data_3PO1 # _model_server_result.job_id ORxE28GiDV-yFPlmLfyL3Q _model_server_result.datetime_utc '2024-12-27 00:42:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3po1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 3PO1 # _exptl.entry_id 3PO1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.82 _cell.angle_gamma 90 _cell.entry_id 3PO1 _cell.length_a 68.662 _cell.length_b 71.414 _cell.length_c 71.88 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PO1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 9 1_555 B SG CYS 119 B CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf2 B SG CYS 28 B CYS 64 1_555 B SG CYS 44 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? disulf ? disulf3 C SG CYS 19 C CYS 203 1_555 C SG CYS 33 C CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf4 C SG CYS 47 C CYS 231 1_555 C SG CYS 77 C CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 D C TYS 9 D TYS 363 1_555 D N LEU 10 D LEU 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? metalc ? metalc1 J O HOH . C HOH 10 1_555 F NA NA . C NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc2 J O HOH . C HOH 28 1_555 F NA NA . C NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? metalc ? metalc3 J O HOH . C HOH 47 1_555 F NA NA . C NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc4 J O HOH . C HOH 56 1_555 F NA NA . C NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc5 C O ARG 79 C ARG 263 1_555 F NA NA . C NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc6 C O LYS 82 C LYS 266 1_555 F NA NA . C NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3PO1 _atom_sites.fract_transf_matrix[1][1] 0.014564 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00252 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014003 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MKY C 1 1 1 MKY MKY . F 6 NA C 1 402 402 NA NA . G 7 ACT C 1 287 1 ACT ACT . H 8 HOH A 1 34 8 HOH HOH . H 8 HOH A 2 35 35 HOH HOH . H 8 HOH A 3 36 19 HOH HOH . H 8 HOH A 4 40 40 HOH HOH . H 8 HOH A 5 45 45 HOH HOH . H 8 HOH A 6 50 50 HOH HOH . H 8 HOH A 7 52 52 HOH HOH . H 8 HOH A 8 57 57 HOH HOH . H 8 HOH A 9 59 59 HOH HOH . H 8 HOH A 10 61 61 HOH HOH . H 8 HOH A 11 62 62 HOH HOH . H 8 HOH A 12 65 65 HOH HOH . H 8 HOH A 13 77 77 HOH HOH . H 8 HOH A 14 88 88 HOH HOH . H 8 HOH A 15 98 98 HOH HOH . H 8 HOH A 16 107 107 HOH HOH . H 8 HOH A 17 110 110 HOH HOH . H 8 HOH A 18 113 113 HOH HOH . H 8 HOH A 19 121 121 HOH HOH . H 8 HOH A 20 123 123 HOH HOH . I 8 HOH B 1 3 3 HOH HOH . I 8 HOH B 2 4 4 HOH HOH . I 8 HOH B 3 5 5 HOH HOH . I 8 HOH B 4 6 6 HOH HOH . I 8 HOH B 5 11 11 HOH HOH . I 8 HOH B 6 13 13 HOH HOH . I 8 HOH B 7 14 14 HOH HOH . I 8 HOH B 8 16 16 HOH HOH . I 8 HOH B 9 21 21 HOH HOH . I 8 HOH B 10 23 23 HOH HOH . I 8 HOH B 11 24 24 HOH HOH . I 8 HOH B 12 26 26 HOH HOH . I 8 HOH B 13 29 29 HOH HOH . I 8 HOH B 14 30 30 HOH HOH . I 8 HOH B 15 31 31 HOH HOH . I 8 HOH B 16 36 36 HOH HOH . I 8 HOH B 17 184 37 HOH HOH . I 8 HOH B 18 185 38 HOH HOH . I 8 HOH B 19 186 39 HOH HOH . I 8 HOH B 20 187 44 HOH HOH . I 8 HOH B 21 188 46 HOH HOH . I 8 HOH B 22 189 48 HOH HOH . I 8 HOH B 23 190 49 HOH HOH . I 8 HOH B 24 191 51 HOH HOH . I 8 HOH B 25 192 54 HOH HOH . I 8 HOH B 26 193 60 HOH HOH . I 8 HOH B 27 194 64 HOH HOH . I 8 HOH B 28 195 66 HOH HOH . I 8 HOH B 29 196 67 HOH HOH . I 8 HOH B 30 197 69 HOH HOH . I 8 HOH B 31 198 74 HOH HOH . I 8 HOH B 32 199 79 HOH HOH . I 8 HOH B 33 200 80 HOH HOH . I 8 HOH B 34 201 82 HOH HOH . I 8 HOH B 35 202 83 HOH HOH . I 8 HOH B 36 203 86 HOH HOH . I 8 HOH B 37 204 89 HOH HOH . I 8 HOH B 38 205 90 HOH HOH . I 8 HOH B 39 206 93 HOH HOH . I 8 HOH B 40 207 95 HOH HOH . I 8 HOH B 41 208 97 HOH HOH . I 8 HOH B 42 209 100 HOH HOH . I 8 HOH B 43 210 101 HOH HOH . I 8 HOH B 44 211 102 HOH HOH . I 8 HOH B 45 212 105 HOH HOH . I 8 HOH B 46 213 109 HOH HOH . I 8 HOH B 47 214 111 HOH HOH . I 8 HOH B 48 215 112 HOH HOH . I 8 HOH B 49 216 115 HOH HOH . I 8 HOH B 50 217 116 HOH HOH . I 8 HOH B 51 218 117 HOH HOH . I 8 HOH B 52 219 118 HOH HOH . I 8 HOH B 53 220 119 HOH HOH . I 8 HOH B 54 221 122 HOH HOH . I 8 HOH B 55 222 124 HOH HOH . I 8 HOH B 56 223 125 HOH HOH . I 8 HOH B 57 224 126 HOH HOH . I 8 HOH B 58 225 127 HOH HOH . I 8 HOH B 59 226 128 HOH HOH . I 8 HOH B 60 227 129 HOH HOH . I 8 HOH B 61 228 130 HOH HOH . I 8 HOH B 62 229 132 HOH HOH . I 8 HOH B 63 230 133 HOH HOH . I 8 HOH B 64 231 135 HOH HOH . I 8 HOH B 65 232 136 HOH HOH . I 8 HOH B 66 233 137 HOH HOH . I 8 HOH B 67 234 138 HOH HOH . I 8 HOH B 68 235 139 HOH HOH . I 8 HOH B 69 236 141 HOH HOH . J 8 HOH C 1 2 2 HOH HOH . J 8 HOH C 2 7 7 HOH HOH . J 8 HOH C 3 9 9 HOH HOH . J 8 HOH C 4 10 10 HOH HOH . J 8 HOH C 5 12 12 HOH HOH . J 8 HOH C 6 15 15 HOH HOH . J 8 HOH C 7 17 17 HOH HOH . J 8 HOH C 8 18 18 HOH HOH . J 8 HOH C 9 20 20 HOH HOH . J 8 HOH C 10 22 22 HOH HOH . J 8 HOH C 11 25 25 HOH HOH . J 8 HOH C 12 27 27 HOH HOH . J 8 HOH C 13 28 28 HOH HOH . J 8 HOH C 14 32 32 HOH HOH . J 8 HOH C 15 33 33 HOH HOH . J 8 HOH C 16 34 34 HOH HOH . J 8 HOH C 17 41 41 HOH HOH . J 8 HOH C 18 42 42 HOH HOH . J 8 HOH C 19 43 43 HOH HOH . J 8 HOH C 20 47 47 HOH HOH . J 8 HOH C 21 53 53 HOH HOH . J 8 HOH C 22 55 55 HOH HOH . J 8 HOH C 23 56 56 HOH HOH . J 8 HOH C 24 58 58 HOH HOH . J 8 HOH C 25 63 63 HOH HOH . J 8 HOH C 26 68 68 HOH HOH . J 8 HOH C 27 70 70 HOH HOH . J 8 HOH C 28 71 71 HOH HOH . J 8 HOH C 29 72 72 HOH HOH . J 8 HOH C 30 73 73 HOH HOH . J 8 HOH C 31 75 75 HOH HOH . J 8 HOH C 32 76 76 HOH HOH . J 8 HOH C 33 78 78 HOH HOH . J 8 HOH C 34 81 81 HOH HOH . J 8 HOH C 35 84 84 HOH HOH . J 8 HOH C 36 85 85 HOH HOH . J 8 HOH C 37 87 87 HOH HOH . J 8 HOH C 38 91 91 HOH HOH . J 8 HOH C 39 92 92 HOH HOH . J 8 HOH C 40 94 94 HOH HOH . J 8 HOH C 41 96 96 HOH HOH . J 8 HOH C 42 99 99 HOH HOH . J 8 HOH C 43 104 104 HOH HOH . J 8 HOH C 44 106 106 HOH HOH . J 8 HOH C 45 108 108 HOH HOH . J 8 HOH C 46 114 114 HOH HOH . J 8 HOH C 47 131 131 HOH HOH . J 8 HOH C 48 140 140 HOH HOH . J 8 HOH C 49 288 1 HOH HOH . K 8 HOH D 1 103 103 HOH HOH . K 8 HOH D 2 120 120 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 6 _atom_site.Cartn_x 5.575 _atom_site.Cartn_y -12.889 _atom_site.Cartn_z 30.18 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.08 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 572 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #