data_3PMQ # _model_server_result.job_id RN521QjU0lf-M3bpOQ--tA _model_server_result.datetime_utc '2024-11-21 11:59:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pmq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":680}' # _entry.id 3PMQ # _exptl.entry_id 3PMQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PMQ _cell.length_a 256.64 _cell.length_b 256.64 _cell.length_c 256.64 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PMQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 428 A CYS 428 1_555 A SG CYS 437 A CYS 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? covale ? covale1 A SG CYS 194 A CYS 194 1_555 B CAB HEC . A HEC 670 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? covale ? covale2 A SG CYS 197 A CYS 197 1_555 B CAC HEC . A HEC 670 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? covale ? covale3 A SG CYS 214 A CYS 214 1_555 C CAB HEC . A HEC 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? covale ? covale4 A SG CYS 217 A CYS 217 1_555 C CAC HEC . A HEC 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? covale ? covale5 A SG CYS 249 A CYS 249 1_555 D CAB HEC . A HEC 672 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? covale ? covale6 A SG CYS 252 A CYS 252 1_555 D CAC HEC . A HEC 672 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? covale ? covale7 A SG CYS 274 A CYS 274 1_555 E CAB HEC . A HEC 673 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? covale ? covale8 A SG CYS 277 A CYS 277 1_555 E CAC HEC . A HEC 673 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? covale ? covale9 A SG CYS 298 A CYS 298 1_555 F CAB HEC . A HEC 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? covale ? covale10 A SG CYS 301 A CYS 301 1_555 F CAC HEC . A HEC 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? covale ? covale11 A SG CYS 473 A CYS 473 1_555 G CAB HEC . A HEC 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? covale ? covale12 A SG CYS 476 A CYS 476 1_555 G CAC HEC . A HEC 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? covale ? covale13 A SG CYS 495 A CYS 495 1_555 H CAB HEC . A HEC 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? covale ? covale14 A SG CYS 498 A CYS 498 1_555 H CAC HEC . A HEC 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? covale ? covale15 A SG CYS 546 A CYS 546 1_555 I CAB HEC . A HEC 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? covale ? covale16 A SG CYS 549 A CYS 549 1_555 I CAC HEC . A HEC 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? covale ? covale17 A SG CYS 586 A CYS 586 1_555 J CAB HEC . A HEC 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? covale ? covale18 A SG CYS 589 A CYS 589 1_555 J CAC HEC . A HEC 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? covale ? covale19 A SG CYS 620 A CYS 620 1_555 K CAB HEC . A HEC 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? covale ? covale20 A SG CYS 623 A CYS 623 1_555 K CAC HEC . A HEC 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc1 A NE2 HIS 198 A HIS 198 1_555 B FE HEC . A HEC 670 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc2 A NE2 HIS 204 A HIS 204 1_555 C FE HEC . A HEC 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc3 A NE2 HIS 218 A HIS 218 1_555 C FE HEC . A HEC 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc4 A NE2 HIS 235 A HIS 235 1_555 D FE HEC . A HEC 672 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc5 A NE2 HIS 238 A HIS 238 1_555 B FE HEC . A HEC 670 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc6 A NE2 HIS 253 A HIS 253 1_555 D FE HEC . A HEC 672 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc7 A O ASN 256 A ASN 256 1_555 L CA CA . A CA 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.051 ? metalc ? metalc8 A O LEU 259 A LEU 259 1_555 L CA CA . A CA 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? metalc ? metalc9 A O ARG 262 A ARG 262 1_555 L CA CA . A CA 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.185 ? metalc ? metalc10 A NE2 HIS 278 A HIS 278 1_555 E FE HEC . A HEC 673 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc11 A NE2 HIS 289 A HIS 289 1_555 F FE HEC . A HEC 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc12 A NE2 HIS 302 A HIS 302 1_555 F FE HEC . A HEC 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc13 A NE2 HIS 311 A HIS 311 1_555 E FE HEC . A HEC 673 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc14 A NE2 HIS 477 A HIS 477 1_555 G FE HEC . A HEC 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc15 A NE2 HIS 485 A HIS 485 1_555 H FE HEC . A HEC 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc16 A NE2 HIS 499 A HIS 499 1_555 H FE HEC . A HEC 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc17 A NE2 HIS 524 A HIS 524 1_555 I FE HEC . A HEC 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc18 A NE2 HIS 527 A HIS 527 1_555 G FE HEC . A HEC 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc19 A NE2 HIS 550 A HIS 550 1_555 I FE HEC . A HEC 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc20 A NE2 HIS 590 A HIS 590 1_555 J FE HEC . A HEC 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc21 A NE2 HIS 598 A HIS 598 1_555 K FE HEC . A HEC 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc22 A NE2 HIS 624 A HIS 624 1_555 K FE HEC . A HEC 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc23 A NE2 HIS 636 A HIS 636 1_555 J FE HEC . A HEC 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3PMQ _atom_sites.fract_transf_matrix[1][1] 0.003897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003897 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 670 1 HEC HEC . C 2 HEC A 1 671 2 HEC HEC . D 2 HEC A 1 672 3 HEC HEC . E 2 HEC A 1 673 4 HEC HEC . F 2 HEC A 1 674 5 HEC HEC . G 2 HEC A 1 675 6 HEC HEC . H 2 HEC A 1 676 7 HEC HEC . I 2 HEC A 1 677 8 HEC HEC . J 2 HEC A 1 678 9 HEC HEC . K 2 HEC A 1 679 10 HEC HEC . L 3 CA A 1 680 1 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 3 _atom_site.Cartn_x 52.159 _atom_site.Cartn_y 92.321 _atom_site.Cartn_z -75.04 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 101.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 680 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #