 n n C6 H61 HTG sing 480 n n C6 H62 HTG sing 481 n n O6 HO6 HTG sing 482 n n C1' C2' HTG sing 483 n n C1' "H1'1" HTG sing 484 n n C1' "H1'2" HTG sing 485 n n C2' C3' HTG sing 486 n n C2' "H2'1" HTG sing 487 n n C2' "H2'2" HTG sing 488 n n C3' C4' HTG sing 489 n n C3' "H3'1" HTG sing 490 n n C3' "H3'2" HTG sing 491 n n C4' C5' HTG sing 492 n n C4' "H4'1" HTG sing 493 n n C4' "H4'2" HTG sing 494 n n C5' C6' HTG sing 495 n n C5' "H5'1" HTG sing 496 n n C5' "H5'2" HTG sing 497 n n C6' C7' HTG sing 498 n n C6' "H6'1" HTG sing 499 n n C6' "H6'2" HTG sing 500 n n C7' "H7'1" HTG sing 501 n n C7' "H7'2" HTG sing 502 n n C7' "H7'3" HTG sing 503 n n # _atom_sites.entry_id 3PL9 _atom_sites.fract_transf_matrix[1][1] 0.014536 _atom_sites.fract_transf_matrix[1][2] 0.008393 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016785 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CLA A 1 602 602 CLA CLA . C 2 CLA A 1 603 603 CLA CLA . D 2 CLA A 1 604 604 CLA CLA . E 3 CHL A 1 606 606 CHL CHL . F 3 CHL A 1 607 607 CHL CHL . G 3 CHL A 1 608 608 CHL CHL . H 2 CLA A 1 609 609 CLA CLA . I 2 CLA A 1 610 610 CLA CLA . J 2 CLA A 1 611 611 CLA CLA . K 2 CLA A 1 612 612 CLA CLA . L 2 CLA A 1 613 613 CLA CLA . M 3 CHL A 1 614 614 CHL CHL . N 2 CLA A 1 615 615 CLA CLA . O 4 LUT A 1 620 620 LUT LUT . P 5 XAT A 1 622 622 XAT XAT . Q 6 NEX A 1 623 623 NEX NEX . R 7 G3P A 1 630 630 G3P G3P . S 8 HTG A 1 631 631 HTG HTG . T 8 HTG A 1 632 632 HTG HTG . U 9 HOH A 1 244 244 HOH HOH . U 9 HOH A 2 245 245 HOH HOH . U 9 HOH A 3 246 246 HOH HOH . U 9 HOH A 4 247 247 HOH HOH . U 9 HOH A 5 248 248 HOH HOH . U 9 HOH A 6 249 249 HOH HOH . U 9 HOH A 7 250 250 HOH HOH . U 9 HOH A 8 251 251 HOH HOH . U 9 HOH A 9 252 252 HOH HOH . U 9 HOH A 10 253 253 HOH HOH . U 9 HOH A 11 254 254 HOH HOH . U 9 HOH A 12 255 255 HOH HOH . U 9 HOH A 13 256 256 HOH HOH . U 9 HOH A 14 257 257 HOH HOH . U 9 HOH A 15 258 258 HOH HOH . U 9 HOH A 16 259 259 HOH HOH . U 9 HOH A 17 260 260 HOH HOH . U 9 HOH A 18 261 261 HOH HOH . U 9 HOH A 19 262 262 HOH HOH . U 9 HOH A 20 263 263 HOH HOH . U 9 HOH A 21 264 264 HOH HOH . U 9 HOH A 22 265 265 HOH HOH . U 9 HOH A 23 266 266 HOH HOH . U 9 HOH A 24 267 267 HOH HOH . U 9 HOH A 25 268 268 HOH HOH . U 9 HOH A 26 269 269 HOH HOH . U 9 HOH A 27 270 270 HOH HOH . U 9 HOH A 28 271 271 HOH HOH . U 9 HOH A 29 272 272 HOH HOH . U 9 HOH A 30 273 273 HOH HOH . U 9 HOH A 31 274 274 HOH HOH . U 9 HOH A 32 275 275 HOH HOH . U 9 HOH A 33 276 276 HOH HOH . U 9 HOH A 34 277 277 HOH HOH . U 9 HOH A 35 278 278 HOH HOH . U 9 HOH A 36 279 279 HOH HOH . U 9 HOH A 37 280 280 HOH HOH . U 9 HOH A 38 281 281 HOH HOH . U 9 HOH A 39 282 282 HOH HOH . U 9 HOH A 40 283 283 HOH HOH . U 9 HOH A 41 284 284 HOH HOH . U 9 HOH A 42 285 285 HOH HOH . U 9 HOH A 43 286 286 HOH HOH . U 9 HOH A 44 287 287 HOH HOH . U 9 HOH A 45 288 288 HOH HOH . U 9 HOH A 46 289 289 HOH HOH . U 9 HOH A 47 290 290 HOH HOH . U 9 HOH A 48 291 291 HOH HOH . U 9 HOH A 49 292 292 HOH HOH . U 9 HOH A 50 293 293 HOH HOH . U 9 HOH A 51 294 294 HOH HOH . U 9 HOH A 52 295 295 HOH HOH . U 9 HOH A 53 296 296 HOH HOH . U 9 HOH A 54 297 297 HOH HOH . U 9 HOH A 55 298 298 HOH HOH . U 9 HOH A 56 299 299 HOH HOH . U 9 HOH A 57 300 300 HOH HOH . U 9 HOH A 58 301 301 HOH HOH . U 9 HOH A 59 302 302 HOH HOH . U 9 HOH A 60 303 303 HOH HOH . U 9 HOH A 61 304 304 HOH HOH . U 9 HOH A 62 305 305 HOH HOH . U 9 HOH A 63 306 306 HOH HOH . U 9 HOH A 64 307 307 HOH HOH . U 9 HOH A 65 308 308 HOH HOH . U 9 HOH A 66 309 309 HOH HOH . U 9 HOH A 67 310 310 HOH HOH . U 9 HOH A 68 311 311 HOH HOH . U 9 HOH A 69 312 312 HOH HOH . U 9 HOH A 70 313 313 HOH HOH . U 9 HOH A 71 314 314 HOH HOH . U 9 HOH A 72 315 315 HOH HOH . U 9 HOH A 73 316 316 HOH HOH . U 9 HOH A 74 317 317 HOH HOH . U 9 HOH A 75 318 318 HOH HOH . U 9 HOH A 76 319 319 HOH HOH . U 9 HOH A 77 320 320 HOH HOH . U 9 HOH A 78 321 321 HOH HOH . U 9 HOH A 79 322 322 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HTG . . . T 8 15.59 -16.142 27.148 1 87.83 ? C1 HTG 632 A 1 HETATM 2 S S1 HTG . . . T 8 16.85 -17.445 27.449 1 87.35 ? S1 HTG 632 A 1 HETATM 3 C C2 HTG . . . T 8 14.988 -16.208 25.641 1 87.27 ? C2 HTG 632 A 1 HETATM 4 O O2 HTG . . . T 8 16.07 -16.005 24.696 1 86.6 ? O2 HTG 632 A 1 HETATM 5 C C3 HTG . . . T 8 13.83 -15.1 25.408 1 87.37 ? C3 HTG 632 A 1 HETATM 6 O O3 HTG . . . T 8 13.34 -15.161 24.053 1 86.68 ? O3 HTG 632 A 1 HETATM 7 C C4 HTG . . . T 8 12.626 -15.374 26.475 1 88.2 ? C4 HTG 632 A 1 HETATM 8 O O4 HTG . . . T 8 11.57 -14.396 26.271 1 89.49 ? O4 HTG 632 A 1 HETATM 9 C C5 HTG . . . T 8 13.169 -15.312 28.002 1 88.72 ? C5 HTG 632 A 1 HETATM 10 O O5 HTG . . . T 8 14.308 -16.35 28.144 1 89.07 ? O5 HTG 632 A 1 HETATM 11 C C6 HTG . . . T 8 11.934 -15.605 29.019 1 88.28 ? C6 HTG 632 A 1 HETATM 12 O O6 HTG . . . T 8 12.25 -15.695 30.443 1 85.86 ? O6 HTG 632 A 1 HETATM 13 C C1' HTG . . . T 8 17.669 -17.668 29.06 1 86.14 ? C1' HTG 632 A 1 HETATM 14 C C2' HTG . . . T 8 18.586 -18.87 28.84 1 85.98 ? C2' HTG 632 A 1 HETATM 15 C C3' HTG . . . T 8 19.365 -19.254 30.079 1 85.38 ? C3' HTG 632 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 1029 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #