data_3PO0 # _model_server_result.job_id Qn74sWa-V4FbxrBhTg4Euw _model_server_result.datetime_utc '2025-07-02 03:05:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3po0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":89}' # _entry.id 3PO0 # _exptl.entry_id 3PO0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PO0 _cell.length_a 41.881 _cell.length_b 42.251 _cell.length_c 43.568 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PO0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 32 A ASP 30 1_555 D CD CD . A CD 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc2 A OD1 ASP 32 A ASP 30 1_555 D CD CD . A CD 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc3 A OE1 GLU 45 A GLU 43 1_555 F MG MG . A MG 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc4 A OE2 GLU 45 A GLU 43 1_555 F MG MG . A MG 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc5 A OD2 ASP 51 A ASP 49 1_555 E MG MG . A MG 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc6 A OD1 ASP 51 A ASP 49 1_555 E MG MG . A MG 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc7 A OD1 ASP 57 A ASP 55 1_555 C CD CD . A CD 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc8 A ND1 HIS 58 A HIS 56 1_555 C CD CD . A CD 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc9 E MG MG . A MG 91 1_555 G O HOH . A HOH 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc10 E MG MG . A MG 91 1_555 G O HOH . A HOH 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc11 E MG MG . A MG 91 1_555 G O HOH . A HOH 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc12 F MG MG . A MG 92 1_555 G O HOH . A HOH 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc13 F MG MG . A MG 92 1_555 G O HOH . A HOH 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc14 F MG MG . A MG 92 1_555 G O HOH . A HOH 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc15 F MG MG . A MG 92 1_555 G O HOH . A HOH 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3PO0 _atom_sites.fract_transf_matrix[1][1] 0.023877 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023668 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 88 1 ACT ACT . C 3 CD A 1 89 2 CD CD . D 3 CD A 1 90 3 CD CD . E 4 MG A 1 91 4 MG MG . F 4 MG A 1 92 5 MG MG . G 5 HOH A 1 93 1 HOH HOH . G 5 HOH A 2 94 2 HOH HOH . G 5 HOH A 3 95 3 HOH HOH . G 5 HOH A 4 96 4 HOH HOH . G 5 HOH A 5 97 6 HOH HOH . G 5 HOH A 6 98 7 HOH HOH . G 5 HOH A 7 99 8 HOH HOH . G 5 HOH A 8 100 9 HOH HOH . G 5 HOH A 9 101 10 HOH HOH . G 5 HOH A 10 102 11 HOH HOH . G 5 HOH A 11 103 12 HOH HOH . G 5 HOH A 12 104 13 HOH HOH . G 5 HOH A 13 105 14 HOH HOH . G 5 HOH A 14 106 15 HOH HOH . G 5 HOH A 15 107 16 HOH HOH . G 5 HOH A 16 108 17 HOH HOH . G 5 HOH A 17 109 18 HOH HOH . G 5 HOH A 18 110 19 HOH HOH . G 5 HOH A 19 111 20 HOH HOH . G 5 HOH A 20 112 21 HOH HOH . G 5 HOH A 21 113 22 HOH HOH . G 5 HOH A 22 114 23 HOH HOH . G 5 HOH A 23 115 24 HOH HOH . G 5 HOH A 24 116 25 HOH HOH . G 5 HOH A 25 117 26 HOH HOH . G 5 HOH A 26 118 27 HOH HOH . G 5 HOH A 27 119 28 HOH HOH . G 5 HOH A 28 120 29 HOH HOH . G 5 HOH A 29 121 30 HOH HOH . G 5 HOH A 30 122 31 HOH HOH . G 5 HOH A 31 123 32 HOH HOH . G 5 HOH A 32 124 33 HOH HOH . G 5 HOH A 33 125 34 HOH HOH . G 5 HOH A 34 126 35 HOH HOH . G 5 HOH A 35 127 36 HOH HOH . G 5 HOH A 36 128 37 HOH HOH . G 5 HOH A 37 129 38 HOH HOH . G 5 HOH A 38 130 39 HOH HOH . G 5 HOH A 39 131 40 HOH HOH . G 5 HOH A 40 132 41 HOH HOH . G 5 HOH A 41 133 42 HOH HOH . G 5 HOH A 42 134 43 HOH HOH . G 5 HOH A 43 135 44 HOH HOH . G 5 HOH A 44 136 45 HOH HOH . G 5 HOH A 45 137 46 HOH HOH . G 5 HOH A 46 138 47 HOH HOH . G 5 HOH A 47 139 48 HOH HOH . G 5 HOH A 48 140 49 HOH HOH . G 5 HOH A 49 141 50 HOH HOH . G 5 HOH A 50 142 51 HOH HOH . G 5 HOH A 51 143 52 HOH HOH . G 5 HOH A 52 144 53 HOH HOH . G 5 HOH A 53 145 54 HOH HOH . G 5 HOH A 54 146 55 HOH HOH . G 5 HOH A 55 147 56 HOH HOH . G 5 HOH A 56 148 57 HOH HOH . G 5 HOH A 57 149 58 HOH HOH . G 5 HOH A 58 150 59 HOH HOH . G 5 HOH A 59 151 60 HOH HOH . G 5 HOH A 60 152 61 HOH HOH . G 5 HOH A 61 153 62 HOH HOH . G 5 HOH A 62 154 63 HOH HOH . G 5 HOH A 63 155 64 HOH HOH . G 5 HOH A 64 156 65 HOH HOH . G 5 HOH A 65 157 66 HOH HOH . G 5 HOH A 66 158 67 HOH HOH . G 5 HOH A 67 159 68 HOH HOH . G 5 HOH A 68 160 69 HOH HOH . G 5 HOH A 69 161 70 HOH HOH . G 5 HOH A 70 162 71 HOH HOH . G 5 HOH A 71 163 72 HOH HOH . G 5 HOH A 72 164 73 HOH HOH . G 5 HOH A 73 165 74 HOH HOH . G 5 HOH A 74 166 75 HOH HOH . G 5 HOH A 75 167 76 HOH HOH . G 5 HOH A 76 168 77 HOH HOH . G 5 HOH A 77 169 78 HOH HOH . G 5 HOH A 78 170 79 HOH HOH . G 5 HOH A 79 171 80 HOH HOH . G 5 HOH A 80 172 81 HOH HOH . G 5 HOH A 81 173 82 HOH HOH . G 5 HOH A 82 174 83 HOH HOH . G 5 HOH A 83 175 84 HOH HOH . G 5 HOH A 84 176 85 HOH HOH . G 5 HOH A 85 177 86 HOH HOH . G 5 HOH A 86 178 87 HOH HOH . G 5 HOH A 87 179 88 HOH HOH . G 5 HOH A 88 180 89 HOH HOH . G 5 HOH A 89 181 90 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -16.272 _atom_site.Cartn_y 14.314 _atom_site.Cartn_z -2.176 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 89 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #