data_3PM0 # _model_server_result.job_id 5Tt_H8HWemsEtSuTyb3Qgw _model_server_result.datetime_utc '2024-10-17 04:35:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pm0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":900}' # _entry.id 3PM0 # _exptl.entry_id 3PM0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PM0 _cell.length_a 84.17 _cell.length_b 103.98 _cell.length_c 62.97 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PM0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 430 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 470 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 900 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.354 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 165 n n CHA C4D HEM doub 166 n n CHA HHA HEM sing 167 n n CHB C4A HEM sing 168 n n CHB C1B HEM doub 169 n n CHB HHB HEM sing 170 n n CHC C4B HEM sing 171 n n CHC C1C HEM doub 172 n n CHC HHC HEM sing 173 n n CHD C4C HEM doub 174 n n CHD C1D HEM sing 175 n n CHD HHD HEM sing 176 n n C1A C2A HEM doub 177 n y C1A NA HEM sing 178 n y C2A C3A HEM sing 179 n y C2A CAA HEM sing 180 n n C3A C4A HEM doub 181 n y C3A CMA HEM sing 182 n n C4A NA HEM sing 183 n y CMA HMA HEM sing 184 n n CMA HMAA HEM sing 185 n n CMA HMAB HEM sing 186 n n CAA CBA HEM sing 187 n n CAA HAA HEM sing 188 n n CAA HAAA HEM sing 189 n n CBA CGA HEM sing 190 n n CBA HBA HEM sing 191 n n CBA HBAA HEM sing 192 n n CGA O1A HEM doub 193 n n CGA O2A HEM sing 194 n n C1B C2B HEM sing 195 n n C1B NB HEM sing 196 n n C2B C3B HEM doub 197 n n C2B CMB HEM sing 198 n n C3B C4B HEM sing 199 n n C3B CAB HEM sing 200 n n C4B NB HEM doub 201 n n CMB HMB HEM sing 202 n n CMB HMBA HEM sing 203 n n CMB HMBB HEM sing 204 n n CAB CBB HEM doub 205 n n CAB HAB HEM sing 206 n n CBB HBB HEM sing 207 n n CBB HBBA HEM sing 208 n n C1C C2C HEM sing 209 n y C1C NC HEM sing 210 n y C2C C3C HEM doub 211 n y C2C CMC HEM sing 212 n n C3C C4C HEM sing 213 n y C3C CAC HEM sing 214 n n C4C NC HEM sing 215 n y CMC HMC HEM sing 216 n n CMC HMCA HEM sing 217 n n CMC HMCB HEM sing 218 n n CAC CBC HEM doub 219 n n CAC HAC HEM sing 220 n n CBC HBC HEM sing 221 n n CBC HBCA HEM sing 222 n n C1D C2D HEM sing 223 n n C1D ND HEM doub 224 n n C2D C3D HEM doub 225 n n C2D CMD HEM sing 226 n n C3D C4D HEM sing 227 n n C3D CAD HEM sing 228 n n C4D ND HEM sing 229 n n CMD HMD HEM sing 230 n n CMD HMDA HEM sing 231 n n CMD HMDB HEM sing 232 n n CAD CBD HEM sing 233 n n CAD HAD HEM sing 234 n n CAD HADA HEM sing 235 n n CBD CGD HEM sing 236 n n CBD HBD HEM sing 237 n n CBD HBDA HEM sing 238 n n CGD O1D HEM doub 239 n n CGD O2D HEM sing 240 n n O2A H2A HEM sing 241 n n O2D H2D HEM sing 242 n n FE NA HEM sing 243 n n FE NB HEM sing 244 n n FE NC HEM sing 245 n n FE ND HEM sing 246 n n # _atom_sites.entry_id 3PM0 _atom_sites.fract_transf_matrix[1][1] 0.011881 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009617 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 900 900 HEM HEM . C 3 BHF A 1 800 800 BHF BHF . D 4 HOH A 1 1 1 HOH HOH . D 4 HOH A 2 2 2 HOH HOH . D 4 HOH A 3 3 3 HOH HOH . D 4 HOH A 4 4 4 HOH HOH . D 4 HOH A 5 5 5 HOH HOH . D 4 HOH A 6 6 6 HOH HOH . D 4 HOH A 7 7 7 HOH HOH . D 4 HOH A 8 8 8 HOH HOH . D 4 HOH A 9 9 9 HOH HOH . D 4 HOH A 10 10 10 HOH HOH . D 4 HOH A 11 11 11 HOH HOH . D 4 HOH A 12 12 12 HOH HOH . D 4 HOH A 13 13 13 HOH HOH . D 4 HOH A 14 15 15 HOH HOH . D 4 HOH A 15 16 16 HOH HOH . D 4 HOH A 16 17 17 HOH HOH . D 4 HOH A 17 18 18 HOH HOH . D 4 HOH A 18 19 19 HOH HOH . D 4 HOH A 19 20 20 HOH HOH . D 4 HOH A 20 21 21 HOH HOH . D 4 HOH A 21 22 22 HOH HOH . D 4 HOH A 22 23 23 HOH HOH . D 4 HOH A 23 24 24 HOH HOH . D 4 HOH A 24 25 25 HOH HOH . D 4 HOH A 25 26 26 HOH HOH . D 4 HOH A 26 27 27 HOH HOH . D 4 HOH A 27 28 28 HOH HOH . D 4 HOH A 28 29 29 HOH HOH . D 4 HOH A 29 30 30 HOH HOH . D 4 HOH A 30 31 31 HOH HOH . D 4 HOH A 31 32 32 HOH HOH . D 4 HOH A 32 33 33 HOH HOH . D 4 HOH A 33 34 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -19.699 13.474 -19.012 1 27.96 ? CHA HEM 900 A 1 HETATM 2 C CHB HEM . . . B 2 -22.509 13.782 -15.294 1 26.63 ? CHB HEM 900 A 1 HETATM 3 C CHC HEM . . . B 2 -18.985 15.553 -12.796 1 27.56 ? CHC HEM 900 A 1 HETATM 4 C CHD HEM . . . B 2 -16.081 14.986 -16.481 1 27.51 ? CHD HEM 900 A 1 HETATM 5 C C1A HEM . . . B 2 -20.835 13.252 -18.259 1 29.16 ? C1A HEM 900 A 1 HETATM 6 C C2A HEM . . . B 2 -22.155 12.996 -18.724 1 29.99 ? C2A HEM 900 A 1 HETATM 7 C C3A HEM . . . B 2 -22.971 13.205 -17.632 1 28.4 ? C3A HEM 900 A 1 HETATM 8 C C4A HEM . . . B 2 -22.124 13.57 -16.579 1 28.9 ? C4A HEM 900 A 1 HETATM 9 C CMA HEM . . . B 2 -24.534 13.07 -17.552 1 25.71 ? CMA HEM 900 A 1 HETATM 10 C CAA HEM . . . B 2 -22.599 12.577 -20.14 1 33.72 ? CAA HEM 900 A 1 HETATM 11 C CBA HEM . . . B 2 -22.684 11.114 -20.429 1 37.27 ? CBA HEM 900 A 1 HETATM 12 C CGA HEM . . . B 2 -23.195 10.782 -21.834 1 40.75 ? CGA HEM 900 A 1 HETATM 13 O O1A HEM . . . B 2 -23.621 9.641 -22.066 1 41.44 ? O1A HEM 900 A 1 HETATM 14 O O2A HEM . . . B 2 -23.229 11.634 -22.733 1 41.88 ? O2A HEM 900 A 1 HETATM 15 C C1B HEM . . . B 2 -21.901 14.462 -14.284 1 26.75 ? C1B HEM 900 A 1 HETATM 16 C C2B HEM . . . B 2 -22.498 14.845 -13.048 1 28.76 ? C2B HEM 900 A 1 HETATM 17 C C3B HEM . . . B 2 -21.453 15.451 -12.331 1 28.58 ? C3B HEM 900 A 1 HETATM 18 C C4B HEM . . . B 2 -20.31 15.374 -13.2 1 28.15 ? C4B HEM 900 A 1 HETATM 19 C CMB HEM . . . B 2 -23.949 14.618 -12.659 1 27.78 ? CMB HEM 900 A 1 HETATM 20 C CAB HEM . . . B 2 -21.473 16.027 -11.038 1 30.32 ? CAB HEM 900 A 1 HETATM 21 C CBB HEM . . . B 2 -22.285 15.708 -9.847 1 31.06 ? CBB HEM 900 A 1 HETATM 22 C C1C HEM . . . B 2 -17.777 15.379 -13.461 1 27.29 ? C1C HEM 900 A 1 HETATM 23 C C2C HEM . . . B 2 -16.519 15.728 -12.958 1 26.08 ? C2C HEM 900 A 1 HETATM 24 C C3C HEM . . . B 2 -15.64 15.67 -14.052 1 25.94 ? C3C HEM 900 A 1 HETATM 25 C C4C HEM . . . B 2 -16.455 15.279 -15.167 1 26.89 ? C4C HEM 900 A 1 HETATM 26 C CMC HEM . . . B 2 -16.165 16.102 -11.489 1 22.14 ? CMC HEM 900 A 1 HETATM 27 C CAC HEM . . . B 2 -14.31 15.911 -14.145 1 26.09 ? CAC HEM 900 A 1 HETATM 28 C CBC HEM . . . B 2 -13.229 15.044 -13.907 1 28.37 ? CBC HEM 900 A 1 HETATM 29 C C1D HEM . . . B 2 -16.715 14.212 -17.419 1 28.8 ? C1D HEM 900 A 1 HETATM 30 C C2D HEM . . . B 2 -16.236 13.997 -18.727 1 27.46 ? C2D HEM 900 A 1 HETATM 31 C C3D HEM . . . B 2 -17.301 13.566 -19.472 1 25.88 ? C3D HEM 900 A 1 HETATM 32 C C4D HEM . . . B 2 -18.374 13.54 -18.592 1 26.98 ? C4D HEM 900 A 1 HETATM 33 C CMD HEM . . . B 2 -14.796 14.21 -19.237 1 26.83 ? CMD HEM 900 A 1 HETATM 34 C CAD HEM . . . B 2 -17.396 13.174 -20.951 1 26.3 ? CAD HEM 900 A 1 HETATM 35 C CBD HEM . . . B 2 -17.141 11.663 -21.133 1 27.33 ? CBD HEM 900 A 1 HETATM 36 C CGD HEM . . . B 2 -17.264 11.125 -22.546 1 29.23 ? CGD HEM 900 A 1 HETATM 37 O O1D HEM . . . B 2 -17.696 11.812 -23.431 1 28.77 ? O1D HEM 900 A 1 HETATM 38 O O2D HEM . . . B 2 -16.95 9.961 -22.77 1 32.98 ? O2D HEM 900 A 1 HETATM 39 N NA HEM . . . B 2 -20.869 13.599 -16.944 1 28.49 ? NA HEM 900 A 1 HETATM 40 N NB HEM . . . B 2 -20.621 14.788 -14.339 1 26.3 ? NB HEM 900 A 1 HETATM 41 N NC HEM . . . B 2 -17.729 15.113 -14.764 1 27.85 ? NC HEM 900 A 1 HETATM 42 N ND HEM . . . B 2 -17.989 13.923 -17.385 1 26.9 ? ND HEM 900 A 1 HETATM 43 FE FE HEM . . . B 2 -19.272 14.286 -15.837 1 28.24 ? FE HEM 900 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #