data_3PMD
#
_model_server_result.job_id            hdzoxr1Z1BgMsCnMGZ1dVQ 
_model_server_result.datetime_utc      '2025-01-10 15:19:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pmd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":151}' 
#
_entry.id    3PMD 
#
_exptl.entry_id    3PMD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              186.291 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'UNDECANOIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3PMD 
_cell.length_a            89.223 
_cell.length_b            89.223 
_cell.length_c            35.819 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PMD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 23.879333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H22 O2' 
_chem_comp.formula_weight    186.291 
_chem_comp.id                11A 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'UNDECANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CAD 11A sing 1 n n 
CAA HAA1 11A sing 2 n n 
CAA HAA2 11A sing 3 n n 
CAA HAA3 11A sing 4 n n 
CAD CAE 11A sing 5 n n 
CAD HAD1 11A sing 6 n n 
CAD HAD2 11A sing 7 n n 
CAE CAF 11A sing 8 n n 
CAE HAE1 11A sing 9 n n 
CAE HAE2 11A sing 10 n n 
CAF CAG 11A sing 11 n n 
CAF HAF1 11A sing 12 n n 
CAF HAF2 11A sing 13 n n 
CAG CAH 11A sing 14 n n 
CAG HAG1 11A sing 15 n n 
CAG HAG2 11A sing 16 n n 
CAH CAI 11A sing 17 n n 
CAH HAH1 11A sing 18 n n 
CAH HAH2 11A sing 19 n n 
CAI CAJ 11A sing 20 n n 
CAI HAI1 11A sing 21 n n 
CAI HAI2 11A sing 22 n n 
CAJ CAK 11A sing 23 n n 
CAJ HAJ1 11A sing 24 n n 
CAJ HAJ2 11A sing 25 n n 
CAK CAL 11A sing 26 n n 
CAK HAK1 11A sing 27 n n 
CAK HAK2 11A sing 28 n n 
CAL CAM 11A sing 29 n n 
CAL HAL1 11A sing 30 n n 
CAL HAL2 11A sing 31 n n 
CAM OAC 11A sing 32 n n 
CAM OAB 11A doub 33 n n 
OAC HAC 11A sing 34 n n 
#
_atom_sites.entry_id                     3PMD 
_atom_sites.fract_transf_matrix[1][1]    0.011208 
_atom_sites.fract_transf_matrix[1][2]    0.006471 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012942 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.027918 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 11A A 1 151 103 11A 11A . 
C 3 CL A 1 152 1 CL CL . 
D 4 HOH A 1 153 1 HOH HOH . 
D 4 HOH A 2 154 2 HOH HOH . 
D 4 HOH A 3 155 3 HOH HOH . 
D 4 HOH A 4 156 4 HOH HOH . 
D 4 HOH A 5 157 5 HOH HOH . 
D 4 HOH A 6 158 6 HOH HOH . 
D 4 HOH A 7 159 7 HOH HOH . 
D 4 HOH A 8 160 8 HOH HOH . 
D 4 HOH A 9 161 9 HOH HOH . 
D 4 HOH A 10 162 10 HOH HOH . 
D 4 HOH A 11 163 11 HOH HOH . 
D 4 HOH A 12 164 12 HOH HOH . 
D 4 HOH A 13 165 13 HOH HOH . 
D 4 HOH A 14 166 14 HOH HOH . 
D 4 HOH A 15 167 15 HOH HOH . 
D 4 HOH A 16 168 16 HOH HOH . 
D 4 HOH A 17 169 17 HOH HOH . 
D 4 HOH A 18 170 18 HOH HOH . 
D 4 HOH A 19 171 19 HOH HOH . 
D 4 HOH A 20 172 20 HOH HOH . 
D 4 HOH A 21 173 21 HOH HOH . 
D 4 HOH A 22 174 22 HOH HOH . 
D 4 HOH A 23 175 23 HOH HOH . 
D 4 HOH A 24 176 24 HOH HOH . 
D 4 HOH A 25 177 25 HOH HOH . 
D 4 HOH A 26 178 26 HOH HOH . 
D 4 HOH A 27 179 27 HOH HOH . 
D 4 HOH A 28 180 28 HOH HOH . 
D 4 HOH A 29 181 29 HOH HOH . 
D 4 HOH A 30 182 30 HOH HOH . 
D 4 HOH A 31 183 31 HOH HOH . 
D 4 HOH A 32 184 32 HOH HOH . 
D 4 HOH A 33 185 33 HOH HOH . 
D 4 HOH A 34 186 34 HOH HOH . 
D 4 HOH A 35 187 35 HOH HOH . 
D 4 HOH A 36 188 36 HOH HOH . 
D 4 HOH A 37 189 37 HOH HOH . 
D 4 HOH A 38 190 38 HOH HOH . 
D 4 HOH A 39 191 39 HOH HOH . 
D 4 HOH A 40 192 40 HOH HOH . 
D 4 HOH A 41 193 41 HOH HOH . 
D 4 HOH A 42 194 42 HOH HOH . 
D 4 HOH A 43 195 43 HOH HOH . 
D 4 HOH A 44 196 44 HOH HOH . 
D 4 HOH A 45 197 45 HOH HOH . 
D 4 HOH A 46 198 46 HOH HOH . 
D 4 HOH A 47 199 47 HOH HOH . 
D 4 HOH A 48 200 48 HOH HOH . 
D 4 HOH A 49 201 49 HOH HOH . 
D 4 HOH A 50 202 50 HOH HOH . 
D 4 HOH A 51 203 51 HOH HOH . 
D 4 HOH A 52 204 52 HOH HOH . 
D 4 HOH A 53 205 53 HOH HOH . 
D 4 HOH A 54 206 54 HOH HOH . 
D 4 HOH A 55 207 55 HOH HOH . 
D 4 HOH A 56 208 56 HOH HOH . 
D 4 HOH A 57 209 57 HOH HOH . 
D 4 HOH A 58 210 58 HOH HOH . 
D 4 HOH A 59 211 59 HOH HOH . 
D 4 HOH A 60 212 60 HOH HOH . 
D 4 HOH A 61 213 61 HOH HOH . 
D 4 HOH A 62 214 62 HOH HOH . 
D 4 HOH A 63 215 63 HOH HOH . 
D 4 HOH A 64 216 64 HOH HOH . 
D 4 HOH A 65 217 65 HOH HOH . 
D 4 HOH A 66 218 66 HOH HOH . 
D 4 HOH A 67 219 67 HOH HOH . 
D 4 HOH A 68 220 68 HOH HOH . 
D 4 HOH A 69 221 69 HOH HOH . 
D 4 HOH A 70 222 70 HOH HOH . 
D 4 HOH A 71 223 71 HOH HOH . 
D 4 HOH A 72 224 72 HOH HOH . 
D 4 HOH A 73 225 73 HOH HOH . 
D 4 HOH A 74 226 74 HOH HOH . 
D 4 HOH A 75 227 75 HOH HOH . 
D 4 HOH A 76 228 76 HOH HOH . 
D 4 HOH A 77 229 77 HOH HOH . 
D 4 HOH A 78 230 78 HOH HOH . 
D 4 HOH A 79 231 79 HOH HOH . 
D 4 HOH A 80 232 80 HOH HOH . 
D 4 HOH A 81 233 81 HOH HOH . 
D 4 HOH A 82 234 82 HOH HOH . 
D 4 HOH A 83 235 83 HOH HOH . 
D 4 HOH A 84 236 84 HOH HOH . 
D 4 HOH A 85 237 85 HOH HOH . 
D 4 HOH A 86 238 86 HOH HOH . 
D 4 HOH A 87 239 87 HOH HOH . 
D 4 HOH A 88 240 88 HOH HOH . 
D 4 HOH A 89 241 89 HOH HOH . 
D 4 HOH A 90 242 90 HOH HOH . 
D 4 HOH A 91 243 91 HOH HOH . 
D 4 HOH A 92 244 92 HOH HOH . 
D 4 HOH A 93 245 93 HOH HOH . 
D 4 HOH A 94 246 94 HOH HOH . 
D 4 HOH A 95 247 95 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA 11A . . . B 2 -7.899 38.166 18.648 1 46.56 ? CAA 11A 151 A 1 
HETATM 2 C CAD 11A . . . B 2 -7.265 36.961 18.017 1 44.74 ? CAD 11A 151 A 1 
HETATM 3 C CAE 11A . . . B 2 -7.642 36.867 16.545 1 46.81 ? CAE 11A 151 A 1 
HETATM 4 C CAF 11A . . . B 2 -8.015 35.436 16.196 1 44.47 ? CAF 11A 151 A 1 
HETATM 5 C CAG 11A . . . B 2 -6.831 34.497 16.385 1 35.96 ? CAG 11A 151 A 1 
HETATM 6 C CAH 11A . . . B 2 -7.167 33.119 15.851 1 30.38 ? CAH 11A 151 A 1 
HETATM 7 C CAI 11A . . . B 2 -6.491 32.015 16.642 1 34.99 ? CAI 11A 151 A 1 
HETATM 8 C CAJ 11A . . . B 2 -4.984 32.077 16.479 1 38.98 ? CAJ 11A 151 A 1 
HETATM 9 C CAK 11A . . . B 2 -4.385 30.682 16.347 1 37.82 ? CAK 11A 151 A 1 
HETATM 10 C CAL 11A . . . B 2 -3.722 30.266 17.641 1 32.33 ? CAL 11A 151 A 1 
HETATM 11 C CAM 11A . . . B 2 -2.873 29.045 17.402 1 26.43 ? CAM 11A 151 A 1 
HETATM 12 O OAC 11A . . . B 2 -1.775 29.166 16.846 1 34.62 ? OAC 11A 151 A 1 
HETATM 13 O OAB 11A . . . B 2 -3.316 27.947 17.772 1 30.29 ? OAB 11A 151 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           13 
#