data_3PLZ # _model_server_result.job_id OC6I8p-Gh83cTutf3dbsFA _model_server_result.datetime_utc '2024-11-22 10:25:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3plz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2}' # _entry.id 3PLZ # _exptl.entry_id 3PLZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.71 _cell.angle_gamma 90 _cell.entry_id 3PLZ _cell.length_a 52.667 _cell.length_b 89.054 _cell.length_c 65.453 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PLZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 150 n n C1 C2 EDO sing 151 n n C1 H11 EDO sing 152 n n C1 H12 EDO sing 153 n n O1 HO1 EDO sing 154 n n C2 O2 EDO sing 155 n n C2 H21 EDO sing 156 n n C2 H22 EDO sing 157 n n O2 HO2 EDO sing 158 n n # _atom_sites.entry_id 3PLZ _atom_sites.fract_transf_matrix[1][1] 0.018987 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003936 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011229 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 470 A 1 1 1 470 470 . F 4 EDO A 1 2 2 EDO EDO . G 3 470 B 1 1 1 470 470 . H 4 EDO B 1 2 2 EDO EDO . I 5 HOH A 1 10 10 HOH HOH . I 5 HOH A 2 11 11 HOH HOH . I 5 HOH A 3 12 12 HOH HOH . I 5 HOH A 4 13 13 HOH HOH . I 5 HOH A 5 14 14 HOH HOH . I 5 HOH A 6 15 15 HOH HOH . I 5 HOH A 7 16 16 HOH HOH . I 5 HOH A 8 17 17 HOH HOH . I 5 HOH A 9 18 18 HOH HOH . I 5 HOH A 10 19 19 HOH HOH . I 5 HOH A 11 20 20 HOH HOH . I 5 HOH A 12 21 21 HOH HOH . I 5 HOH A 13 22 22 HOH HOH . I 5 HOH A 14 23 23 HOH HOH . I 5 HOH A 15 24 24 HOH HOH . I 5 HOH A 16 25 25 HOH HOH . I 5 HOH A 17 26 26 HOH HOH . I 5 HOH A 18 27 27 HOH HOH . I 5 HOH A 19 28 28 HOH HOH . I 5 HOH A 20 29 29 HOH HOH . I 5 HOH A 21 30 30 HOH HOH . I 5 HOH A 22 31 31 HOH HOH . I 5 HOH A 23 32 32 HOH HOH . I 5 HOH A 24 33 33 HOH HOH . I 5 HOH A 25 34 34 HOH HOH . I 5 HOH A 26 35 35 HOH HOH . I 5 HOH A 27 36 36 HOH HOH . I 5 HOH A 28 37 37 HOH HOH . I 5 HOH A 29 38 38 HOH HOH . I 5 HOH A 30 39 39 HOH HOH . I 5 HOH A 31 40 40 HOH HOH . I 5 HOH A 32 41 41 HOH HOH . I 5 HOH A 33 42 42 HOH HOH . I 5 HOH A 34 43 43 HOH HOH . I 5 HOH A 35 44 44 HOH HOH . I 5 HOH A 36 45 45 HOH HOH . I 5 HOH A 37 46 46 HOH HOH . I 5 HOH A 38 47 47 HOH HOH . I 5 HOH A 39 48 48 HOH HOH . I 5 HOH A 40 49 49 HOH HOH . I 5 HOH A 41 51 51 HOH HOH . I 5 HOH A 42 52 52 HOH HOH . I 5 HOH A 43 53 53 HOH HOH . I 5 HOH A 44 54 54 HOH HOH . I 5 HOH A 45 55 55 HOH HOH . I 5 HOH A 46 56 56 HOH HOH . I 5 HOH A 47 57 57 HOH HOH . I 5 HOH A 48 58 58 HOH HOH . I 5 HOH A 49 59 59 HOH HOH . I 5 HOH A 50 60 60 HOH HOH . I 5 HOH A 51 61 61 HOH HOH . I 5 HOH A 52 62 62 HOH HOH . I 5 HOH A 53 63 63 HOH HOH . I 5 HOH A 54 64 64 HOH HOH . I 5 HOH A 55 65 65 HOH HOH . I 5 HOH A 56 66 66 HOH HOH . I 5 HOH A 57 67 67 HOH HOH . I 5 HOH A 58 68 68 HOH HOH . I 5 HOH A 59 69 69 HOH HOH . I 5 HOH A 60 70 70 HOH HOH . I 5 HOH A 61 71 71 HOH HOH . I 5 HOH A 62 72 72 HOH HOH . I 5 HOH A 63 73 73 HOH HOH . I 5 HOH A 64 74 74 HOH HOH . I 5 HOH A 65 75 75 HOH HOH . I 5 HOH A 66 76 76 HOH HOH . I 5 HOH A 67 77 77 HOH HOH . I 5 HOH A 68 78 78 HOH HOH . I 5 HOH A 69 79 79 HOH HOH . I 5 HOH A 70 80 80 HOH HOH . I 5 HOH A 71 81 81 HOH HOH . I 5 HOH A 72 82 82 HOH HOH . I 5 HOH A 73 83 83 HOH HOH . I 5 HOH A 74 84 84 HOH HOH . I 5 HOH A 75 85 85 HOH HOH . I 5 HOH A 76 86 86 HOH HOH . I 5 HOH A 77 87 87 HOH HOH . I 5 HOH A 78 88 88 HOH HOH . I 5 HOH A 79 89 89 HOH HOH . I 5 HOH A 80 90 90 HOH HOH . I 5 HOH A 81 91 91 HOH HOH . I 5 HOH A 82 92 92 HOH HOH . I 5 HOH A 83 93 93 HOH HOH . I 5 HOH A 84 94 94 HOH HOH . I 5 HOH A 85 95 95 HOH HOH . I 5 HOH A 86 96 96 HOH HOH . I 5 HOH A 87 97 97 HOH HOH . I 5 HOH A 88 98 98 HOH HOH . I 5 HOH A 89 99 99 HOH HOH . I 5 HOH A 90 100 100 HOH HOH . I 5 HOH A 91 101 101 HOH HOH . I 5 HOH A 92 102 102 HOH HOH . I 5 HOH A 93 103 103 HOH HOH . I 5 HOH A 94 104 104 HOH HOH . I 5 HOH A 95 105 105 HOH HOH . I 5 HOH A 96 106 106 HOH HOH . I 5 HOH A 97 107 107 HOH HOH . I 5 HOH A 98 108 108 HOH HOH . I 5 HOH A 99 109 109 HOH HOH . I 5 HOH A 100 110 110 HOH HOH . I 5 HOH A 101 111 111 HOH HOH . I 5 HOH A 102 112 112 HOH HOH . I 5 HOH A 103 113 113 HOH HOH . I 5 HOH A 104 114 114 HOH HOH . I 5 HOH A 105 115 115 HOH HOH . I 5 HOH A 106 116 116 HOH HOH . I 5 HOH A 107 117 117 HOH HOH . I 5 HOH A 108 118 118 HOH HOH . I 5 HOH A 109 119 119 HOH HOH . I 5 HOH A 110 120 120 HOH HOH . I 5 HOH A 111 121 121 HOH HOH . I 5 HOH A 112 122 122 HOH HOH . I 5 HOH A 113 123 123 HOH HOH . I 5 HOH A 114 124 124 HOH HOH . I 5 HOH A 115 125 125 HOH HOH . I 5 HOH A 116 126 126 HOH HOH . I 5 HOH A 117 127 127 HOH HOH . I 5 HOH A 118 128 128 HOH HOH . I 5 HOH A 119 129 129 HOH HOH . I 5 HOH A 120 130 130 HOH HOH . I 5 HOH A 121 131 131 HOH HOH . I 5 HOH A 122 132 132 HOH HOH . I 5 HOH A 123 133 133 HOH HOH . I 5 HOH A 124 134 134 HOH HOH . I 5 HOH A 125 135 135 HOH HOH . I 5 HOH A 126 136 136 HOH HOH . I 5 HOH A 127 137 137 HOH HOH . I 5 HOH A 128 138 138 HOH HOH . I 5 HOH A 129 139 139 HOH HOH . I 5 HOH A 130 140 140 HOH HOH . I 5 HOH A 131 141 141 HOH HOH . I 5 HOH A 132 142 142 HOH HOH . I 5 HOH A 133 143 143 HOH HOH . I 5 HOH A 134 144 144 HOH HOH . I 5 HOH A 135 145 145 HOH HOH . I 5 HOH A 136 146 146 HOH HOH . I 5 HOH A 137 150 150 HOH HOH . J 5 HOH C 1 10 10 HOH HOH . J 5 HOH C 2 11 11 HOH HOH . J 5 HOH C 3 12 12 HOH HOH . J 5 HOH C 4 13 13 HOH HOH . J 5 HOH C 5 14 14 HOH HOH . J 5 HOH C 6 15 15 HOH HOH . J 5 HOH C 7 16 16 HOH HOH . J 5 HOH C 8 17 17 HOH HOH . J 5 HOH C 9 18 18 HOH HOH . J 5 HOH C 10 19 19 HOH HOH . K 5 HOH B 1 10 10 HOH HOH . K 5 HOH B 2 11 11 HOH HOH . K 5 HOH B 3 12 12 HOH HOH . K 5 HOH B 4 13 13 HOH HOH . K 5 HOH B 5 14 14 HOH HOH . K 5 HOH B 6 15 15 HOH HOH . K 5 HOH B 7 16 16 HOH HOH . K 5 HOH B 8 17 17 HOH HOH . K 5 HOH B 9 18 18 HOH HOH . K 5 HOH B 10 19 19 HOH HOH . K 5 HOH B 11 20 20 HOH HOH . K 5 HOH B 12 21 21 HOH HOH . K 5 HOH B 13 22 22 HOH HOH . K 5 HOH B 14 23 23 HOH HOH . K 5 HOH B 15 24 24 HOH HOH . K 5 HOH B 16 25 25 HOH HOH . K 5 HOH B 17 26 26 HOH HOH . K 5 HOH B 18 27 27 HOH HOH . K 5 HOH B 19 28 28 HOH HOH . K 5 HOH B 20 29 29 HOH HOH . K 5 HOH B 21 30 30 HOH HOH . K 5 HOH B 22 31 31 HOH HOH . K 5 HOH B 23 32 32 HOH HOH . K 5 HOH B 24 33 33 HOH HOH . K 5 HOH B 25 34 34 HOH HOH . K 5 HOH B 26 35 35 HOH HOH . K 5 HOH B 27 36 36 HOH HOH . K 5 HOH B 28 37 37 HOH HOH . K 5 HOH B 29 38 38 HOH HOH . K 5 HOH B 30 39 39 HOH HOH . K 5 HOH B 31 40 40 HOH HOH . K 5 HOH B 32 41 41 HOH HOH . K 5 HOH B 33 42 42 HOH HOH . K 5 HOH B 34 43 43 HOH HOH . K 5 HOH B 35 44 44 HOH HOH . K 5 HOH B 36 45 45 HOH HOH . K 5 HOH B 37 46 46 HOH HOH . K 5 HOH B 38 47 47 HOH HOH . K 5 HOH B 39 48 48 HOH HOH . K 5 HOH B 40 49 49 HOH HOH . K 5 HOH B 41 50 50 HOH HOH . K 5 HOH B 42 51 51 HOH HOH . K 5 HOH B 43 52 52 HOH HOH . K 5 HOH B 44 53 53 HOH HOH . K 5 HOH B 45 54 54 HOH HOH . K 5 HOH B 46 55 55 HOH HOH . K 5 HOH B 47 56 56 HOH HOH . K 5 HOH B 48 57 57 HOH HOH . K 5 HOH B 49 58 58 HOH HOH . K 5 HOH B 50 59 59 HOH HOH . K 5 HOH B 51 60 60 HOH HOH . K 5 HOH B 52 61 61 HOH HOH . K 5 HOH B 53 62 62 HOH HOH . K 5 HOH B 54 63 63 HOH HOH . K 5 HOH B 55 64 64 HOH HOH . K 5 HOH B 56 65 65 HOH HOH . K 5 HOH B 57 66 66 HOH HOH . K 5 HOH B 58 67 67 HOH HOH . K 5 HOH B 59 68 68 HOH HOH . K 5 HOH B 60 69 69 HOH HOH . K 5 HOH B 61 70 70 HOH HOH . K 5 HOH B 62 71 71 HOH HOH . K 5 HOH B 63 72 72 HOH HOH . K 5 HOH B 64 73 73 HOH HOH . K 5 HOH B 65 74 74 HOH HOH . K 5 HOH B 66 75 75 HOH HOH . K 5 HOH B 67 76 76 HOH HOH . K 5 HOH B 68 77 77 HOH HOH . K 5 HOH B 69 78 78 HOH HOH . K 5 HOH B 70 79 79 HOH HOH . K 5 HOH B 71 80 80 HOH HOH . K 5 HOH B 72 81 81 HOH HOH . K 5 HOH B 73 82 82 HOH HOH . K 5 HOH B 74 83 83 HOH HOH . K 5 HOH B 75 84 84 HOH HOH . K 5 HOH B 76 85 85 HOH HOH . K 5 HOH B 77 86 86 HOH HOH . K 5 HOH B 78 87 87 HOH HOH . K 5 HOH B 79 88 88 HOH HOH . K 5 HOH B 80 89 89 HOH HOH . K 5 HOH B 81 90 90 HOH HOH . K 5 HOH B 82 91 91 HOH HOH . K 5 HOH B 83 92 92 HOH HOH . K 5 HOH B 84 93 93 HOH HOH . K 5 HOH B 