data_3PNK
#
_model_server_result.job_id            rgkCCb5kHxNlqnv3l7q-dA 
_model_server_result.datetime_utc      '2025-01-13 14:38:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pnk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1228}' 
#
_entry.id    3PNK 
#
_exptl.entry_id    3PNK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          89.96 
_cell.angle_gamma         90 
_cell.entry_id            3PNK 
_cell.length_a            49.833 
_cell.length_b            91.507 
_cell.length_c            73.232 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PNK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 219 A HIS 218 1_555 C C2 GOL . A GOL 1228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? 
covale ? covale2 B NE2 HIS 219 B HIS 218 1_555 D C2 GOL . B GOL 1228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3PNK 
_atom_sites.fract_transf_matrix[1][1]    0.020067 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    -0.000014 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010928 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013655 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 1228 1228 GOL GOL . 
D 2 GOL B 1 1228 1228 GOL GOL . 
E 3 HOH A 1 357 2 HOH HOH . 
E 3 HOH A 2 358 4 HOH HOH . 
E 3 HOH A 3 359 5 HOH HOH . 
E 3 HOH A 4 360 7 HOH HOH . 
E 3 HOH A 5 361 8 HOH HOH . 
E 3 HOH A 6 362 10 HOH HOH . 
E 3 HOH A 7 363 15 HOH HOH . 
E 3 HOH A 8 364 16 HOH HOH . 
E 3 HOH A 9 365 17 HOH HOH . 
E 3 HOH A 10 366 20 HOH HOH . 
E 3 HOH A 11 367 26 HOH HOH . 
E 3 HOH A 12 368 30 HOH HOH . 
E 3 HOH A 13 369 31 HOH HOH . 
E 3 HOH A 14 370 32 HOH HOH . 
E 3 HOH A 15 371 34 HOH HOH . 
E 3 HOH A 16 372 40 HOH HOH . 
E 3 HOH A 17 373 41 HOH HOH . 
E 3 HOH A 18 374 43 HOH HOH . 
E 3 HOH A 19 375 45 HOH HOH . 
E 3 HOH A 20 376 47 HOH HOH . 
E 3 HOH A 21 377 48 HOH HOH . 
E 3 HOH A 22 378 49 HOH HOH . 
E 3 HOH A 23 379 50 HOH HOH . 
E 3 HOH A 24 380 51 HOH HOH . 
E 3 HOH A 25 381 52 HOH HOH . 
E 3 HOH A 26 382 54 HOH HOH . 
E 3 HOH A 27 383 55 HOH HOH . 
E 3 HOH A 28 384 57 HOH HOH . 
E 3 HOH A 29 385 60 HOH HOH . 
E 3 HOH A 30 386 62 HOH HOH . 
E 3 HOH A 31 387 63 HOH HOH . 
E 3 HOH A 32 388 65 HOH HOH . 
E 3 HOH A 33 389 71 HOH HOH . 
E 3 HOH A 34 390 74 HOH HOH . 
E 3 HOH A 35 391 75 HOH HOH . 
E 3 HOH A 36 392 77 HOH HOH . 
E 3 HOH A 37 393 81 HOH HOH . 
E 3 HOH A 38 394 85 HOH HOH . 
E 3 HOH A 39 395 90 HOH HOH . 
E 3 HOH A 40 396 92 HOH HOH . 
E 3 HOH A 41 397 94 HOH HOH . 
E 3 HOH A 42 398 95 HOH HOH . 
E 3 HOH A 43 399 96 HOH HOH . 
E 3 HOH A 44 400 98 HOH HOH . 
E 3 HOH A 45 401 100 HOH HOH . 
E 3 HOH A 46 402 101 HOH HOH . 
E 3 HOH A 47 403 106 HOH HOH . 
E 3 HOH A 48 404 107 HOH HOH . 
E 3 HOH A 49 405 111 HOH HOH . 
E 3 HOH A 50 406 114 HOH HOH . 
E 3 HOH A 51 407 115 HOH HOH . 
E 3 HOH A 52 408 116 HOH HOH . 
E 3 HOH A 53 409 119 HOH HOH . 
E 3 HOH A 54 410 120 HOH HOH . 
E 3 HOH A 55 411 121 HOH HOH . 
E 3 HOH A 56 412 122 HOH HOH . 
E 3 HOH A 57 413 123 HOH HOH . 
E 3 HOH A 58 414 124 HOH HOH . 
E 3 HOH A 59 415 125 HOH HOH . 
E 3 HOH A 60 416 126 HOH HOH . 
E 3 HOH A 61 417 127 HOH HOH . 
E 3 HOH A 62 418 129 HOH HOH . 
E 3 HOH A 63 419 130 HOH HOH . 
E 3 HOH A 64 420 131 HOH HOH . 
E 3 HOH A 65 421 132 HOH HOH . 
E 3 HOH A 66 422 133 HOH HOH . 
E 3 HOH A 67 423 148 HOH HOH . 
E 3 HOH A 68 424 149 HOH HOH . 
E 3 HOH A 69 425 150 HOH HOH . 
E 3 HOH A 70 426 151 HOH HOH . 
E 3 HOH A 71 427 152 HOH HOH . 
E 3 HOH A 72 428 153 HOH HOH . 
E 3 HOH A 73 429 154 HOH HOH . 
E 3 HOH A 74 430 155 HOH HOH . 
E 3 HOH A 75 431 156 HOH HOH . 
E 3 HOH A 76 432 157 HOH HOH . 
E 3 HOH A 77 433 159 HOH HOH . 
E 3 HOH A 78 434 160 HOH HOH . 
E 3 HOH A 79 435 168 HOH HOH . 
E 3 HOH A 80 436 170 HOH HOH . 
F 3 HOH B 1 357 1 HOH HOH . 
F 3 HOH B 2 358 3 HOH HOH . 
F 3 HOH B 3 359 6 HOH HOH . 
F 3 HOH B 4 360 9 HOH HOH . 
F 3 HOH B 5 361 11 HOH HOH . 
F 3 HOH B 6 362 12 HOH HOH . 
F 3 HOH B 7 363 13 HOH HOH . 
F 3 HOH B 8 364 14 HOH HOH . 
F 3 HOH B 9 365 18 HOH HOH . 
F 3 HOH B 10 366 19 HOH HOH . 
F 3 HOH B 11 367 21 HOH HOH . 
F 3 HOH B 12 368 22 HOH HOH . 
F 3 HOH B 13 369 23 HOH HOH . 
F 3 HOH B 14 370 25 HOH HOH . 
F 3 HOH B 15 371 27 HOH HOH . 
F 3 HOH B 16 372 28 HOH HOH . 
F 3 HOH B 17 373 29 HOH HOH . 
F 3 HOH B 18 374 33 HOH HOH . 
F 3 HOH B 19 375 35 HOH HOH . 
F 3 HOH B 20 376 36 HOH HOH . 
F 3 HOH B 21 377 37 HOH HOH . 
F 3 HOH B 22 378 39 HOH HOH . 
F 3 HOH B 23 379 42 HOH HOH . 
F 3 HOH B 24 380 44 HOH HOH . 
F 3 HOH B 25 381 46 HOH HOH . 
F 3 HOH B 26 382 53 HOH HOH . 
F 3 HOH B 27 383 56 HOH HOH . 
F 3 HOH B 28 384 58 HOH HOH . 
F 3 HOH B 29 385 59 HOH HOH . 
F 3 HOH B 30 386 61 HOH HOH . 
F 3 HOH B 31 387 64 HOH HOH . 
F 3 HOH B 32 388 66 HOH HOH . 
F 3 HOH B 33 389 67 HOH HOH . 
F 3 HOH B 34 390 68 HOH HOH . 
F 3 HOH B 35 391 69 HOH HOH . 
F 3 HOH B 36 392 70 HOH HOH . 
F 3 HOH B 37 393 72 HOH HOH . 
F 3 HOH B 38 394 76 HOH HOH . 
F 3 HOH B 39 395 78 HOH HOH . 
F 3 HOH B 40 396 79 HOH HOH . 
F 3 HOH B 41 397 80 HOH HOH . 
F 3 HOH B 42 398 82 HOH HOH . 
F 3 HOH B 43 399 83 HOH HOH . 
F 3 HOH B 44 400 84 HOH HOH . 
F 3 HOH B 45 401 86 HOH HOH . 
F 3 HOH B 46 402 87 HOH HOH . 
F 3 HOH B 47 403 88 HOH HOH . 
F 3 HOH B 48 404 89 HOH HOH . 
F 3 HOH B 49 405 91 HOH HOH . 
F 3 HOH B 50 406 93 HOH HOH . 
F 3 HOH B 51 407 97 HOH HOH . 
F 3 HOH B 52 408 99 HOH HOH . 
F 3 HOH B 53 409 102 HOH HOH . 
F 3 HOH B 54 410 103 HOH HOH . 
F 3 HOH B 55 411 104 HOH HOH . 
F 3 HOH B 56 412 105 HOH HOH . 
F 3 HOH B 57 413 108 HOH HOH . 
F 3 HOH B 58 414 110 HOH HOH . 
F 3 HOH B 59 415 113 HOH HOH . 
F 3 HOH B 60 416 117 HOH HOH . 
F 3 HOH B 61 417 118 HOH HOH . 
F 3 HOH B 62 418 128 HOH HOH . 
F 3 HOH B 63 419 134 HOH HOH . 
F 3 HOH B 64 420 135 HOH HOH . 
F 3 HOH B 65 421 136 HOH HOH . 
F 3 HOH B 66 422 137 HOH HOH . 
F 3 HOH B 67 423 138 HOH HOH . 
F 3 HOH B 68 424 139 HOH HOH . 
F 3 HOH B 69 425 140 HOH HOH . 
F 3 HOH B 70 426 141 HOH HOH . 
F 3 HOH B 71 427 142 HOH HOH . 
F 3 HOH B 72 428 143 HOH HOH . 
F 3 HOH B 73 429 144 HOH HOH . 
F 3 HOH B 74 430 145 HOH HOH . 
F 3 HOH B 75 431 146 HOH HOH . 
F 3 HOH B 76 432 147 HOH HOH . 
F 3 HOH B 77 433 158 HOH HOH . 
F 3 HOH B 78 434 161 HOH HOH . 
F 3 HOH B 79 435 162 HOH HOH . 
F 3 HOH B 80 436 163 HOH HOH . 
F 3 HOH B 81 437 164 HOH HOH . 
F 3 HOH B 82 438 165 HOH HOH . 
F 3 HOH B 83 439 166 HOH HOH . 
F 3 HOH B 84 440 167 HOH HOH . 
F 3 HOH B 85 441 169 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 20.323 3.789 20.411 1 23.53 ? C1 GOL 1228 A 1 
HETATM 2 O O1 GOL . . . C 2 19.309 4.393 19.643 1 22.64 ? O1 GOL 1228 A 1 
HETATM 3 C C2 GOL . . . C 2 21.671 3.916 19.7 1 23.15 ? C2 GOL 1228 A 1 
HETATM 4 O O2 GOL . . . C 2 21.806 3.002 18.651 1 23.41 ? O2 GOL 1228 A 1 
HETATM 5 C C3 GOL . . . C 2 22.078 5.337 19.268 1 25.2 ? C3 GOL 1228 A 1 
HETATM 6 O O3 GOL . . . C 2 22.182 6.137 20.421 1 23.85 ? O3 GOL 1228 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#