data_3PMW # _model_server_result.job_id -LToyMdJfuZIEEOYBcNxtg _model_server_result.datetime_utc '2024-11-25 10:21:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pmw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":312}' # _entry.id 3PMW # _exptl.entry_id 3PMW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.446 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-[(2S)-5-{[4-(hydroxymethyl)-3-(trifluoromethyl)-1H-pyrazol-1-yl]methyl}-2,3-dihydro-1H-inden-2-yl]propane-2-sulfonami de' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PMW _cell.length_a 64.787 _cell.length_b 87.328 _cell.length_c 47.549 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PMW _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 206 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 207 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 261 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 262 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.021 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C18 H22 F3 N3 O3 S' _chem_comp.formula_weight 417.446 _chem_comp.id G69 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-[(2S)-5-{[4-(hydroxymethyl)-3-(trifluoromethyl)-1H-pyrazol-1-yl]methyl}-2,3-dihydro-1H-inden-2-yl]propane-2-sulfonami de' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(S)-N-(5-((4-(hydroxymethyl)-3-(trifluoromethyl)-1H-pyrazol-1-yl)methyl)-2,3-dihydro-1H-inden-2-yl)propane-2-sulfonamid e' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 O1 G69 sing 92 n n O1 HO1 G69 sing 93 n n C6 C3 G69 sing 94 n n C3 H3 G69 sing 95 n n C3 H3A G69 sing 96 n n C7 C6 G69 doub 97 n y C6 C46 G69 sing 98 n y N9 C7 G69 sing 99 n y C7 H7 G69 sing 100 n n C10 N9 G69 sing 101 n n N9 N45 G69 sing 102 n y C10 C13 G69 sing 103 n n C10 H10 G69 sing 104 n n C10 H10A G69 sing 105 n n C43 C13 G69 doub 106 n y C13 C14 G69 sing 107 n y C14 C16 G69 doub 108 n y C14 H14 G69 sing 109 n n C40 C16 G69 sing 110 n y C16 C17 G69 sing 111 n n C17 C20 G69 sing 112 n n C17 H17 G69 sing 113 n n C17 H17A G69 sing 114 n n C37 C20 G69 sing 115 n n C20 N22 G69 sing 116 n n C20 H20 G69 sing 117 n n N22 S24 G69 sing 118 n n N22 HN22 G69 sing 119 n n O35 S24 G69 doub 120 n n S24 C25 G69 sing 121 n n S24 O36 G69 doub 122 n n C31 C25 G69 sing 123 n n C25 C27 G69 sing 124 n n C25 H25 G69 sing 125 n n C27 H27 G69 sing 126 n n C27 H27A G69 sing 127 n n C27 H27B G69 sing 128 n n C31 H31 G69 sing 129 n n C31 H31A G69 sing 130 n n C31 H31B G69 sing 131 n n C40 C37 G69 sing 132 n n C37 H37 G69 sing 133 n n C37 H37A G69 sing 134 n n C41 C40 G69 doub 135 n y C43 C41 G69 sing 136 n y C41 H41 G69 sing 137 n n C43 H43 G69 sing 138 n n N45 C46 G69 doub 139 n y C46 C47 G69 sing 140 n n F48 C47 G69 sing 141 n n C47 F49 G69 sing 142 n n C47 F50 G69 sing 143 n n # _atom_sites.entry_id 3PMW _atom_sites.fract_transf_matrix[1][1] 0.015435 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021031 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLU A 1 301 1 GLU GLU . C 3 SO4 A 1 302 1 SO4 SO4 . D 3 SO4 A 1 303 2 SO4 SO4 . E 3 SO4 A 1 304 3 SO4 SO4 . F 3 SO4 A 1 305 4 SO4 SO4 . G 3 SO4 A 1 306 5 SO4 SO4 . H 3 SO4 A 1 307 6 SO4 SO4 . I 3 SO4 A 1 308 7 SO4 SO4 . J 4 GOL A 1 309 1 GOL GOL . K 4 GOL A 1 310 2 GOL GOL . L 5 DMS A 1 311 1 DMS DMS . M 6 G69 A 1 312 1 G69 G69 . N 7 HOH A 1 401 1 HOH HOH . N 7 HOH A 2 402 2 HOH HOH . N 7 HOH A 3 403 3 HOH HOH . N 7 HOH A 4 404 4 HOH HOH . N 7 HOH A 5 405 5 HOH HOH . N 7 HOH A 6 406 6 HOH HOH . N 7 HOH A 7 407 7 HOH HOH . N 7 HOH A 8 408 8 HOH HOH . N 7 HOH A 9 409 9 HOH HOH . N 7 HOH A 10 410 10 HOH HOH . N 7 HOH A 11 411 11 HOH HOH . N 7 HOH A 12 412 12 HOH HOH . N 7 HOH A 13 413 13 HOH HOH . N 7 HOH A 14 414 14 HOH HOH . N 7 HOH A 15 415 15 HOH HOH . N 7 HOH A 16 416 16 HOH HOH . N 7 HOH A 17 417 17 HOH HOH . N 7 HOH A 18 418 18 HOH HOH . N 7 HOH A 19 419 19 HOH HOH . N 7 HOH A 20 420 20 HOH HOH . N 7 HOH A 21 421 21 HOH HOH . N 7 HOH A 22 422 22 HOH HOH . N 7 HOH A 23 423 23 HOH HOH . N 7 HOH A 24 424 24 HOH HOH . N 7 HOH A 25 425 25 HOH HOH . N 7 HOH A 26 426 26 HOH HOH . N 7 HOH A 27 427 27 HOH HOH . N 7 HOH A 28 428 28 HOH HOH . N 7 HOH A 29 429 29 HOH HOH . N 7 HOH A 30 430 30 HOH HOH . N 7 HOH A 31 431 31 HOH HOH . N 7 HOH A 32 432 32 HOH HOH . N 7 HOH A 33 433 33 HOH HOH . N 7 HOH A 34 434 34 HOH HOH . N 7 HOH A 35 435 35 HOH HOH . N 7 HOH A 36 436 36 HOH HOH . N 7 HOH A 37 437 37 HOH HOH . N 7 HOH A 38 438 38 HOH HOH . N 7 HOH A 39 439 39 HOH HOH . N 7 HOH A 40 440 40 HOH HOH . N 7 HOH A 41 441 41 HOH HOH . N 7 HOH A 42 442 42 HOH HOH . N 7 HOH A 43 443 43 HOH HOH . N 7 HOH A 44 444 44 HOH HOH . N 7 HOH A 45 445 45 HOH HOH . N 7 HOH A 46 446 46 HOH HOH . N 7 HOH A 47 447 47 HOH HOH . N 7 HOH A 48 448 48 HOH HOH . N 7 HOH A 49 449 50 HOH HOH . N 7 HOH A 50 450 51 HOH HOH . N 7 HOH A 51 451 52 HOH HOH . N 7 HOH A 52 452 53 HOH HOH . N 7 HOH A 53 453 54 HOH HOH . N 7 HOH A 54 454 55 HOH HOH . N 7 HOH A 55 455 56 HOH HOH . N 7 HOH A 56 456 57 HOH HOH . N 7 HOH A 57 457 58 HOH HOH . N 7 HOH A 58 458 60 HOH HOH . N 7 HOH A 59 459 61 HOH HOH . N 7 HOH A 60 460 62 HOH HOH . N 7 HOH A 61 461 63 HOH HOH . N 7 HOH A 62 462 64 HOH HOH . N 7 HOH A 63 463 65 HOH HOH . N 7 HOH A 64 464 66 HOH HOH . N 7 HOH A 65 465 67 HOH HOH . N 7 HOH A 66 466 68 HOH HOH . N 7 HOH A 67 467 69 HOH HOH . N 7 HOH A 68 468 70 HOH HOH . N 7 HOH A 69 469 71 HOH HOH . N 7 HOH A 70 470 72 HOH HOH . N 7 HOH A 71 471 73 HOH HOH . N 7 HOH A 72 472 74 HOH HOH . N 7 HOH A 73 473 75 HOH HOH . N 7 HOH A 74 474 76 HOH HOH . N 7 HOH A 75 475 77 HOH HOH . N 7 HOH A 76 476 78 HOH HOH . N 7 HOH A 77 477 79 HOH HOH . N 7 HOH A 78 478 80 HOH HOH . N 7 HOH A 79 479 81 HOH HOH . N 7 HOH A 80 480 82 HOH HOH . N 7 HOH A 81 481 83 HOH HOH . N 7 HOH A 82 482 84 HOH HOH . N 7 HOH A 83 483 85 HOH HOH . N 7 HOH A 84 484 88 HOH HOH . N 7 HOH A 85 485 90 HOH HOH . N 7 HOH A 86 486 92 HOH HOH . N 7 HOH A 87 487 93 HOH HOH . N 7 HOH A 88 488 94 HOH HOH . N 7 HOH A 89 489 96 HOH HOH . N 7 HOH A 90 490 97 HOH HOH . N 7 HOH A 91 491 98 HOH HOH . N 7 HOH A 92 492 99 HOH HOH . N 7 HOH A 93 493 100 HOH HOH . N 7 HOH A 94 494 101 HOH HOH . N 7 HOH A 95 495 102 HOH HOH . N 7 HOH A 96 496 103 HOH HOH . N 7 HOH A 97 497 104 HOH HOH . N 7 HOH A 98 498 106 HOH HOH . N 7 HOH A 99 499 107 HOH HOH . N 7 HOH A 100 500 108 HOH HOH . N 7 HOH A 101 501 111 HOH HOH . N 7 HOH A 102 502 112 HOH HOH . N 7 HOH A 103 503 113 HOH HOH . N 7 HOH A 104 504 114 HOH HOH . N 7 HOH A 105 505 115 HOH HOH . N 7 HOH A 106 506 116 HOH HOH . N 7 HOH A 107 507 117 HOH HOH . N 7 HOH A 108 508 118 HOH HOH . N 7 HOH A 109 509 120 HOH HOH . N 7 HOH A 110 510 121 HOH HOH . N 7 HOH A 111 511 122 HOH HOH . N 7 HOH A 112 512 123 HOH HOH . N 7 HOH A 113 513 124 HOH HOH . N 7 HOH A 114 514 125 HOH HOH . N 7 HOH A 115 515 127 HOH HOH . N 7 HOH A 116 516 129 HOH HOH . N 7 HOH A 117 517 130 HOH HOH . N 7 HOH A 118 518 131 HOH HOH . N 7 HOH A 119 519 132 HOH HOH . N 7 HOH A 120 520 133 HOH HOH . N 7 HOH A 121 521 136 HOH HOH . N 7 HOH A 122 522 137 HOH HOH . N 7 HOH A 123 523 138 HOH HOH . N 7 HOH A 124 524 139 HOH HOH . N 7 HOH A 125 525 140 HOH HOH . N 7 HOH A 126 526 141 HOH HOH . N 7 HOH A 127 527 142 HOH HOH . N 7 HOH A 128 528 143 HOH HOH . N 7 HOH A 129 529 144 HOH HOH . N 7 HOH A 130 530 145 HOH HOH . N 7 HOH A 131 531 146 HOH HOH . N 7 HOH A 132 532 147 HOH HOH . N 7 HOH A 133 533 148 HOH HOH . N 7 HOH A 134 534 149 HOH HOH . N 7 HOH A 135 535 150 HOH HOH . N 7 HOH A 136 536 152 HOH HOH . N 7 HOH A 137 537 153 HOH HOH . N 7 HOH A 138 538 154 HOH HOH . N 7 HOH A 139 539 155 HOH HOH . N 7 HOH A 140 540 156 HOH HOH . N 7 HOH A 141 541 157 HOH HOH . N 7 HOH A 142 542 158 HOH HOH . N 7 HOH A 143 543 159 HOH HOH . N 7 HOH A 144 544 160 HOH HOH . N 7 HOH A 145 545 161 HOH HOH . N 7 HOH A 146 546 164 HOH HOH . N 7 HOH A 147 547 165 HOH HOH . N 7 HOH A 148 548 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 G69 . . . M 6 1.918 -5.284 19.82 0.5 44.14 ? O1 G69 312 A 1 HETATM 2 C C3 G69 . . . M 6 2.419 -5.395 18.49 0.5 41.33 ? C3 G69 312 A 1 HETATM 3 C C6 G69 . . . M 6 2.308 -4.106 17.756 0.5 40.13 ? C6 G69 312 A 1 HETATM 4 C C7 G69 . . . M 6 1.635 -3.888 16.565 0.5 39.11 ? C7 G69 312 A 1 HETATM 5 N N9 G69 . . . M 6 1.785 -2.567 16.264 0.5 37.96 ? N9 G69 312 A 1 HETATM 6 C C10 G69 . . . M 6 1.245 -1.903 15.1 0.5 36.61 ? C10 G69 312 A 1 HETATM 7 C C13 G69 . . . M 6 0.679 -0.527 15.32 0.5 35.88 ? C13 G69 312 A 1 HETATM 8 C C14 G69 . . . M 6 -0.706 -0.365 15.523 0.5 36.17 ? C14 G69 312 A 1 HETATM 9 C C16 G69 . . . M 6 -1.198 0.917 15.689 0.5 35.06 ? C16 G69 312 A 1 HETATM 10 C C17 G69 . . . M 6 -2.599 1.348 15.924 0.5 35.95 ? C17 G69 312 A 1 HETATM 11 C C20 G69 . . . M 6 -2.394 2.698 16.614 0.5 37.06 ? C20 G69 312 A 1 HETATM 12 N N22 G69 . . . M 6 -2.106 2.569 18.06 0.5 37.68 ? N22 G69 312 A 1 HETATM 13 S S24 G69 . . . M 6 -3.305 2.856 19.194 0.5 39.01 ? S24 G69 312 A 1 HETATM 14 C C25 G69 . . . M 6 -3.165 4.64 19.515 0.5 39.92 ? C25 G69 312 A 1 HETATM 15 C C27 G69 . . . M 6 -2.365 4.924 20.788 0.5 38.84 ? C27 G69 312 A 1 HETATM 16 C C31 G69 . . . M 6 -2.551 5.408 18.345 0.5 41.08 ? C31 G69 312 A 1 HETATM 17 O O35 G69 . . . M 6 -4.568 2.694 18.502 0.5 41.63 ? O35 G69 312 A 1 HETATM 18 O O36 G69 . . . M 6 -3.012 2.045 20.342 0.5 37.41 ? O36 G69 312 A 1 HETATM 19 C C37 G69 . . . M 6 -1.185 3.28 15.863 0.5 35.77 ? C37 G69 312 A 1 HETATM 20 C C40 G69 . . . M 6 -0.373 2.038 15.648 0.5 35.57 ? C40 G69 312 A 1 HETATM 21 C C41 G69 . . . M 6 0.986 1.899 15.438 0.5 35.3 ? C41 G69 312 A 1 HETATM 22 C C43 G69 . . . M 6 1.518 0.613 15.269 0.5 35.51 ? C43 G69 312 A 1 HETATM 23 N N45 G69 . . . M 6 2.522 -1.894 17.163 0.5 37.84 ? N45 G69 312 A 1 HETATM 24 C C46 G69 . . . M 6 2.853 -2.815 18.093 0.5 38.41 ? C46 G69 312 A 1 HETATM 25 C C47 G69 . . . M 6 3.688 -2.405 19.283 0.5 37.44 ? C47 G69 312 A 1 HETATM 26 F F48 G69 . . . M 6 4.406 -1.278 19.016 0.5 36.19 ? F48 G69 312 A 1 HETATM 27 F F49 G69 . . . M 6 4.552 -3.36 19.753 0.5 38.41 ? F49 G69 312 A 1 HETATM 28 F F50 G69 . . . M 6 2.903 -2.013 20.311 0.5 34.9 ? F50 G69 312 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 28 #