85 94 94 HOH HOH . K 5 HOH B 86 95 95 HOH HOH . K 5 HOH B 87 96 96 HOH HOH . K 5 HOH B 88 97 97 HOH HOH . K 5 HOH B 89 98 98 HOH HOH . K 5 HOH B 90 99 99 HOH HOH . K 5 HOH B 91 100 100 HOH HOH . K 5 HOH B 92 101 101 HOH HOH . K 5 HOH B 93 102 102 HOH HOH . K 5 HOH B 94 103 103 HOH HOH . K 5 HOH B 95 104 104 HOH HOH . K 5 HOH B 96 105 105 HOH HOH . K 5 HOH B 97 106 106 HOH HOH . K 5 HOH B 98 107 107 HOH HOH . K 5 HOH B 99 108 108 HOH HOH . K 5 HOH B 100 109 109 HOH HOH . K 5 HOH B 101 110 110 HOH HOH . K 5 HOH B 102 111 111 HOH HOH . K 5 HOH B 103 112 112 HOH HOH . K 5 HOH B 104 113 113 HOH HOH . K 5 HOH B 105 114 114 HOH HOH . K 5 HOH B 106 115 115 HOH HOH . K 5 HOH B 107 116 116 HOH HOH . K 5 HOH B 108 117 117 HOH HOH . K 5 HOH B 109 118 118 HOH HOH . K 5 HOH B 110 119 119 HOH HOH . K 5 HOH B 111 120 120 HOH HOH . K 5 HOH B 112 121 121 HOH HOH . K 5 HOH B 113 122 122 HOH HOH . K 5 HOH B 114 123 123 HOH HOH . K 5 HOH B 115 124 124 HOH HOH . K 5 HOH B 116 125 125 HOH HOH . K 5 HOH B 117 126 126 HOH HOH . K 5 HOH B 118 127 127 HOH HOH . K 5 HOH B 119 128 128 HOH HOH . K 5 HOH B 120 129 129 HOH HOH . K 5 HOH B 121 130 130 HOH HOH . K 5 HOH B 122 131 131 HOH HOH . K 5 HOH B 123 132 132 HOH HOH . K 5 HOH B 124 133 133 HOH HOH . K 5 HOH B 125 134 134 HOH HOH . K 5 HOH B 126 135 135 HOH HOH . K 5 HOH B 127 136 136 HOH HOH . K 5 HOH B 128 137 137 HOH HOH . K 5 HOH B 129 138 138 HOH HOH . K 5 HOH B 130 139 139 HOH HOH . K 5 HOH B 131 140 140 HOH HOH . K 5 HOH B 132 141 141 HOH HOH . K 5 HOH B 133 142 142 HOH HOH . K 5 HOH B 134 143 143 HOH HOH . K 5 HOH B 135 144 144 HOH HOH . K 5 HOH B 136 145 145 HOH HOH . K 5 HOH B 137 146 146 HOH HOH . K 5 HOH B 138 147 147 HOH HOH . K 5 HOH B 139 148 148 HOH HOH . K 5 HOH B 140 149 149 HOH HOH . K 5 HOH B 141 151 151 HOH HOH . K 5 HOH B 142 152 152 HOH HOH . K 5 HOH B 143 153 153 HOH HOH . K 5 HOH B 144 154 154 HOH HOH . K 5 HOH B 145 155 155 HOH HOH . K 5 HOH B 146 156 156 HOH HOH . K 5 HOH B 147 157 157 HOH HOH . K 5 HOH B 148 158 158 HOH HOH . L 5 HOH D 1 10 10 HOH HOH . L 5 HOH D 2 11 11 HOH HOH . L 5 HOH D 3 12 12 HOH HOH . L 5 HOH D 4 13 13 HOH HOH . L 5 HOH D 5 14 14 HOH HOH . L 5 HOH D 6 15 15 HOH HOH . L 5 HOH D 7 16 16 HOH HOH . L 5 HOH D 8 17 17 HOH HOH . L 5 HOH D 9 18 18 HOH HOH . L 5 HOH D 10 50 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 -3.146 5.559 5.269 1 59.08 ? C1 EDO 2 A 1 HETATM 2 O O1 EDO . . . F 4 -3.542 6.446 6.322 1 59.37 ? O1 EDO 2 A 1 HETATM 3 C C2 EDO . . . F 4 -2.822 6.361 4.014 1 59.25 ? C2 EDO 2 A 1 HETATM 4 O O2 EDO . . . F 4 -3.926 6.304 3.104 1 59.55 ? O2 EDO 2 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #