data_3PM1 # _model_server_result.job_id NNPg32SG2CdyTG1cIBBrZg _model_server_result.datetime_utc '2024-11-24 03:29:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pm1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":205}' # _entry.id 3PM1 # _exptl.entry_id 3PM1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.404 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ETHIDIUM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PM1 _cell.length_a 104.148 _cell.length_b 104.148 _cell.length_c 98.564 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PM1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H20 N3 1' _chem_comp.formula_weight 314.404 _chem_comp.id ET _chem_comp.mon_nstd_flag . _chem_comp.name ETHIDIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ET doub 83 n y C1 C13 ET sing 84 n y C1 H1 ET sing 85 n n C2 C3 ET sing 86 n y C2 H2 ET sing 87 n n C3 C4 ET doub 88 n y C3 N23 ET sing 89 n n C4 C14 ET sing 90 n y C4 H4 ET sing 91 n n N5 C6 ET doub 92 n y N5 C14 ET sing 93 n y N5 C21 ET sing 94 n n C6 C11 ET sing 95 n y C6 C15 ET sing 96 n y C7 C8 ET doub 97 n y C7 C11 ET sing 98 n y C7 H7 ET sing 99 n n C8 C9 ET sing 100 n y C8 N24 ET sing 101 n n C9 C10 ET doub 102 n y C9 H9 ET sing 103 n n C10 C12 ET sing 104 n y C10 H10 ET sing 105 n n C11 C12 ET doub 106 n y C12 C13 ET sing 107 n y C13 C14 ET doub 108 n y C15 C16 ET doub 109 n y C15 C20 ET sing 110 n y C16 C17 ET sing 111 n y C16 H16 ET sing 112 n n C17 C18 ET doub 113 n y C17 H17 ET sing 114 n n C18 C19 ET sing 115 n y C18 H18 ET sing 116 n n C19 C20 ET doub 117 n y C19 H19 ET sing 118 n n C20 H20 ET sing 119 n n C21 C22 ET sing 120 n n C21 H211 ET sing 121 n n C21 H212 ET sing 122 n n C22 H221 ET sing 123 n n C22 H222 ET sing 124 n n C22 H223 ET sing 125 n n N23 H231 ET sing 126 n n N23 H232 ET sing 127 n n N24 H241 ET sing 128 n n N24 H242 ET sing 129 n n # _atom_sites.entry_id 3PM1 _atom_sites.fract_transf_matrix[1][1] 0.009602 _atom_sites.fract_transf_matrix[1][2] 0.005544 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011087 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010146 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 B 1 500 500 SO4 SO4 . D 2 SO4 B 1 501 501 SO4 SO4 . E 2 SO4 B 1 502 502 SO4 SO4 . F 2 SO4 B 1 507 507 SO4 SO4 . G 3 ET A 1 205 205 ET ET . H 2 SO4 A 1 503 503 SO4 SO4 . I 2 SO4 A 1 504 504 SO4 SO4 . J 2 SO4 A 1 505 505 SO4 SO4 . K 4 HOH B 1 508 508 HOH HOH . K 4 HOH B 2 509 509 HOH HOH . K 4 HOH B 3 510 510 HOH HOH . K 4 HOH B 4 511 511 HOH HOH . K 4 HOH B 5 512 512 HOH HOH . K 4 HOH B 6 513 513 HOH HOH . K 4 HOH B 7 514 514 HOH HOH . K 4 HOH B 8 515 515 HOH HOH . L 4 HOH A 1 506 506 HOH HOH . L 4 HOH A 2 507 507 HOH HOH . L 4 HOH A 3 508 508 HOH HOH . L 4 HOH A 4 509 509 HOH HOH . L 4 HOH A 5 510 510 HOH HOH . L 4 HOH A 6 511 511 HOH HOH . L 4 HOH A 7 512 512 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ET . . . G 3 35.034 -7.582 11.223 1 79.8 ? C1 ET 205 A 1 HETATM 2 C C2 ET . . . G 3 35.641 -6.55 11.935 1 79.74 ? C2 ET 205 A 1 HETATM 3 C C3 ET . . . G 3 37.023 -6.412 11.924 1 79.87 ? C3 ET 205 A 1 HETATM 4 C C4 ET . . . G 3 37.798 -7.305 11.194 1 80.14 ? C4 ET 205 A 1 HETATM 5 N N5 ET . . . G 3 38.005 -9.233 9.739 1 79.73 ? N5 ET 205 A 1 HETATM 6 C C6 ET . . . G 3 37.399 -10.268 9.019 1 79.96 ? C6 ET 205 A 1 HETATM 7 C C7 ET . . . G 3 35.418 -11.464 8.31 1 79.79 ? C7 ET 205 A 1 HETATM 8 C C8 ET . . . G 3 34.043 -11.625 8.302 1 79.79 ? C8 ET 205 A 1 HETATM 9 C C9 ET . . . G 3 33.244 -10.743 9.023 1 79.99 ? C9 ET 205 A 1 HETATM 10 C C10 ET . . . G 3 33.827 -9.706 9.746 1 80.05 ? C10 ET 205 A 1 HETATM 11 C C11 ET . . . G 3 36.012 -10.423 9.03 1 79.86 ? C11 ET 205 A 1 HETATM 12 C C12 ET . . . G 3 35.215 -9.534 9.759 1 80.08 ? C12 ET 205 A 1 HETATM 13 C C13 ET . . . G 3 35.809 -8.487 10.486 1 79.92 ? C13 ET 205 A 1 HETATM 14 C C14 ET . . . G 3 37.201 -8.339 10.474 1 79.89 ? C14 ET 205 A 1 HETATM 15 C C15 ET . . . G 3 38.176 -11.169 8.31 1 80.16 ? C15 ET 205 A 1 HETATM 16 C C16 ET . . . G 3 38.368 -11.033 6.938 1 81.47 ? C16 ET 205 A 1 HETATM 17 C C17 ET . . . G 3 39.142 -11.976 6.264 1 81.52 ? C17 ET 205 A 1 HETATM 18 C C18 ET . . . G 3 39.711 -13.043 6.955 1 81.24 ? C18 ET 205 A 1 HETATM 19 C C19 ET . . . G 3 39.508 -13.175 8.326 1 81.06 ? C19 ET 205 A 1 HETATM 20 C C20 ET . . . G 3 38.735 -12.239 9.002 1 80.32 ? C20 ET 205 A 1 HETATM 21 C C21 ET . . . G 3 39.486 -9.088 9.731 1 79.9 ? C21 ET 205 A 1 HETATM 22 C C22 ET . . . G 3 39.951 -8.035 8.717 1 79.86 ? C22 ET 205 A 1 HETATM 23 N N23 ET . . . G 3 37.609 -5.429 12.601 1 80.05 ? N23 ET 205 A 1 HETATM 24 N N24 ET . . . G 3 33.504 -12.626 7.609 1 79.9 ? N24 ET 205 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 24 #