data_3PP1
#
_model_server_result.job_id            uLr3JSnXD_llItbjNrncQg 
_model_server_result.datetime_utc      '2024-11-07 02:35:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pp1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":400}' 
#
_entry.id    3PP1 
#
_exptl.entry_id    3PP1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3PP1 
_cell.length_a            82.086 
_cell.length_b            82.086 
_cell.length_c            129.254 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PP1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        171 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 135 A ASN 195 1_555 C MG MG . A MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc2 A OD2 ASP 148 A ASP 208 1_555 C MG MG . A MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc3 B O1B ATP . A ATP 400 1_555 C MG MG . A MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
metalc ? metalc4 B O2A ATP . A ATP 400 1_555 C MG MG . A MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc5 B O2G ATP . A ATP 400 1_555 C MG MG . A MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? 
metalc ? metalc6 C MG MG . A MG 410 1_555 F O HOH . A HOH 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 76 n n 
PG O2G ATP sing 77 n n 
PG O3G ATP sing 78 n n 
PG O3B ATP sing 79 n n 
O2G HOG2 ATP sing 80 n n 
O3G HOG3 ATP sing 81 n n 
PB O1B ATP doub 82 n n 
PB O2B ATP sing 83 n n 
PB O3B ATP sing 84 n n 
PB O3A ATP sing 85 n n 
O2B HOB2 ATP sing 86 n n 
PA O1A ATP doub 87 n n 
PA O2A ATP sing 88 n n 
PA O3A ATP sing 89 n n 
PA O5' ATP sing 90 n n 
O2A HOA2 ATP sing 91 n n 
O5' C5' ATP sing 92 n n 
C5' C4' ATP sing 93 n n 
C5' "H5'1" ATP sing 94 n n 
C5' "H5'2" ATP sing 95 n n 
C4' O4' ATP sing 96 n n 
C4' C3' ATP sing 97 n n 
C4' H4' ATP sing 98 n n 
O4' C1' ATP sing 99 n n 
C3' O3' ATP sing 100 n n 
C3' C2' ATP sing 101 n n 
C3' H3' ATP sing 102 n n 
O3' HO3' ATP sing 103 n n 
C2' O2' ATP sing 104 n n 
C2' C1' ATP sing 105 n n 
C2' H2' ATP sing 106 n n 
O2' HO2' ATP sing 107 n n 
C1' N9 ATP sing 108 n n 
C1' H1' ATP sing 109 n n 
N9 C8 ATP sing 110 n y 
N9 C4 ATP sing 111 n y 
C8 N7 ATP doub 112 n y 
C8 H8 ATP sing 113 n n 
N7 C5 ATP sing 114 n y 
C5 C6 ATP sing 115 n y 
C5 C4 ATP doub 116 n y 
C6 N6 ATP sing 117 n n 
C6 N1 ATP doub 118 n y 
N6 HN61 ATP sing 119 n n 
N6 HN62 ATP sing 120 n n 
N1 C2 ATP sing 121 n y 
C2 N3 ATP doub 122 n y 
C2 H2 ATP sing 123 n n 
N3 C4 ATP sing 124 n y 
#
_atom_sites.entry_id                     3PP1 
_atom_sites.fract_transf_matrix[1][1]    0.012182 
_atom_sites.fract_transf_matrix[1][2]    0.007033 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014067 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007737 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ATP A 1 400 400 ATP ATP . 
C 3 MG A 1 410 410 MG MG . 
D 4 IZG A 1 500 500 IZG IZG . 
E 5 ACT A 1 590 590 ACT ACT . 
F 6 HOH A 1 600 600 HOH HOH . 
F 6 HOH A 2 601 601 HOH HOH . 
F 6 HOH A 3 602 602 HOH HOH . 
F 6 HOH A 4 603 603 HOH HOH . 
F 6 HOH A 5 604 604 HOH HOH . 
F 6 HOH A 6 605 605 HOH HOH . 
F 6 HOH A 7 606 606 HOH HOH . 
F 6 HOH A 8 607 607 HOH HOH . 
F 6 HOH A 9 608 608 HOH HOH . 
F 6 HOH A 10 609 609 HOH HOH . 
F 6 HOH A 11 610 610 HOH HOH . 
F 6 HOH A 12 611 611 HOH HOH . 
F 6 HOH A 13 612 612 HOH HOH . 
F 6 HOH A 14 613 613 HOH HOH . 
F 6 HOH A 15 614 614 HOH HOH . 
F 6 HOH A 16 615 615 HOH HOH . 
F 6 HOH A 17 616 616 HOH HOH . 
F 6 HOH A 18 617 617 HOH HOH . 
F 6 HOH A 19 618 618 HOH HOH . 
F 6 HOH A 20 619 619 HOH HOH . 
F 6 HOH A 21 620 620 HOH HOH . 
F 6 HOH A 22 621 621 HOH HOH . 
F 6 HOH A 23 622 622 HOH HOH . 
F 6 HOH A 24 623 623 HOH HOH . 
F 6 HOH A 25 624 624 HOH HOH . 
F 6 HOH A 26 625 625 HOH HOH . 
F 6 HOH A 27 626 626 HOH HOH . 
F 6 HOH A 28 627 627 HOH HOH . 
F 6 HOH A 29 628 628 HOH HOH . 
F 6 HOH A 30 629 629 HOH HOH . 
F 6 HOH A 31 630 630 HOH HOH . 
F 6 HOH A 32 631 631 HOH HOH . 
F 6 HOH A 33 633 633 HOH HOH . 
F 6 HOH A 34 634 634 HOH HOH . 
F 6 HOH A 35 635 635 HOH HOH . 
F 6 HOH A 36 636 636 HOH HOH . 
F 6 HOH A 37 637 637 HOH HOH . 
F 6 HOH A 38 638 638 HOH HOH . 
F 6 HOH A 39 639 639 HOH HOH . 
F 6 HOH A 40 640 640 HOH HOH . 
F 6 HOH A 41 641 641 HOH HOH . 
F 6 HOH A 42 642 642 HOH HOH . 
F 6 HOH A 43 643 643 HOH HOH . 
F 6 HOH A 44 644 644 HOH HOH . 
F 6 HOH A 45 645 645 HOH HOH . 
F 6 HOH A 46 647 647 HOH HOH . 
F 6 HOH A 47 648 648 HOH HOH . 
F 6 HOH A 48 649 649 HOH HOH . 
F 6 HOH A 49 650 650 HOH HOH . 
F 6 HOH A 50 651 651 HOH HOH . 
F 6 HOH A 51 652 652 HOH HOH . 
F 6 HOH A 52 653 653 HOH HOH . 
F 6 HOH A 53 654 654 HOH HOH . 
F 6 HOH A 54 655 655 HOH HOH . 
F 6 HOH A 55 656 656 HOH HOH . 
F 6 HOH A 56 657 657 HOH HOH . 
F 6 HOH A 57 658 658 HOH HOH . 
F 6 HOH A 58 659 659 HOH HOH . 
F 6 HOH A 59 660 660 HOH HOH . 
F 6 HOH A 60 661 661 HOH HOH . 
F 6 HOH A 61 662 662 HOH HOH . 
F 6 HOH A 62 664 664 HOH HOH . 
F 6 HOH A 63 665 665 HOH HOH . 
F 6 HOH A 64 666 666 HOH HOH . 
F 6 HOH A 65 667 667 HOH HOH . 
F 6 HOH A 66 668 668 HOH HOH . 
F 6 HOH A 67 669 669 HOH HOH . 
F 6 HOH A 68 670 670 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . B 2 -24.316 28.002 2.632 1 63.65 ? PG ATP 400 A 1 
HETATM 2 O O1G ATP . . . B 2 -23.564 28.373 1.368 1 63.92 ? O1G ATP 400 A 1 
HETATM 3 O O2G ATP . . . B 2 -25.818 27.755 2.453 1 63.17 ? O2G ATP 400 A 1 
HETATM 4 O O3G ATP . . . B 2 -23.955 28.89 3.804 1 64.56 ? O3G ATP 400 A 1 
HETATM 5 P PB ATP . . . B 2 -24.284 25.665 4.219 1 43.41 ? PB ATP 400 A 1 
HETATM 6 O O1B ATP . . . B 2 -25.629 25.021 3.951 1 42.79 ? O1B ATP 400 A 1 
HETATM 7 O O2B ATP . . . B 2 -23.103 24.823 4.648 1 43.85 ? O2B ATP 400 A 1 
HETATM 8 O O3B ATP . . . B 2 -23.728 26.544 2.998 1 52.16 ? O3B ATP 400 A 1 
HETATM 9 P PA ATP . . . B 2 -25.534 26.673 6.581 1 41.74 ? PA ATP 400 A 1 
HETATM 10 O O1A ATP . . . B 2 -25.209 27.926 7.36 1 42.04 ? O1A ATP 400 A 1 
HETATM 11 O O2A ATP . . . B 2 -26.952 26.392 6.138 1 39.92 ? O2A ATP 400 A 1 
HETATM 12 O O3A ATP . . . B 2 -24.564 26.803 5.308 1 43.89 ? O3A ATP 400 A 1 
HETATM 13 O O5' ATP . . . B 2 -25.08 25.353 7.369 1 39.56 ? O5' ATP 400 A 1 
HETATM 14 C C5' ATP . . . B 2 -23.79 25.191 7.919 1 43.95 ? C5' ATP 400 A 1 
HETATM 15 C C4' ATP . . . B 2 -23.634 23.713 8.263 1 48.89 ? C4' ATP 400 A 1 
HETATM 16 O O4' ATP . . . B 2 -24.427 23.373 9.407 1 48.49 ? O4' ATP 400 A 1 
HETATM 17 C C3' ATP . . . B 2 -24.084 22.778 7.147 1 49.18 ? C3' ATP 400 A 1 
HETATM 18 O O3' ATP . . . B 2 -22.956 22.286 6.407 1 54.09 ? O3' ATP 400 A 1 
HETATM 19 C C2' ATP . . . B 2 -24.733 21.604 7.838 1 47.57 ? C2' ATP 400 A 1 
HETATM 20 O O2' ATP . . . B 2 -23.785 20.539 7.858 1 52.04 ? O2' ATP 400 A 1 
HETATM 21 C C1' ATP . . . B 2 -24.921 22.045 9.27 1 46.67 ? C1' ATP 400 A 1 
HETATM 22 N N9 ATP . . . B 2 -26.353 22.021 9.589 1 43.38 ? N9 ATP 400 A 1 
HETATM 23 C C8 ATP . . . B 2 -27.234 22.933 9.165 1 43.07 ? C8 ATP 400 A 1 
HETATM 24 N N7 ATP . . . B 2 -28.467 22.626 9.633 1 43.75 ? N7 ATP 400 A 1 
HETATM 25 C C5 ATP . . . B 2 -28.375 21.499 10.372 1 40.9 ? C5 ATP 400 A 1 
HETATM 26 C C6 ATP . . . B 2 -29.304 20.639 11.149 1 40.64 ? C6 ATP 400 A 1 
HETATM 27 N N6 ATP . . . B 2 -30.617 20.959 11.22 1 37.6 ? N6 ATP 400 A 1 
HETATM 28 N N1 ATP . . . B 2 -28.803 19.537 11.777 1 41.05 ? N1 ATP 400 A 1 
HETATM 29 C C2 ATP . . . B 2 -27.499 19.216 11.705 1 39.86 ? C2 ATP 400 A 1 
HETATM 30 N N3 ATP . . . B 2 -26.613 19.962 11.014 1 43.78 ? N3 ATP 400 A 1 
HETATM 31 C C4 ATP . . . B 2 -26.973 21.097 10.339 1 42.67 ? C4 ATP 400 A 1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#