data_3PLX # _model_server_result.job_id '_VZPxNdrRrSk6YtcLZsTtQ' _model_server_result.datetime_utc '2025-04-19 02:38:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3plx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":127}' # _entry.id 3PLX # _exptl.entry_id 3PLX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PLX _cell.length_a 82.099 _cell.length_b 82.099 _cell.length_c 95.38 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PLX _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id PYR _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id PYR _struct_conn.ptnr1_auth_seq_id 25 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id ILE _struct_conn.ptnr2_label_seq_id 2 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id ILE _struct_conn.ptnr2_auth_seq_id 26 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.329 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 243 n n C1 C2 PEG sing 244 n n C1 H11 PEG sing 245 n n C1 H12 PEG sing 246 n n O1 HO1 PEG sing 247 n n C2 O2 PEG sing 248 n n C2 H21 PEG sing 249 n n C2 H22 PEG sing 250 n n O2 C3 PEG sing 251 n n C3 C4 PEG sing 252 n n C3 H31 PEG sing 253 n n C3 H32 PEG sing 254 n n C4 O4 PEG sing 255 n n C4 H41 PEG sing 256 n n C4 H42 PEG sing 257 n n O4 HO4 PEG sing 258 n n # _atom_sites.entry_id 3PLX _atom_sites.fract_transf_matrix[1][1] 0.01218 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01218 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ACT B 1 1 1 ACT ACT . D 4 PEG B 1 127 127 PEG PEG . E 5 HOH A 1 25 25 HOH HOH . E 5 HOH A 2 29 29 HOH HOH . E 5 HOH A 3 31 31 HOH HOH . E 5 HOH A 4 36 36 HOH HOH . E 5 HOH A 5 41 41 HOH HOH . E 5 HOH A 6 42 42 HOH HOH . E 5 HOH A 7 46 46 HOH HOH . E 5 HOH A 8 49 49 HOH HOH . E 5 HOH A 9 50 50 HOH HOH . E 5 HOH A 10 55 55 HOH HOH . E 5 HOH A 11 57 57 HOH HOH . E 5 HOH A 12 61 61 HOH HOH . E 5 HOH A 13 63 63 HOH HOH . E 5 HOH A 14 64 64 HOH HOH . E 5 HOH A 15 67 67 HOH HOH . E 5 HOH A 16 74 74 HOH HOH . E 5 HOH A 17 75 75 HOH HOH . E 5 HOH A 18 79 79 HOH HOH . E 5 HOH A 19 88 88 HOH HOH . E 5 HOH A 20 91 91 HOH HOH . F 5 HOH B 1 3 3 HOH HOH . F 5 HOH B 2 4 4 HOH HOH . F 5 HOH B 3 5 5 HOH HOH . F 5 HOH B 4 6 6 HOH HOH . F 5 HOH B 5 7 7 HOH HOH . F 5 HOH B 6 8 8 HOH HOH . F 5 HOH B 7 9 9 HOH HOH . F 5 HOH B 8 10 10 HOH HOH . F 5 HOH B 9 11 11 HOH HOH . F 5 HOH B 10 12 12 HOH HOH . F 5 HOH B 11 13 13 HOH HOH . F 5 HOH B 12 14 14 HOH HOH . F 5 HOH B 13 15 15 HOH HOH . F 5 HOH B 14 16 16 HOH HOH . F 5 HOH B 15 17 17 HOH HOH . F 5 HOH B 16 18 18 HOH HOH . F 5 HOH B 17 19 19 HOH HOH . F 5 HOH B 18 20 20 HOH HOH . F 5 HOH B 19 21 21 HOH HOH . F 5 HOH B 20 22 22 HOH HOH . F 5 HOH B 21 23 23 HOH HOH . F 5 HOH B 22 24 24 HOH HOH . F 5 HOH B 23 129 129 HOH HOH . F 5 HOH B 24 130 130 HOH HOH . F 5 HOH B 25 131 131 HOH HOH . F 5 HOH B 26 132 132 HOH HOH . F 5 HOH B 27 133 133 HOH HOH . F 5 HOH B 28 134 134 HOH HOH . F 5 HOH B 29 135 135 HOH HOH . F 5 HOH B 30 136 136 HOH HOH . F 5 HOH B 31 137 137 HOH HOH . F 5 HOH B 32 138 138 HOH HOH . F 5 HOH B 33 139 139 HOH HOH . F 5 HOH B 34 140 140 HOH HOH . F 5 HOH B 35 141 141 HOH HOH . F 5 HOH B 36 142 142 HOH HOH . F 5 HOH B 37 143 143 HOH HOH . F 5 HOH B 38 144 144 HOH HOH . F 5 HOH B 39 145 145 HOH HOH . F 5 HOH B 40 146 146 HOH HOH . F 5 HOH B 41 147 147 HOH HOH . F 5 HOH B 42 148 148 HOH HOH . F 5 HOH B 43 149 149 HOH HOH . F 5 HOH B 44 150 150 HOH HOH . F 5 HOH B 45 151 151 HOH HOH . F 5 HOH B 46 152 152 HOH HOH . F 5 HOH B 47 153 153 HOH HOH . F 5 HOH B 48 154 154 HOH HOH . F 5 HOH B 49 155 155 HOH HOH . F 5 HOH B 50 156 156 HOH HOH . F 5 HOH B 51 157 157 HOH HOH . F 5 HOH B 52 158 158 HOH HOH . F 5 HOH B 53 159 159 HOH HOH . F 5 HOH B 54 160 160 HOH HOH . F 5 HOH B 55 161 161 HOH HOH . F 5 HOH B 56 162 162 HOH HOH . F 5 HOH B 57 163 163 HOH HOH . F 5 HOH B 58 164 164 HOH HOH . F 5 HOH B 59 165 165 HOH HOH . F 5 HOH B 60 166 166 HOH HOH . F 5 HOH B 61 167 167 HOH HOH . F 5 HOH B 62 168 168 HOH HOH . F 5 HOH B 63 169 169 HOH HOH . F 5 HOH B 64 170 170 HOH HOH . F 5 HOH B 65 171 171 HOH HOH . F 5 HOH B 66 172 172 HOH HOH . F 5 HOH B 67 173 173 HOH HOH . F 5 HOH B 68 174 174 HOH HOH . F 5 HOH B 69 175 175 HOH HOH . F 5 HOH B 70 176 176 HOH HOH . F 5 HOH B 71 177 177 HOH HOH . F 5 HOH B 72 178 178 HOH HOH . F 5 HOH B 73 179 179 HOH HOH . F 5 HOH B 74 180 180 HOH HOH . F 5 HOH B 75 181 181 HOH HOH . F 5 HOH B 76 182 182 HOH HOH . F 5 HOH B 77 183 183 HOH HOH . F 5 HOH B 78 184 184 HOH HOH . F 5 HOH B 79 185 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . D 4 8.094 27.613 37.339 1 56.49 ? C1 PEG 127 B 1 HETATM 2 O O1 PEG . . . D 4 7.024 28.438 37.821 1 61.58 ? O1 PEG 127 B 1 HETATM 3 C C2 PEG . . . D 4 9.342 27.854 38.181 1 53.66 ? C2 PEG 127 B 1 HETATM 4 O O2 PEG . . . D 4 10.167 26.688 38.196 1 55.77 ? O2 PEG 127 B 1 HETATM 5 C C3 PEG . . . D 4 11.241 26.851 39.118 1 59.75 ? C3 PEG 127 B 1 HETATM 6 C C4 PEG . . . D 4 11.457 25.562 39.9 1 62.07 ? C4 PEG 127 B 1 HETATM 7 O O4 PEG . . . D 4 12.33 25.842 41.001 1 65.84 ? O4 PEG 127 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 1070 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 7 #