data_3PO9 # _model_server_result.job_id SzDeKp3JBVqPiVWRnXVdDA _model_server_result.datetime_utc '2024-12-21 16:25:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3po9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 3PO9 # _exptl.entry_id 3PO9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 196.781 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[chloro(dipropyl)-lambda~4~-sulfanyl]propane _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.91 _cell.angle_gamma 90 _cell.entry_id 3PO9 _cell.length_a 93.406 _cell.length_b 61.747 _cell.length_c 118.659 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,I 1 1 B,D,E,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C9 H21 Cl S' _chem_comp.formula_weight 196.781 _chem_comp.id XPT _chem_comp.mon_nstd_flag . _chem_comp.name 1-[chloro(dipropyl)-lambda~4~-sulfanyl]propane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag SN1 CL1 XPT sing 360 n n SN1 C3 XPT sing 361 n n C3 C4 XPT sing 362 n n C3 H3 XPT sing 363 n n C3 H3A XPT sing 364 n n C4 C5 XPT sing 365 n n C4 H4 XPT sing 366 n n C4 H4A XPT sing 367 n n C5 H5 XPT sing 368 n n C5 H5A XPT sing 369 n n C5 H5B XPT sing 370 n n SN1 C6 XPT sing 371 n n C7 C6 XPT sing 372 n n C6 H6 XPT sing 373 n n C6 H6A XPT sing 374 n n C7 C8 XPT sing 375 n n C7 H7 XPT sing 376 n n C7 H7A XPT sing 377 n n C8 H8 XPT sing 378 n n C8 H8A XPT sing 379 n n C8 H8B XPT sing 380 n n C10 C9 XPT sing 381 n n C9 SN1 XPT sing 382 n n C9 H9 XPT sing 383 n n C9 H9A XPT sing 384 n n C11 C10 XPT sing 385 n n C10 H10 XPT sing 386 n n C10 H10A XPT sing 387 n n C11 H11 XPT sing 388 n n C11 H11A XPT sing 389 n n C11 H11B XPT sing 390 n n # _atom_sites.entry_id 3PO9 _atom_sites.fract_transf_matrix[1][1] 0.010706 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002454 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016195 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008646 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XPT A 1 1 1 XPT XPT . D 2 XPT B 1 1 1 XPT XPT . E 3 PGO B 1 478 478 PGO PGO . F 3 PGO B 1 2 2 PGO PGO . G 3 PGO B 1 3 3 PGO PGO . H 3 PGO B 1 4 4 PGO PGO . I 4 HOH A 1 3 3 HOH HOH . I 4 HOH A 2 7 7 HOH HOH . I 4 HOH A 3 8 8 HOH HOH . I 4 HOH A 4 9 9 HOH HOH . I 4 HOH A 5 11 11 HOH HOH . I 4 HOH A 6 12 12 HOH HOH . I 4 HOH A 7 14 14 HOH HOH . I 4 HOH A 8 17 17 HOH HOH . I 4 HOH A 9 20 20 HOH HOH . I 4 HOH A 10 21 21 HOH HOH . I 4 HOH A 11 28 28 HOH HOH . I 4 HOH A 12 32 32 HOH HOH . I 4 HOH A 13 33 33 HOH HOH . I 4 HOH A 14 38 38 HOH HOH . I 4 HOH A 15 40 40 HOH HOH . I 4 HOH A 16 41 41 HOH HOH . I 4 HOH A 17 43 43 HOH HOH . I 4 HOH A 18 44 44 HOH HOH . I 4 HOH A 19 46 46 HOH HOH . I 4 HOH A 20 47 47 HOH HOH . I 4 HOH A 21 56 56 HOH HOH . I 4 HOH A 22 63 63 HOH HOH . I 4 HOH A 23 65 65 HOH HOH . I 4 HOH A 24 67 67 HOH HOH . I 4 HOH A 25 69 69 HOH HOH . I 4 HOH A 26 70 70 HOH HOH . I 4 HOH A 27 72 72 HOH HOH . I 4 HOH A 28 83 83 HOH HOH . I 4 HOH A 29 84 84 HOH HOH . I 4 HOH A 30 88 88 HOH HOH . I 4 HOH A 31 92 92 HOH HOH . I 4 HOH A 32 93 93 HOH HOH . I 4 HOH A 33 103 103 HOH HOH . I 4 HOH A 34 104 104 HOH HOH . I 4 HOH A 35 105 105 HOH HOH . I 4 HOH A 36 106 106 HOH HOH . I 4 HOH A 37 107 107 HOH HOH . I 4 HOH A 38 109 109 HOH HOH . I 4 HOH A 39 110 110 HOH HOH . I 4 HOH A 40 111 111 HOH HOH . I 4 HOH A 41 120 120 HOH HOH . I 4 HOH A 42 127 127 HOH HOH . I 4 HOH A 43 133 133 HOH HOH . I 4 HOH A 44 136 136 HOH HOH . I 4 HOH A 45 140 140 HOH HOH . I 4 HOH A 46 152 152 HOH HOH . I 4 HOH A 47 156 156 HOH HOH . I 4 HOH A 48 159 159 HOH HOH . I 4 HOH A 49 161 161 HOH HOH . I 4 HOH A 50 164 164 HOH HOH . I 4 HOH A 51 167 167 HOH HOH . I 4 HOH A 52 175 175 HOH HOH . I 4 HOH A 53 184 184 HOH HOH . I 4 HOH A 54 186 186 HOH HOH . I 4 HOH A 55 187 187 HOH HOH . I 4 HOH A 56 189 189 HOH HOH . I 4 HOH A 57 190 190 HOH HOH . I 4 HOH A 58 191 191 HOH HOH . I 4 HOH A 59 478 478 HOH HOH . I 4 HOH A 60 479 479 HOH HOH . I 4 HOH A 61 480 480 HOH HOH . I 4 HOH A 62 481 481 HOH HOH . I 4 HOH A 63 482 482 HOH HOH . I 4 HOH A 64 483 483 HOH HOH . I 4 HOH A 65 484 484 HOH HOH . I 4 HOH A 66 485 485 HOH HOH . I 4 HOH A 67 486 486 HOH HOH . I 4 HOH A 68 487 487 HOH HOH . I 4 HOH A 69 488 488 HOH HOH . I 4 HOH A 70 489 489 HOH HOH . I 4 HOH A 71 490 490 HOH HOH . I 4 HOH A 72 491 491 HOH HOH . I 4 HOH A 73 492 492 HOH HOH . I 4 HOH A 74 493 493 HOH HOH . I 4 HOH A 75 494 494 HOH HOH . I 4 HOH A 76 495 495 HOH HOH . I 4 HOH A 77 496 496 HOH HOH . I 4 HOH A 78 497 497 HOH HOH . I 4 HOH A 79 498 498 HOH HOH . I 4 HOH A 80 499 499 HOH HOH . I 4 HOH A 81 500 500 HOH HOH . I 4 HOH A 82 501 501 HOH HOH . I 4 HOH A 83 502 502 HOH HOH . I 4 HOH A 84 503 503 HOH HOH . I 4 HOH A 85 504 504 HOH HOH . I 4 HOH A 86 505 505 HOH HOH . I 4 HOH A 87 506 506 HOH HOH . I 4 HOH A 88 507 507 HOH HOH . I 4 HOH A 89 508 508 HOH HOH . I 4 HOH A 90 509 509 HOH HOH . I 4 HOH A 91 510 510 HOH HOH . I 4 HOH A 92 511 511 HOH HOH . I 4 HOH A 93 512 512 HOH HOH . I 4 HOH A 94 513 513 HOH HOH . I 4 HOH A 95 514 514 HOH HOH . I 4 HOH A 96 515 515 HOH HOH . I 4 HOH A 97 516 516 HOH HOH . I 4 HOH A 98 517 517 HOH HOH . I 4 HOH A 99 518 518 HOH HOH . I 4 HOH A 100 519 519 HOH HOH . I 4 HOH A 101 520 520 HOH HOH . I 4 HOH A 102 523 523 HOH HOH . I 4 HOH A 103 524 524 HOH HOH . I 4 HOH A 104 525 525 HOH HOH . I 4 HOH A 105 526 526 HOH HOH . I 4 HOH A 106 527 527 HOH HOH . I 4 HOH A 107 528 528 HOH HOH . I 4 HOH A 108 529 529 HOH HOH . I 4 HOH A 109 530 530 HOH HOH . I 4 HOH A 110 531 531 HOH HOH . I 4 HOH A 111 532 532 HOH HOH . I 4 HOH A 112 533 533 HOH HOH . I 4 HOH A 113 534 534 HOH HOH . I 4 HOH A 114 535 535 HOH HOH . I 4 HOH A 115 536 536 HOH HOH . I 4 HOH A 116 537 537 HOH HOH . I 4 HOH A 117 538 538 HOH HOH . I 4 HOH A 118 539 539 HOH HOH . J 4 HOH B 1 5 5 HOH HOH . J 4 HOH B 2 10 10 HOH HOH . J 4 HOH B 3 13 13 HOH HOH . J 4 HOH B 4 16 16 HOH HOH . J 4 HOH B 5 18 18 HOH HOH . J 4 HOH B 6 19 19 HOH HOH . J 4 HOH B 7 22 22 HOH HOH . J 4 HOH B 8 24 24 HOH HOH . J 4 HOH B 9 25 25 HOH HOH . J 4 HOH B 10 26 26 HOH HOH . J 4 HOH B 11 29 29 HOH HOH . J 4 HOH B 12 30 30 HOH HOH . J 4 HOH B 13 31 31 HOH HOH . J 4 HOH B 14 34 34 HOH HOH . J 4 HOH B 15 35 35 HOH HOH . J 4 HOH B 16 36 36 HOH HOH . J 4 HOH B 17 45 45 HOH HOH . J 4 HOH B 18 49 49 HOH HOH . J 4 HOH B 19 50 50 HOH HOH . J 4 HOH B 20 52 52 HOH HOH . J 4 HOH B 21 54 54 HOH HOH . J 4 HOH B 22 57 57 HOH HOH . J 4 HOH B 23 58 58 HOH HOH . J 4 HOH B 24 64 64 HOH HOH . J 4 HOH B 25 66 66 HOH HOH . J 4 HOH B 26 68 68 HOH HOH . J 4 HOH B 27 75 75 HOH HOH . J 4 HOH B 28 76 76 HOH HOH . J 4 HOH B 29 79 79 HOH HOH . J 4 HOH B 30 81 81 HOH HOH . J 4 HOH B 31 82 82 HOH HOH . J 4 HOH B 32 86 86 HOH HOH . J 4 HOH B 33 89 89 HOH HOH . J 4 HOH B 34 90 90 HOH HOH . J 4 HOH B 35 94 94 HOH HOH . J 4 HOH B 36 95 95 HOH HOH . J 4 HOH B 37 97 97 HOH HOH . J 4 HOH B 38 98 98 HOH HOH . J 4 HOH B 39 99 99 HOH HOH . J 4 HOH B 40 102 102 HOH HOH . J 4 HOH B 41 112 112 HOH HOH . J 4 HOH B 42 113 113 HOH HOH . J 4 HOH B 43 114 114 HOH HOH . J 4 HOH B 44 121 121 HOH HOH . J 4 HOH B 45 122 122 HOH HOH . J 4 HOH B 46 123 123 HOH HOH . J 4 HOH B 47 124 124 HOH HOH . J 4 HOH B 48 125 125 HOH HOH . J 4 HOH B 49 128 128 HOH HOH . J 4 HOH B 50 129 129 HOH HOH . J 4 HOH B 51 134 134 HOH HOH . J 4 HOH B 52 135 135 HOH HOH . J 4 HOH B 53 137 137 HOH HOH . J 4 HOH B 54 138 138 HOH HOH . J 4 HOH B 55 147 147 HOH HOH . J 4 HOH B 56 148 148 HOH HOH . J 4 HOH B 57 151 151 HOH HOH . J 4 HOH B 58 154 154 HOH HOH . J 4 HOH B 59 157 157 HOH HOH . J 4 HOH B 60 158 158 HOH HOH . J 4 HOH B 61 160 160 HOH HOH . J 4 HOH B 62 163 163 HOH HOH . J 4 HOH B 63 169 169 HOH HOH . J 4 HOH B 64 178 178 HOH HOH . J 4 HOH B 65 182 182 HOH HOH . J 4 HOH B 66 479 479 HOH HOH . J 4 HOH B 67 480 480 HOH HOH . J 4 HOH B 68 481 481 HOH HOH . J 4 HOH B 69 482 482 HOH HOH . J 4 HOH B 70 483 483 HOH HOH . J 4 HOH B 71 484 484 HOH HOH . J 4 HOH B 72 485 485 HOH HOH . J 4 HOH B 73 486 486 HOH HOH . J 4 HOH B 74 487 487 HOH HOH . J 4 HOH B 75 488 488 HOH HOH . J 4 HOH B 76 489 489 HOH HOH . J 4 HOH B 77 490 490 HOH HOH . J 4 HOH B 78 491 491 HOH HOH . J 4 HOH B 79 492 492 HOH HOH . J 4 HOH B 80 493 493 HOH HOH . J 4 HOH B 81 494 494 HOH HOH . J 4 HOH B 82 495 495 HOH HOH . J 4 HOH B 83 496 496 HOH HOH . J 4 HOH B 84 497 497 HOH HOH . J 4 HOH B 85 498 498 HOH HOH . J 4 HOH B 86 499 499 HOH HOH . J 4 HOH B 87 500 500 HOH HOH . J 4 HOH B 88 501 501 HOH HOH . J 4 HOH B 89 502 502 HOH HOH . J 4 HOH B 90 503 503 HOH HOH . J 4 HOH B 91 504 504 HOH HOH . J 4 HOH B 92 505 505 HOH HOH . J 4 HOH B 93 506 506 HOH HOH . J 4 HOH B 94 507 507 HOH HOH . J 4 HOH B 95 508 508 HOH HOH . J 4 HOH B 96 509 509 HOH HOH . J 4 HOH B 97 510 510 HOH HOH . J 4 HOH B 98 511 511 HOH HOH . J 4 HOH B 99 512 512 HOH HOH . J 4 HOH B 100 513 513 HOH HOH . J 4 HOH B 101 514 514 HOH HOH . J 4 HOH B 102 515 515 HOH HOH . J 4 HOH B 103 516 516 HOH HOH . J 4 HOH B 104 517 517 HOH HOH . J 4 HOH B 105 518 518 HOH HOH . J 4 HOH B 106 519 519 HOH HOH . J 4 HOH B 107 520 520 HOH HOH . J 4 HOH B 108 521 521 HOH HOH . J 4 HOH B 109 522 522 HOH HOH . J 4 HOH B 110 523 523 HOH HOH . J 4 HOH B 111 524 524 HOH HOH . J 4 HOH B 112 525 525 HOH HOH . J 4 HOH B 113 526 526 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 XPT . . . D 2 35.799 -6.135 41.955 0.92 46.48 ? C3 XPT 1 B 1 HETATM 2 C C4 XPT . . . D 2 36.045 -6.044 43.455 0.92 37.06 ? C4 XPT 1 B 1 HETATM 3 C C5 XPT . . . D 2 37.107 -7.03 43.877 0.92 41.12 ? C5 XPT 1 B 1 HETATM 4 C C6 XPT . . . D 2 37.842 -3.206 41.526 0.92 44.29 ? C6 XPT 1 B 1 HETATM 5 C C7 XPT . . . D 2 39.321 -2.908 41.312 0.92 47.6 ? C7 XPT 1 B 1 HETATM 6 C C8 XPT . . . D 2 39.707 -1.57 41.917 0.92 43.16 ? C8 XPT 1 B 1 HETATM 7 C C9 XPT . . . D 2 36.593 -5.089 38.843 0.92 47.19 ? C9 XPT 1 B 1 HETATM 8 C C10 XPT . . . D 2 37.719 -4.967 37.826 0.92 40.95 ? C10 XPT 1 B 1 HETATM 9 C C11 XPT . . . D 2 38.293 -3.57 37.815 0.92 43.05 ? C11 XPT 1 B 1 HETATM 10 S SN1 XPT . . . D 2 37.37 -5.178 40.849 0.92 52.97 ? SN1 XPT 1 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 10 #