data_3PN1 # _model_server_result.job_id PGZLXtTpbxNEIqUPBy12Rg _model_server_result.datetime_utc '2024-11-26 08:44:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pn1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":320}' # _entry.id 3PN1 # _exptl.entry_id 3PN1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.3 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(2,4-dimethylbenzyl)-6-oxo-1,6-dihydropyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PN1 _cell.length_a 137.806 _cell.length_b 137.806 _cell.length_c 56.023 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PN1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H16 N2 O2' _chem_comp.formula_weight 256.3 _chem_comp.id IWH _chem_comp.mon_nstd_flag . _chem_comp.name 1-(2,4-dimethylbenzyl)-6-oxo-1,6-dihydropyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 IWH sing 220 n n C1 H1 IWH sing 221 n n C1 H1A IWH sing 222 n n C1 H1B IWH sing 223 n n C10 N1 IWH sing 224 n n C14 N1 IWH sing 225 n n N1 C9 IWH sing 226 n n C14 O1 IWH doub 227 n n C3 C2 IWH doub 228 n y C2 C7 IWH sing 229 n y N2 C15 IWH sing 230 n n N2 HN2 IWH sing 231 n n N2 HN2A IWH sing 232 n n C15 O2 IWH doub 233 n n C4 C3 IWH sing 234 n y C3 H3 IWH sing 235 n n C4 C5 IWH doub 236 n y C4 H4 IWH sing 237 n n C9 C5 IWH sing 238 n n C5 C6 IWH sing 239 n y C6 C7 IWH doub 240 n y C6 C8 IWH sing 241 n n C7 H7 IWH sing 242 n n C8 H8 IWH sing 243 n n C8 H8A IWH sing 244 n n C8 H8B IWH sing 245 n n C9 H9 IWH sing 246 n n C9 H9A IWH sing 247 n n C11 C10 IWH doub 248 n n C10 H10 IWH sing 249 n n C15 C11 IWH sing 250 n n C12 C11 IWH sing 251 n n C12 C13 IWH doub 252 n n C12 H12 IWH sing 253 n n C13 C14 IWH sing 254 n n C13 H13 IWH sing 255 n n # _atom_sites.entry_id 3PN1 _atom_sites.fract_transf_matrix[1][1] 0.007257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01785 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IVH A 1 319 1 IVH IVH . C 3 IWH A 1 320 1 IWH IWH . D 4 HOH A 1 321 1 HOH HOH . D 4 HOH A 2 322 2 HOH HOH . D 4 HOH A 3 323 3 HOH HOH . D 4 HOH A 4 324 4 HOH HOH . D 4 HOH A 5 325 5 HOH HOH . D 4 HOH A 6 326 6 HOH HOH . D 4 HOH A 7 327 7 HOH HOH . D 4 HOH A 8 328 8 HOH HOH . D 4 HOH A 9 329 9 HOH HOH . D 4 HOH A 10 330 10 HOH HOH . D 4 HOH A 11 331 11 HOH HOH . D 4 HOH A 12 332 12 HOH HOH . D 4 HOH A 13 333 14 HOH HOH . D 4 HOH A 14 334 15 HOH HOH . D 4 HOH A 15 335 16 HOH HOH . D 4 HOH A 16 336 17 HOH HOH . D 4 HOH A 17 337 18 HOH HOH . D 4 HOH A 18 338 19 HOH HOH . D 4 HOH A 19 339 20 HOH HOH . D 4 HOH A 20 340 21 HOH HOH . D 4 HOH A 21 341 22 HOH HOH . D 4 HOH A 22 342 23 HOH HOH . D 4 HOH A 23 343 24 HOH HOH . D 4 HOH A 24 344 25 HOH HOH . D 4 HOH A 25 345 26 HOH HOH . D 4 HOH A 26 346 27 HOH HOH . D 4 HOH A 27 347 28 HOH HOH . D 4 HOH A 28 348 29 HOH HOH . D 4 HOH A 29 349 30 HOH HOH . D 4 HOH A 30 350 31 HOH HOH . D 4 HOH A 31 351 32 HOH HOH . D 4 HOH A 32 352 33 HOH HOH . D 4 HOH A 33 353 34 HOH HOH . D 4 HOH A 34 354 35 HOH HOH . D 4 HOH A 35 355 36 HOH HOH . D 4 HOH A 36 356 37 HOH HOH . D 4 HOH A 37 357 38 HOH HOH . D 4 HOH A 38 358 39 HOH HOH . D 4 HOH A 39 359 40 HOH HOH . D 4 HOH A 40 360 41 HOH HOH . D 4 HOH A 41 361 42 HOH HOH . D 4 HOH A 42 362 43 HOH HOH . D 4 HOH A 43 363 44 HOH HOH . D 4 HOH A 44 364 45 HOH HOH . D 4 HOH A 45 365 46 HOH HOH . D 4 HOH A 46 366 47 HOH HOH . D 4 HOH A 47 367 48 HOH HOH . D 4 HOH A 48 368 49 HOH HOH . D 4 HOH A 49 369 50 HOH HOH . D 4 HOH A 50 370 51 HOH HOH . D 4 HOH A 51 371 52 HOH HOH . D 4 HOH A 52 372 53 HOH HOH . D 4 HOH A 53 373 54 HOH HOH . D 4 HOH A 54 374 55 HOH HOH . D 4 HOH A 55 375 56 HOH HOH . D 4 HOH A 56 376 57 HOH HOH . D 4 HOH A 57 377 58 HOH HOH . D 4 HOH A 58 378 59 HOH HOH . D 4 HOH A 59 379 60 HOH HOH . D 4 HOH A 60 380 61 HOH HOH . D 4 HOH A 61 381 62 HOH HOH . D 4 HOH A 62 382 63 HOH HOH . D 4 HOH A 63 383 64 HOH HOH . D 4 HOH A 64 384 65 HOH HOH . D 4 HOH A 65 385 66 HOH HOH . D 4 HOH A 66 386 67 HOH HOH . D 4 HOH A 67 387 68 HOH HOH . D 4 HOH A 68 388 69 HOH HOH . D 4 HOH A 69 389 70 HOH HOH . D 4 HOH A 70 390 71 HOH HOH . D 4 HOH A 71 391 72 HOH HOH . D 4 HOH A 72 392 73 HOH HOH . D 4 HOH A 73 393 74 HOH HOH . D 4 HOH A 74 394 75 HOH HOH . D 4 HOH A 75 395 76 HOH HOH . D 4 HOH A 76 396 77 HOH HOH . D 4 HOH A 77 397 78 HOH HOH . D 4 HOH A 78 398 79 HOH HOH . D 4 HOH A 79 399 80 HOH HOH . D 4 HOH A 80 400 81 HOH HOH . D 4 HOH A 81 401 82 HOH HOH . D 4 HOH A 82 402 83 HOH HOH . D 4 HOH A 83 403 84 HOH HOH . D 4 HOH A 84 404 85 HOH HOH . D 4 HOH A 85 405 86 HOH HOH . D 4 HOH A 86 406 87 HOH HOH . D 4 HOH A 87 407 88 HOH HOH . D 4 HOH A 88 408 89 HOH HOH . D 4 HOH A 89 409 90 HOH HOH . D 4 HOH A 90 410 91 HOH HOH . D 4 HOH A 91 411 92 HOH HOH . D 4 HOH A 92 412 93 HOH HOH . D 4 HOH A 93 413 94 HOH HOH . D 4 HOH A 94 414 95 HOH HOH . D 4 HOH A 95 415 96 HOH HOH . D 4 HOH A 96 416 97 HOH HOH . D 4 HOH A 97 417 98 HOH HOH . D 4 HOH A 98 418 99 HOH HOH . D 4 HOH A 99 419 100 HOH HOH . D 4 HOH A 100 420 101 HOH HOH . D 4 HOH A 101 421 102 HOH HOH . D 4 HOH A 102 422 103 HOH HOH . D 4 HOH A 103 423 104 HOH HOH . D 4 HOH A 104 424 105 HOH HOH . D 4 HOH A 105 425 106 HOH HOH . D 4 HOH A 106 426 107 HOH HOH . D 4 HOH A 107 427 108 HOH HOH . D 4 HOH A 108 428 109 HOH HOH . D 4 HOH A 109 429 110 HOH HOH . D 4 HOH A 110 430 111 HOH HOH . D 4 HOH A 111 431 112 HOH HOH . D 4 HOH A 112 432 113 HOH HOH . D 4 HOH A 113 433 114 HOH HOH . D 4 HOH A 114 434 115 HOH HOH . D 4 HOH A 115 435 116 HOH HOH . D 4 HOH A 116 436 117 HOH HOH . D 4 HOH A 117 437 118 HOH HOH . D 4 HOH A 118 438 119 HOH HOH . D 4 HOH A 119 439 120 HOH HOH . D 4 HOH A 120 440 121 HOH HOH . D 4 HOH A 121 441 122 HOH HOH . D 4 HOH A 122 442 123 HOH HOH . D 4 HOH A 123 443 124 HOH HOH . D 4 HOH A 124 444 125 HOH HOH . D 4 HOH A 125 445 126 HOH HOH . D 4 HOH A 126 446 127 HOH HOH . D 4 HOH A 127 447 128 HOH HOH . D 4 HOH A 128 448 129 HOH HOH . D 4 HOH A 129 449 130 HOH HOH . D 4 HOH A 130 450 131 HOH HOH . D 4 HOH A 131 451 132 HOH HOH . D 4 HOH A 132 452 133 HOH HOH . D 4 HOH A 133 453 134 HOH HOH . D 4 HOH A 134 454 135 HOH HOH . D 4 HOH A 135 455 136 HOH HOH . D 4 HOH A 136 456 137 HOH HOH . D 4 HOH A 137 457 138 HOH HOH . D 4 HOH A 138 458 139 HOH HOH . D 4 HOH A 139 459 140 HOH HOH . D 4 HOH A 140 460 141 HOH HOH . D 4 HOH A 141 461 142 HOH HOH . D 4 HOH A 142 462 143 HOH HOH . D 4 HOH A 143 463 144 HOH HOH . D 4 HOH A 144 464 145 HOH HOH . D 4 HOH A 145 465 146 HOH HOH . D 4 HOH A 146 466 147 HOH HOH . D 4 HOH A 147 467 148 HOH HOH . D 4 HOH A 148 468 149 HOH HOH . D 4 HOH A 149 469 150 HOH HOH . D 4 HOH A 150 470 151 HOH HOH . D 4 HOH A 151 471 152 HOH HOH . D 4 HOH A 152 472 153 HOH HOH . D 4 HOH A 153 473 154 HOH HOH . D 4 HOH A 154 474 155 HOH HOH . D 4 HOH A 155 475 156 HOH HOH . D 4 HOH A 156 476 157 HOH HOH . D 4 HOH A 157 477 158 HOH HOH . D 4 HOH A 158 478 159 HOH HOH . D 4 HOH A 159 479 160 HOH HOH . D 4 HOH A 160 480 161 HOH HOH . D 4 HOH A 161 481 162 HOH HOH . D 4 HOH A 162 482 163 HOH HOH . D 4 HOH A 163 483 164 HOH HOH . D 4 HOH A 164 484 165 HOH HOH . D 4 HOH A 165 485 167 HOH HOH . D 4 HOH A 166 486 168 HOH HOH . D 4 HOH A 167 487 169 HOH HOH . D 4 HOH A 168 488 170 HOH HOH . D 4 HOH A 169 489 171 HOH HOH . D 4 HOH A 170 490 172 HOH HOH . D 4 HOH A 171 491 173 HOH HOH . D 4 HOH A 172 492 174 HOH HOH . D 4 HOH A 173 493 175 HOH HOH . D 4 HOH A 174 494 176 HOH HOH . D 4 HOH A 175 495 177 HOH HOH . D 4 HOH A 176 496 178 HOH HOH . D 4 HOH A 177 497 179 HOH HOH . D 4 HOH A 178 498 180 HOH HOH . D 4 HOH A 179 499 181 HOH HOH . D 4 HOH A 180 500 182 HOH HOH . D 4 HOH A 181 501 183 HOH HOH . D 4 HOH A 182 502 185 HOH HOH . D 4 HOH A 183 503 186 HOH HOH . D 4 HOH A 184 504 187 HOH HOH . D 4 HOH A 185 505 188 HOH HOH . D 4 HOH A 186 506 189 HOH HOH . D 4 HOH A 187 507 190 HOH HOH . D 4 HOH A 188 508 191 HOH HOH . D 4 HOH A 189 509 192 HOH HOH . D 4 HOH A 190 510 193 HOH HOH . D 4 HOH A 191 511 194 HOH HOH . D 4 HOH A 192 512 195 HOH HOH . D 4 HOH A 193 513 196 HOH HOH . D 4 HOH A 194 514 197 HOH HOH . D 4 HOH A 195 515 198 HOH HOH . D 4 HOH A 196 516 199 HOH HOH . D 4 HOH A 197 517 200 HOH HOH . D 4 HOH A 198 518 201 HOH HOH . D 4 HOH A 199 519 202 HOH HOH . D 4 HOH A 200 520 203 HOH HOH . D 4 HOH A 201 521 204 HOH HOH . D 4 HOH A 202 522 205 HOH HOH . D 4 HOH A 203 523 206 HOH HOH . D 4 HOH A 204 524 207 HOH HOH . D 4 HOH A 205 525 208 HOH HOH . D 4 HOH A 206 526 209 HOH HOH . D 4 HOH A 207 527 210 HOH HOH . D 4 HOH A 208 528 211 HOH HOH . D 4 HOH A 209 529 212 HOH HOH . D 4 HOH A 210 530 213 HOH HOH . D 4 HOH A 211 531 214 HOH HOH . D 4 HOH A 212 532 215 HOH HOH . D 4 HOH A 213 533 216 HOH HOH . D 4 HOH A 214 534 217 HOH HOH . D 4 HOH A 215 535 218 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IWH . . . C 3 140.744 77.124 29.153 1 21.83 ? C1 IWH 320 A 1 HETATM 2 N N1 IWH . . . C 3 135.378 77.576 25.435 1 16.56 ? N1 IWH 320 A 1 HETATM 3 O O1 IWH . . . C 3 135.148 79.834 25.588 1 17.9 ? O1 IWH 320 A 1 HETATM 4 C C2 IWH . . . C 3 139.347 77.236 28.585 1 23.21 ? C2 IWH 320 A 1 HETATM 5 N N2 IWH . . . C 3 135.646 75.436 21.351 1 8.36 ? N2 IWH 320 A 1 HETATM 6 O O2 IWH . . . C 3 135.776 74.019 23.067 1 18.59 ? O2 IWH 320 A 1 HETATM 7 C C3 IWH . . . C 3 139.182 77.604 27.242 1 18.77 ? C3 IWH 320 A 1 HETATM 8 C C4 IWH . . . C 3 137.9 77.715 26.661 1 18.27 ? C4 IWH 320 A 1 HETATM 9 C C5 IWH . . . C 3 136.807 77.417 27.455 1 16.69 ? C5 IWH 320 A 1 HETATM 10 C C6 IWH . . . C 3 136.967 77.068 28.803 1 23.45 ? C6 IWH 320 A 1 HETATM 11 C C7 IWH . . . C 3 138.235 76.976 29.393 1 22.91 ? C7 IWH 320 A 1 HETATM 12 C C8 IWH . . . C 3 135.765 76.731 29.724 1 27.69 ? C8 IWH 320 A 1 HETATM 13 C C9 IWH . . . C 3 135.422 77.547 26.873 1 13.61 ? C9 IWH 320 A 1 HETATM 14 C C10 IWH . . . C 3 135.538 76.418 24.734 1 12.37 ? C10 IWH 320 A 1 HETATM 15 C C11 IWH . . . C 3 135.52 76.457 23.371 1 8.32 ? C11 IWH 320 A 1 HETATM 16 C C12 IWH . . . C 3 135.361 77.709 22.67 1 13.53 ? C12 IWH 320 A 1 HETATM 17 C C13 IWH . . . C 3 135.254 78.885 23.434 1 13.82 ? C13 IWH 320 A 1 HETATM 18 C C14 IWH . . . C 3 135.251 78.783 24.833 1 18.3 ? C14 IWH 320 A 1 HETATM 19 C C15 IWH . . . C 3 135.687 75.209 22.614 1 12.76 ? C15 IWH 320 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 427 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 19 #