data_3PNR
#
_model_server_result.job_id            OltYtm2cHQ8mrenvwIlCPw 
_model_server_result.datetime_utc      '2025-09-09 03:25:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pnr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":242}' 
#
_entry.id    3PNR 
#
_exptl.entry_id    3PNR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3PNR 
_cell.length_a            71.15 
_cell.length_b            71.15 
_cell.length_c            120.09 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PNR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 38 A CYS 39 1_555 A SG CYS 79 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 A SG CYS 72 A CYS 73 1_555 A SG CYS 113 A CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 A SG CYS 98 A CYS 99 1_555 A SG CYS 118 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf4 A SG CYS 167 A CYS 168 1_555 A SG CYS 228 A CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc1 A OD1 ASP 153 A ASP 154 1_555 G CD CD . B CD 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? 
metalc ? metalc2 H O HOH . A HOH 273 1_555 G CD CD . B CD 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
metalc ? metalc3 B ND1 HIS 75 B HIS 242 1_555 F CD CD . B CD 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc4 B OD1 ASP 77 B ASP 244 1_555 F CD CD . B CD 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc5 B OD2 ASP 77 B ASP 244 1_555 F CD CD . B CD 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? 
metalc ? metalc6 B SD MET 149 B MET 316 1_555 G CD CD . B CD 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? 
metalc ? metalc7 F CD CD . B CD 355 1_555 I O HOH . B HOH 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? 
metalc ? metalc8 G CD CD . B CD 356 1_555 I O HOH . B HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3PNR 
_atom_sites.fract_transf_matrix[1][1]    0.014055 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014055 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008327 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 242 242 GOL GOL . 
D 3 GOL A 1 243 243 GOL GOL . 
E 3 GOL A 1 244 244 GOL GOL . 
F 4 CD B 1 355 355 CD CD . 
G 4 CD B 1 356 356 CD CD . 
H 5 HOH A 1 245 245 HOH HOH . 
H 5 HOH A 2 246 246 HOH HOH . 
H 5 HOH A 3 247 247 HOH HOH . 
H 5 HOH A 4 248 248 HOH HOH . 
H 5 HOH A 5 249 249 HOH HOH . 
H 5 HOH A 6 250 250 HOH HOH . 
H 5 HOH A 7 251 251 HOH HOH . 
H 5 HOH A 8 252 252 HOH HOH . 
H 5 HOH A 9 253 253 HOH HOH . 
H 5 HOH A 10 254 254 HOH HOH . 
H 5 HOH A 11 255 255 HOH HOH . 
H 5 HOH A 12 256 256 HOH HOH . 
H 5 HOH A 13 257 257 HOH HOH . 
H 5 HOH A 14 258 258 HOH HOH . 
H 5 HOH A 15 259 259 HOH HOH . 
H 5 HOH A 16 260 260 HOH HOH . 
H 5 HOH A 17 261 261 HOH HOH . 
H 5 HOH A 18 262 262 HOH HOH . 
H 5 HOH A 19 263 263 HOH HOH . 
H 5 HOH A 20 264 264 HOH HOH . 
H 5 HOH A 21 265 265 HOH HOH . 
H 5 HOH A 22 266 266 HOH HOH . 
H 5 HOH A 23 267 267 HOH HOH . 
H 5 HOH A 24 268 268 HOH HOH . 
H 5 HOH A 25 269 269 HOH HOH . 
H 5 HOH A 26 270 270 HOH HOH . 
H 5 HOH A 27 271 271 HOH HOH . 
H 5 HOH A 28 272 272 HOH HOH . 
H 5 HOH A 29 273 273 HOH HOH . 
H 5 HOH A 30 274 274 HOH HOH . 
H 5 HOH A 31 275 275 HOH HOH . 
H 5 HOH A 32 276 276 HOH HOH . 
H 5 HOH A 33 277 277 HOH HOH . 
H 5 HOH A 34 278 278 HOH HOH . 
H 5 HOH A 35 279 279 HOH HOH . 
H 5 HOH A 36 280 280 HOH HOH . 
H 5 HOH A 37 281 281 HOH HOH . 
H 5 HOH A 38 282 282 HOH HOH . 
H 5 HOH A 39 283 283 HOH HOH . 
H 5 HOH A 40 284 284 HOH HOH . 
H 5 HOH A 41 285 285 HOH HOH . 
H 5 HOH A 42 286 286 HOH HOH . 
H 5 HOH A 43 287 287 HOH HOH . 
H 5 HOH A 44 288 288 HOH HOH . 
H 5 HOH A 45 289 289 HOH HOH . 
H 5 HOH A 46 290 290 HOH HOH . 
H 5 HOH A 47 291 291 HOH HOH . 
I 5 HOH B 1 357 357 HOH HOH . 
I 5 HOH B 2 358 358 HOH HOH . 
I 5 HOH B 3 359 359 HOH HOH . 
I 5 HOH B 4 360 360 HOH HOH . 
I 5 HOH B 5 361 361 HOH HOH . 
I 5 HOH B 6 362 362 HOH HOH . 
I 5 HOH B 7 363 363 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 9.312 21.209 -1.555 1 59.07 ? C1 GOL 242 A 1 
HETATM 2 O O1 GOL . . . C 3 9.306 21.688 -0.225 1 61.26 ? O1 GOL 242 A 1 
HETATM 3 C C2 GOL . . . C 3 9.668 19.732 -1.504 1 68.54 ? C2 GOL 242 A 1 
HETATM 4 O O2 GOL . . . C 3 8.611 18.992 -0.925 1 73.11 ? O2 GOL 242 A 1 
HETATM 5 C C3 GOL . . . C 3 10.961 19.543 -0.701 1 64.16 ? C3 GOL 242 A 1 
HETATM 6 O O3 GOL . . . C 3 12.108 19.83 -1.485 1 49.04 ? O3 GOL 242 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#