data_3PN1 # _model_server_result.job_id HaTdKg4EdXZl-lVpgXTuYg _model_server_result.datetime_utc '2024-11-26 08:59:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pn1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":319}' # _entry.id 3PN1 # _exptl.entry_id 3PN1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 355.413 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(butylsulfanyl)adenosine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PN1 _cell.length_a 137.806 _cell.length_b 137.806 _cell.length_c 56.023 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PN1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H21 N5 O4 S' _chem_comp.formula_weight 355.413 _chem_comp.id IVH _chem_comp.mon_nstd_flag . _chem_comp.name 2-(butylsulfanyl)adenosine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S C4 IVH sing 173 n n S C5 IVH sing 174 n n C1 C2 IVH sing 175 n n C1 H1 IVH sing 176 n n C1 H1A IVH sing 177 n n C1 H1B IVH sing 178 n n N1 C5 IVH doub 179 n y N1 C6 IVH sing 180 n y C10 O1 IVH sing 181 n n C13 O1 IVH sing 182 n n C2 C3 IVH sing 183 n n C2 H2 IVH sing 184 n n C2 H2A IVH sing 185 n n C5 N2 IVH sing 186 n y N2 C8 IVH doub 187 n y C14 O2 IVH sing 188 n n O2 HO2 IVH sing 189 n n C3 C4 IVH sing 190 n n C3 H3 IVH sing 191 n n C3 H3A IVH sing 192 n n C8 N3 IVH sing 193 n y N3 C9 IVH sing 194 n y N3 C10 IVH sing 195 n n C12 O3 IVH sing 196 n n O3 HO3 IVH sing 197 n n C4 H4 IVH sing 198 n n C4 H4A IVH sing 199 n n C7 N4 IVH sing 200 n y N4 C9 IVH doub 201 n y C11 O4 IVH sing 202 n n O4 HO4 IVH sing 203 n n N5 C6 IVH sing 204 n n N5 HN5 IVH sing 205 n n N5 HN5A IVH sing 206 n n C6 C7 IVH doub 207 n y C7 C8 IVH sing 208 n y C9 H9 IVH sing 209 n n C11 C10 IVH sing 210 n n C10 H10 IVH sing 211 n n C12 C11 IVH sing 212 n n C11 H11 IVH sing 213 n n C12 C13 IVH sing 214 n n C12 H12 IVH sing 215 n n C14 C13 IVH sing 216 n n C13 H13 IVH sing 217 n n C14 H14 IVH sing 218 n n C14 H14A IVH sing 219 n n # _atom_sites.entry_id 3PN1 _atom_sites.fract_transf_matrix[1][1] 0.007257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01785 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IVH A 1 319 1 IVH IVH . C 3 IWH A 1 320 1 IWH IWH . D 4 HOH A 1 321 1 HOH HOH . D 4 HOH A 2 322 2 HOH HOH . D 4 HOH A 3 323 3 HOH HOH . D 4 HOH A 4 324 4 HOH HOH . D 4 HOH A 5 325 5 HOH HOH . D 4 HOH A 6 326 6 HOH HOH . D 4 HOH A 7 327 7 HOH HOH . D 4 HOH A 8 328 8 HOH HOH . D 4 HOH A 9 329 9 HOH HOH . D 4 HOH A 10 330 10 HOH HOH . D 4 HOH A 11 331 11 HOH HOH . D 4 HOH A 12 332 12 HOH HOH . D 4 HOH A 13 333 14 HOH HOH . D 4 HOH A 14 334 15 HOH HOH . D 4 HOH A 15 335 16 HOH HOH . D 4 HOH A 16 336 17 HOH HOH . D 4 HOH A 17 337 18 HOH HOH . D 4 HOH A 18 338 19 HOH HOH . D 4 HOH A 19 339 20 HOH HOH . D 4 HOH A 20 340 21 HOH HOH . D 4 HOH A 21 341 22 HOH HOH . D 4 HOH A 22 342 23 HOH HOH . D 4 HOH A 23 343 24 HOH HOH . D 4 HOH A 24 344 25 HOH HOH . D 4 HOH A 25 345 26 HOH HOH . D 4 HOH A 26 346 27 HOH HOH . D 4 HOH A 27 347 28 HOH HOH . D 4 HOH A 28 348 29 HOH HOH . D 4 HOH A 29 349 30 HOH HOH . D 4 HOH A 30 350 31 HOH HOH . D 4 HOH A 31 351 32 HOH HOH . D 4 HOH A 32 352 33 HOH HOH . D 4 HOH A 33 353 34 HOH HOH . D 4 HOH A 34 354 35 HOH HOH . D 4 HOH A 35 355 36 HOH HOH . D 4 HOH A 36 356 37 HOH HOH . D 4 HOH A 37 357 38 HOH HOH . D 4 HOH A 38 358 39 HOH HOH . D 4 HOH A 39 359 40 HOH HOH . D 4 HOH A 40 360 41 HOH HOH . D 4 HOH A 41 361 42 HOH HOH . D 4 HOH A 42 362 43 HOH HOH . D 4 HOH A 43 363 44 HOH HOH . D 4 HOH A 44 364 45 HOH HOH . D 4 HOH A 45 365 46 HOH HOH . D 4 HOH A 46 366 47 HOH HOH . D 4 HOH A 47 367 48 HOH HOH . D 4 HOH A 48 368 49 HOH HOH . D 4 HOH A 49 369 50 HOH HOH . D 4 HOH A 50 370 51 HOH HOH . D 4 HOH A 51 371 52 HOH HOH . D 4 HOH A 52 372 53 HOH HOH . D 4 HOH A 53 373 54 HOH HOH . D 4 HOH A 54 374 55 HOH HOH . D 4 HOH A 55 375 56 HOH HOH . D 4 HOH A 56 376 57 HOH HOH . D 4 HOH A 57 377 58 HOH HOH . D 4 HOH A 58 378 59 HOH HOH . D 4 HOH A 59 379 60 HOH HOH . D 4 HOH A 60 380 61 HOH HOH . D 4 HOH A 61 381 62 HOH HOH . D 4 HOH A 62 382 63 HOH HOH . D 4 HOH A 63 383 64 HOH HOH . D 4 HOH A 64 384 65 HOH HOH . D 4 HOH A 65 385 66 HOH HOH . D 4 HOH A 66 386 67 HOH HOH . D 4 HOH A 67 387 68 HOH HOH . D 4 HOH A 68 388 69 HOH HOH . D 4 HOH A 69 389 70 HOH HOH . D 4 HOH A 70 390 71 HOH HOH . D 4 HOH A 71 391 72 HOH HOH . D 4 HOH A 72 392 73 HOH HOH . D 4 HOH A 73 393 74 HOH HOH . D 4 HOH A 74 394 75 HOH HOH . D 4 HOH A 75 395 76 HOH HOH . D 4 HOH A 76 396 77 HOH HOH . D 4 HOH A 77 397 78 HOH HOH . D 4 HOH A 78 398 79 HOH HOH . D 4 HOH A 79 399 80 HOH HOH . D 4 HOH A 80 400 81 HOH HOH . D 4 HOH A 81 401 82 HOH HOH . D 4 HOH A 82 402 83 HOH HOH . D 4 HOH A 83 403 84 HOH HOH . D 4 HOH A 84 404 85 HOH HOH . D 4 HOH A 85 405 86 HOH HOH . D 4 HOH A 86 406 87 HOH HOH . D 4 HOH A 87 407 88 HOH HOH . D 4 HOH A 88 408 89 HOH HOH . D 4 HOH A 89 409 90 HOH HOH . D 4 HOH A 90 410 91 HOH HOH . D 4 HOH A 91 411 92 HOH HOH . D 4 HOH A 92 412 93 HOH HOH . D 4 HOH A 93 413 94 HOH HOH . D 4 HOH A 94 414 95 HOH HOH . D 4 HOH A 95 415 96 HOH HOH . D 4 HOH A 96 416 97 HOH HOH . D 4 HOH A 97 417 98 HOH HOH . D 4 HOH A 98 418 99 HOH HOH . D 4 HOH A 99 419 100 HOH HOH . D 4 HOH A 100 420 101 HOH HOH . D 4 HOH A 101 421 102 HOH HOH . D 4 HOH A 102 422 103 HOH HOH . D 4 HOH A 103 423 104 HOH HOH . D 4 HOH A 104 424 105 HOH HOH . D 4 HOH A 105 425 106 HOH HOH . D 4 HOH A 106 426 107 HOH HOH . D 4 HOH A 107 427 108 HOH HOH . D 4 HOH A 108 428 109 HOH HOH . D 4 HOH A 109 429 110 HOH HOH . D 4 HOH A 110 430 111 HOH HOH . D 4 HOH A 111 431 112 HOH HOH . D 4 HOH A 112 432 113 HOH HOH . D 4 HOH A 113 433 114 HOH HOH . D 4 HOH A 114 434 115 HOH HOH . D 4 HOH A 115 435 116 HOH HOH . D 4 HOH A 116 436 117 HOH HOH . D 4 HOH A 117 437 118 HOH HOH . D 4 HOH A 118 438 119 HOH HOH . D 4 HOH A 119 439 120 HOH HOH . D 4 HOH A 120 440 121 HOH HOH . D 4 HOH A 121 441 122 HOH HOH . D 4 HOH A 122 442 123 HOH HOH . D 4 HOH A 123 443 124 HOH HOH . D 4 HOH A 124 444 125 HOH HOH . D 4 HOH A 125 445 126 HOH HOH . D 4 HOH A 126 446 127 HOH HOH . D 4 HOH A 127 447 128 HOH HOH . D 4 HOH A 128 448 129 HOH HOH . D 4 HOH A 129 449 130 HOH HOH . D 4 HOH A 130 450 131 HOH HOH . D 4 HOH A 131 451 132 HOH HOH . D 4 HOH A 132 452 133 HOH HOH . D 4 HOH A 133 453 134 HOH HOH . D 4 HOH A 134 454 135 HOH HOH . D 4 HOH A 135 455 136 HOH HOH . D 4 HOH A 136 456 137 HOH HOH . D 4 HOH A 137 457 138 HOH HOH . D 4 HOH A 138 458 139 HOH HOH . D 4 HOH A 139 459 140 HOH HOH . D 4 HOH A 140 460 141 HOH HOH . D 4 HOH A 141 461 142 HOH HOH . D 4 HOH A 142 462 143 HOH HOH . D 4 HOH A 143 463 144 HOH HOH . D 4 HOH A 144 464 145 HOH HOH . D 4 HOH A 145 465 146 HOH HOH . D 4 HOH A 146 466 147 HOH HOH . D 4 HOH A 147 467 148 HOH HOH . D 4 HOH A 148 468 149 HOH HOH . D 4 HOH A 149 469 150 HOH HOH . D 4 HOH A 150 470 151 HOH HOH . D 4 HOH A 151 471 152 HOH HOH . D 4 HOH A 152 472 153 HOH HOH . D 4 HOH A 153 473 154 HOH HOH . D 4 HOH A 154 474 155 HOH HOH . D 4 HOH A 155 475 156 HOH HOH . D 4 HOH A 156 476 157 HOH HOH . D 4 HOH A 157 477 158 HOH HOH . D 4 HOH A 158 478 159 HOH HOH . D 4 HOH A 159 479 160 HOH HOH . D 4 HOH A 160 480 161 HOH HOH . D 4 HOH A 161 481 162 HOH HOH . D 4 HOH A 162 482 163 HOH HOH . D 4 HOH A 163 483 164 HOH HOH . D 4 HOH A 164 484 165 HOH HOH . D 4 HOH A 165 485 167 HOH HOH . D 4 HOH A 166 486 168 HOH HOH . D 4 HOH A 167 487 169 HOH HOH . D 4 HOH A 168 488 170 HOH HOH . D 4 HOH A 169 489 171 HOH HOH . D 4 HOH A 170 490 172 HOH HOH . D 4 HOH A 171 491 173 HOH HOH . D 4 HOH A 172 492 174 HOH HOH . D 4 HOH A 173 493 175 HOH HOH . D 4 HOH A 174 494 176 HOH HOH . D 4 HOH A 175 495 177 HOH HOH . D 4 HOH A 176 496 178 HOH HOH . D 4 HOH A 177 497 179 HOH HOH . D 4 HOH A 178 498 180 HOH HOH . D 4 HOH A 179 499 181 HOH HOH . D 4 HOH A 180 500 182 HOH HOH . D 4 HOH A 181 501 183 HOH HOH . D 4 HOH A 182 502 185 HOH HOH . D 4 HOH A 183 503 186 HOH HOH . D 4 HOH A 184 504 187 HOH HOH . D 4 HOH A 185 505 188 HOH HOH . D 4 HOH A 186 506 189 HOH HOH . D 4 HOH A 187 507 190 HOH HOH . D 4 HOH A 188 508 191 HOH HOH . D 4 HOH A 189 509 192 HOH HOH . D 4 HOH A 190 510 193 HOH HOH . D 4 HOH A 191 511 194 HOH HOH . D 4 HOH A 192 512 195 HOH HOH . D 4 HOH A 193 513 196 HOH HOH . D 4 HOH A 194 514 197 HOH HOH . D 4 HOH A 195 515 198 HOH HOH . D 4 HOH A 196 516 199 HOH HOH . D 4 HOH A 197 517 200 HOH HOH . D 4 HOH A 198 518 201 HOH HOH . D 4 HOH A 199 519 202 HOH HOH . D 4 HOH A 200 520 203 HOH HOH . D 4 HOH A 201 521 204 HOH HOH . D 4 HOH A 202 522 205 HOH HOH . D 4 HOH A 203 523 206 HOH HOH . D 4 HOH A 204 524 207 HOH HOH . D 4 HOH A 205 525 208 HOH HOH . D 4 HOH A 206 526 209 HOH HOH . D 4 HOH A 207 527 210 HOH HOH . D 4 HOH A 208 528 211 HOH HOH . D 4 HOH A 209 529 212 HOH HOH . D 4 HOH A 210 530 213 HOH HOH . D 4 HOH A 211 531 214 HOH HOH . D 4 HOH A 212 532 215 HOH HOH . D 4 HOH A 213 533 216 HOH HOH . D 4 HOH A 214 534 217 HOH HOH . D 4 HOH A 215 535 218 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S IVH . . . B 2 110.699 91.281 24.473 1 27.05 ? S IVH 319 A 1 HETATM 2 C C1 IVH . . . B 2 108.923 94.993 23.184 1 43.66 ? C1 IVH 319 A 1 HETATM 3 N N1 IVH . . . B 2 111.387 89.06 25.502 1 19.29 ? N1 IVH 319 A 1 HETATM 4 O O1 IVH . . . B 2 111.412 92.106 30.148 1 30.25 ? O1 IVH 319 A 1 HETATM 5 C C2 IVH . . . B 2 109.229 93.713 23.954 1 41.66 ? C2 IVH 319 A 1 HETATM 6 N N2 IVH . . . B 2 111.653 90.94 26.882 1 19.89 ? N2 IVH 319 A 1 HETATM 7 O O2 IVH . . . B 2 109.361 93.62 31.042 1 35.85 ? O2 IVH 319 A 1 HETATM 8 C C3 IVH . . . B 2 110.377 93.97 24.924 1 36.44 ? C3 IVH 319 A 1 HETATM 9 N N3 IVH . . . B 2 112.592 90.36 29.085 1 25.91 ? N3 IVH 319 A 1 HETATM 10 O O3 IVH . . . B 2 112.99 95.111 29.131 1 31.88 ? O3 IVH 319 A 1 HETATM 11 C C4 IVH . . . B 2 111.397 92.848 24.941 1 36.45 ? C4 IVH 319 A 1 HETATM 12 N N4 IVH . . . B 2 112.692 88.179 28.715 1 23.9 ? N4 IVH 319 A 1 HETATM 13 O O4 IVH . . . B 2 114.447 93.124 30.01 1 25.69 ? O4 IVH 319 A 1 HETATM 14 C C5 IVH . . . B 2 111.284 90.378 25.746 1 22.73 ? C5 IVH 319 A 1 HETATM 15 N N5 IVH . . . B 2 111.864 86.895 26.087 1 17.96 ? N5 IVH 319 A 1 HETATM 16 C C6 IVH . . . B 2 111.831 88.236 26.407 1 18.59 ? C6 IVH 319 A 1 HETATM 17 C C7 IVH . . . B 2 112.218 88.769 27.608 1 24.23 ? C7 IVH 319 A 1 HETATM 18 C C8 IVH . . . B 2 112.123 90.154 27.849 1 22.88 ? C8 IVH 319 A 1 HETATM 19 C C9 IVH . . . B 2 112.928 89.155 29.589 1 25.41 ? C9 IVH 319 A 1 HETATM 20 C C10 IVH . . . B 2 112.731 91.605 29.885 1 25.93 ? C10 IVH 319 A 1 HETATM 21 C C11 IVH . . . B 2 113.432 92.697 29.134 1 26.69 ? C11 IVH 319 A 1 HETATM 22 C C12 IVH . . . B 2 112.405 93.838 29.003 1 32.47 ? C12 IVH 319 A 1 HETATM 23 C C13 IVH . . . B 2 111.464 93.562 30.115 1 30.76 ? C13 IVH 319 A 1 HETATM 24 C C14 IVH . . . B 2 110.053 94.025 29.834 1 34.97 ? C14 IVH 319 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #