data_3PO5 # _model_server_result.job_id fo1kcC0cY9L0OxmGhNwUsQ _model_server_result.datetime_utc '2024-11-13 04:15:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3po5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 3PO5 # _exptl.entry_id 3PO5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PO5 _cell.length_a 109.301 _cell.length_b 109.301 _cell.length_c 90.318 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PO5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DC 11 B DC 111 1_555 B P 2DA 12 B 2DA 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? covale ? covale2 C O3' 3DR 1 C 3DR 204 1_555 C P DT 2 C DT 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? metalc ? metalc1 D MG MG . A MG 1 1_555 I O HOH . A HOH 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc2 D MG MG . A MG 1 1_555 G O2B DDS . A DDS 835 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc3 D MG MG . A MG 1 1_555 G O2A DDS . A DDS 835 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? hydrog WATSON-CRICK hydrog1 B N1 DG 1 B DG 101 1_555 C N3 DC 13 C DC 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 1 B DG 101 1_555 C O2 DC 13 C DC 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 1 B DG 101 1_555 C N4 DC 13 C DC 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DA 2 B DA 102 1_555 C N3 DT 12 C DT 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N6 DA 2 B DA 102 1_555 C O4 DT 12 C DT 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N3 DC 3 B DC 103 1_555 C N1 DG 11 C DG 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N4 DC 3 B DC 103 1_555 C O6 DG 11 C DG 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O2 DC 3 B DC 103 1_555 C N2 DG 11 C DG 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N3 DC 4 B DC 104 1_555 C N1 DG 10 C DG 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N4 DC 4 B DC 104 1_555 C O6 DG 10 C DG 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O2 DC 4 B DC 104 1_555 C N2 DG 10 C DG 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 DA 5 B DA 105 1_555 C N3 DT 9 C DT 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N6 DA 5 B DA 105 1_555 C O4 DT 9 C DT 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 DC 6 B DC 106 1_555 C N1 DG 8 C DG 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N4 DC 6 B DC 106 1_555 C O6 DG 8 C DG 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O2 DC 6 B DC 106 1_555 C N2 DG 8 C DG 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N1 DG 7 B DG 107 1_555 C N3 DC 7 C DC 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N2 DG 7 B DG 107 1_555 C O2 DC 7 C DC 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O6 DG 7 B DG 107 1_555 C N4 DC 7 C DC 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N1 DG 8 B DG 108 1_555 C N3 DC 6 C DC 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N2 DG 8 B DG 108 1_555 C O2 DC 6 C DC 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O6 DG 8 B DG 108 1_555 C N4 DC 6 C DC 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N3 DC 9 B DC 109 1_555 C N1 DG 5 C DG 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N4 DC 9 B DC 109 1_555 C O6 DG 5 C DG 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B O2 DC 9 B DC 109 1_555 C N2 DG 5 C DG 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N1 DG 10 B DG 110 1_555 C N3 DC 4 C DC 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N2 DG 10 B DG 110 1_555 C O2 DC 4 C DC 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B O6 DG 10 B DG 110 1_555 C N4 DC 4 C DC 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N3 DC 11 B DC 111 1_555 C N1 DG 3 C DG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B N4 DC 11 B DC 111 1_555 C O6 DG 3 C DG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B O2 DC 11 B DC 111 1_555 C N2 DG 3 C DG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 B N1 2DA 12 B 2DA 112 1_555 C N3 DT 2 C DT 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 B N6 2DA 12 B 2DA 112 1_555 C O4 DT 2 C DT 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3PO5 _atom_sites.fract_transf_matrix[1][1] 0.009149 _atom_sites.fract_transf_matrix[1][2] 0.005282 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 1 1 MG MG . E 5 PGE A 1 833 833 PGE PGE . F 5 PGE A 1 834 834 PGE PGE . G 6 DDS A 1 835 835 DDS DDS . H 7 GOL B 1 1 1 GOL GOL . I 8 HOH A 1 3 3 HOH HOH . I 8 HOH A 2 4 4 HOH HOH . I 8 HOH A 3 6 6 HOH HOH . I 8 HOH A 4 9 9 HOH HOH . I 8 HOH A 5 10 10 HOH HOH . I 8 HOH A 6 12 12 HOH HOH . I 8 HOH A 7 13 13 HOH HOH . I 8 HOH A 8 14 14 HOH HOH . I 8 HOH A 9 15 15 HOH HOH . I 8 HOH A 10 16 16 HOH HOH . I 8 HOH A 11 19 19 HOH HOH . I 8 HOH A 12 20 20 HOH HOH . I 8 HOH A 13 21 21 HOH HOH . I 8 HOH A 14 23 23 HOH HOH . I 8 HOH A 15 24 24 HOH HOH . I 8 HOH A 16 25 25 HOH HOH . I 8 HOH A 17 28 28 HOH HOH . I 8 HOH A 18 29 29 HOH HOH . I 8 HOH A 19 32 32 HOH HOH . I 8 HOH A 20 33 33 HOH HOH . I 8 HOH A 21 34 34 HOH HOH . I 8 HOH A 22 35 35 HOH HOH . I 8 HOH A 23 37 37 HOH HOH . I 8 HOH A 24 38 38 HOH HOH . I 8 HOH A 25 39 39 HOH HOH . I 8 HOH A 26 40 40 HOH HOH . I 8 HOH A 27 42 42 HOH HOH . I 8 HOH A 28 43 43 HOH HOH . I 8 HOH A 29 44 44 HOH HOH . I 8 HOH A 30 45 45 HOH HOH . I 8 HOH A 31 46 46 HOH HOH . I 8 HOH A 32 47 47 HOH HOH . I 8 HOH A 33 48 48 HOH HOH . I 8 HOH A 34 49 49 HOH HOH . I 8 HOH A 35 50 50 HOH HOH . I 8 HOH A 36 52 52 HOH HOH . I 8 HOH A 37 53 53 HOH HOH . I 8 HOH A 38 54 54 HOH HOH . I 8 HOH A 39 55 55 HOH HOH . I 8 HOH A 40 58 58 HOH HOH . I 8 HOH A 41 61 61 HOH HOH . I 8 HOH A 42 62 62 HOH HOH . I 8 HOH A 43 64 64 HOH HOH . I 8 HOH A 44 66 66 HOH HOH . I 8 HOH A 45 69 69 HOH HOH . I 8 HOH A 46 70 70 HOH HOH . I 8 HOH A 47 71 71 HOH HOH . I 8 HOH A 48 72 72 HOH HOH . I 8 HOH A 49 73 73 HOH HOH . I 8 HOH A 50 74 74 HOH HOH . I 8 HOH A 51 75 75 HOH HOH . I 8 HOH A 52 77 77 HOH HOH . I 8 HOH A 53 79 79 HOH HOH . I 8 HOH A 54 80 80 HOH HOH . I 8 HOH A 55 81 81 HOH HOH . I 8 HOH A 56 82 82 HOH HOH . I 8 HOH A 57 83 83 HOH HOH . I 8 HOH A 58 84 84 HOH HOH . I 8 HOH A 59 85 85 HOH HOH . I 8 HOH A 60 86 86 HOH HOH . I 8 HOH A 61 87 87 HOH HOH . I 8 HOH A 62 88 88 HOH HOH . I 8 HOH A 63 89 89 HOH HOH . I 8 HOH A 64 90 90 HOH HOH . I 8 HOH A 65 91 91 HOH HOH . I 8 HOH A 66 92 92 HOH HOH . I 8 HOH A 67 93 93 HOH HOH . I 8 HOH A 68 94 94 HOH HOH . I 8 HOH A 69 95 95 HOH HOH . I 8 HOH A 70 96 96 HOH HOH . I 8 HOH A 71 98 98 HOH HOH . I 8 HOH A 72 99 99 HOH HOH . I 8 HOH A 73 102 102 HOH HOH . I 8 HOH A 74 103 103 HOH HOH . I 8 HOH A 75 104 104 HOH HOH . I 8 HOH A 76 108 108 HOH HOH . I 8 HOH A 77 109 109 HOH HOH . I 8 HOH A 78 111 111 HOH HOH . I 8 HOH A 79 112 112 HOH HOH . I 8 HOH A 80 113 113 HOH HOH . I 8 HOH A 81 114 114 HOH HOH . I 8 HOH A 82 115 115 HOH HOH . I 8 HOH A 83 117 117 HOH HOH . I 8 HOH A 84 118 118 HOH HOH . I 8 HOH A 85 120 120 HOH HOH . I 8 HOH A 86 121 121 HOH HOH . I 8 HOH A 87 122 122 HOH HOH . I 8 HOH A 88 123 123 HOH HOH . I 8 HOH A 89 124 124 HOH HOH . I 8 HOH A 90 125 125 HOH HOH . I 8 HOH A 91 126 126 HOH HOH . I 8 HOH A 92 128 128 HOH HOH . I 8 HOH A 93 129 129 HOH HOH . I 8 HOH A 94 130 130 HOH HOH . I 8 HOH A 95 131 131 HOH HOH . I 8 HOH A 96 836 836 HOH HOH . J 8 HOH B 1 7 7 HOH HOH . J 8 HOH B 2 8 8 HOH HOH . J 8 HOH B 3 18 18 HOH HOH . J 8 HOH B 4 22 22 HOH HOH . J 8 HOH B 5 36 36 HOH HOH . J 8 HOH B 6 51 51 HOH HOH . J 8 HOH B 7 57 57 HOH HOH . J 8 HOH B 8 59 59 HOH HOH . J 8 HOH B 9 60 60 HOH HOH . J 8 HOH B 10 63 63 HOH HOH . J 8 HOH B 11 97 97 HOH HOH . J 8 HOH B 12 113 113 HOH HOH . K 8 HOH C 1 2 2 HOH HOH . K 8 HOH C 2 5 5 HOH HOH . K 8 HOH C 3 11 11 HOH HOH . K 8 HOH C 4 17 17 HOH HOH . K 8 HOH C 5 26 26 HOH HOH . K 8 HOH C 6 27 27 HOH HOH . K 8 HOH C 7 30 30 HOH HOH . K 8 HOH C 8 31 31 HOH HOH . K 8 HOH C 9 41 41 HOH HOH . K 8 HOH C 10 56 56 HOH HOH . K 8 HOH C 11 65 65 HOH HOH . K 8 HOH C 12 67 67 HOH HOH . K 8 HOH C 13 68 68 HOH HOH . K 8 HOH C 14 76 76 HOH HOH . K 8 HOH C 15 78 78 HOH HOH . K 8 HOH C 16 100 100 HOH HOH . K 8 HOH C 17 101 101 HOH HOH . K 8 HOH C 18 105 105 HOH HOH . K 8 HOH C 19 107 107 HOH HOH . K 8 HOH C 20 110 110 HOH HOH . K 8 HOH C 21 116 116 HOH HOH . K 8 HOH C 22 119 119 HOH HOH . K 8 HOH C 23 127 127 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 18.476 _atom_site.Cartn_y -13.554 _atom_site.Cartn_z -14.312 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 64.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #