data_3PMI # _model_server_result.job_id TSyqDYhvEAyxSPcVecUdhQ _model_server_result.datetime_utc '2024-11-23 03:28:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pmi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":10}' # _entry.id 3PMI # _exptl.entry_id 3PMI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PMI _cell.length_a 55.044 _cell.length_b 57.716 _cell.length_c 187.072 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 PISA tetrameric 4 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F 1 1 B,G 2 1 C,H 3 1 D,I 4 1 B,G 5 2 A,C,D,E,F,H,I 5 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_756 -x+2,y+1/2,-z+3/2 -1 0 0 0 1 0 0 0 -1 110.088 28.858 280.608 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 97 A CYS 502 1_555 C SG CYS 97 C CYS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 B SG CYS 97 B CYS 502 1_555 D SG CYS 97 D CYS 502 3_746 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? covale ? covale1 A C GLY 8 A GLY 413 1_555 A N MSE 9 A MSE 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 9 A MSE 414 1_555 A N LEU 10 A LEU 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C HIS 43 A HIS 448 1_555 A N MSE 44 A MSE 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale4 A C MSE 44 A MSE 449 1_555 A N ASN 45 A ASN 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C LYS 47 A LYS 452 1_555 A N MSE 48 A MSE 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 48 A MSE 453 1_555 A N LYS 49 A LYS 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 B C GLY 8 B GLY 413 1_555 B N MSE 9 B MSE 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 B C MSE 9 B MSE 414 1_555 B N LEU 10 B LEU 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 B C HIS 43 B HIS 448 1_555 B N MSE 44 B MSE 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale10 B C MSE 44 B MSE 449 1_555 B N ASN 45 B ASN 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale11 B C LYS 47 B LYS 452 1_555 B N MSE 48 B MSE 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale12 B C MSE 48 B MSE 453 1_555 B N LYS 49 B LYS 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 C C GLY 8 C GLY 413 1_555 C N MSE 9 C MSE 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 C C MSE 9 C MSE 414 1_555 C N LEU 10 C LEU 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 C C HIS 43 C HIS 448 1_555 C N MSE 44 C MSE 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale16 C C MSE 44 C MSE 449 1_555 C N ASN 45 C ASN 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale17 C C LYS 47 C LYS 452 1_555 C N MSE 48 C MSE 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale18 C C MSE 48 C MSE 453 1_555 C N LYS 49 C LYS 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale19 D C GLY 8 D GLY 413 1_555 D N MSE 9 D MSE 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale20 D C MSE 9 D MSE 414 1_555 D N LEU 10 D LEU 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 D C HIS 43 D HIS 448 1_555 D N MSE 44 D MSE 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale22 D C MSE 44 D MSE 449 1_555 D N ASN 45 D ASN 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale23 D C LYS 47 D LYS 452 1_555 D N MSE 48 D MSE 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale24 D C MSE 48 D MSE 453 1_555 D N LYS 49 D LYS 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 235 n n C1 C2 PEG sing 236 n n C1 H11 PEG sing 237 n n C1 H12 PEG sing 238 n n O1 HO1 PEG sing 239 n n C2 O2 PEG sing 240 n n C2 H21 PEG sing 241 n n C2 H22 PEG sing 242 n n O2 C3 PEG sing 243 n n C3 C4 PEG sing 244 n n C3 H31 PEG sing 245 n n C3 H32 PEG sing 246 n n C4 O4 PEG sing 247 n n C4 H41 PEG sing 248 n n C4 H42 PEG sing 249 n n O4 HO4 PEG sing 250 n n # _atom_sites.entry_id 3PMI _atom_sites.fract_transf_matrix[1][1] 0.018167 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017326 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 2 2 SO4 SO4 . F 3 PEG A 1 10 10 PEG PEG . G 2 SO4 B 1 1 1 SO4 SO4 . H 4 UNL C 1 20 20 UNL UNL . I 4 UNL D 1 21 21 UNL UNL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . F 3 39.954 9.67 146.983 1 98.96 ? C1 PEG 10 A 1 HETATM 2 O O1 PEG . . . F 3 38.588 9.348 146.668 1 86.3 ? O1 PEG 10 A 1 HETATM 3 C C2 PEG . . . F 3 40.82 9.689 145.713 1 106.58 ? C2 PEG 10 A 1 HETATM 4 O O2 PEG . . . F 3 40.591 10.839 144.873 1 108.71 ? O2 PEG 10 A 1 HETATM 5 C C3 PEG . . . F 3 40.938 12.111 145.458 1 97.91 ? C3 PEG 10 A 1 HETATM 6 C C4 PEG . . . F 3 42.38 12.52 145.142 1 93.49 ? C4 PEG 10 A 1 HETATM 7 O O4 PEG . . . F 3 43.12 12.714 146.357 1 84.25 ? O4 PEG 10 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #