data_3PP1 # _model_server_result.job_id evR-BCB9YXXasEC_GmYp7A _model_server_result.datetime_utc '2024-12-07 14:24:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pp1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":410}' # _entry.id 3PP1 # _exptl.entry_id 3PP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PP1 _cell.length_a 82.086 _cell.length_b 82.086 _cell.length_c 129.254 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 135 A ASN 195 1_555 C MG MG . A MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc2 A OD2 ASP 148 A ASP 208 1_555 C MG MG . A MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc3 B O1B ATP . A ATP 400 1_555 C MG MG . A MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc4 B O2A ATP . A ATP 400 1_555 C MG MG . A MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc5 B O2G ATP . A ATP 400 1_555 C MG MG . A MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc6 C MG MG . A MG 410 1_555 F O HOH . A HOH 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3PP1 _atom_sites.fract_transf_matrix[1][1] 0.012182 _atom_sites.fract_transf_matrix[1][2] 0.007033 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 400 400 ATP ATP . C 3 MG A 1 410 410 MG MG . D 4 IZG A 1 500 500 IZG IZG . E 5 ACT A 1 590 590 ACT ACT . F 6 HOH A 1 600 600 HOH HOH . F 6 HOH A 2 601 601 HOH HOH . F 6 HOH A 3 602 602 HOH HOH . F 6 HOH A 4 603 603 HOH HOH . F 6 HOH A 5 604 604 HOH HOH . F 6 HOH A 6 605 605 HOH HOH . F 6 HOH A 7 606 606 HOH HOH . F 6 HOH A 8 607 607 HOH HOH . F 6 HOH A 9 608 608 HOH HOH . F 6 HOH A 10 609 609 HOH HOH . F 6 HOH A 11 610 610 HOH HOH . F 6 HOH A 12 611 611 HOH HOH . F 6 HOH A 13 612 612 HOH HOH . F 6 HOH A 14 613 613 HOH HOH . F 6 HOH A 15 614 614 HOH HOH . F 6 HOH A 16 615 615 HOH HOH . F 6 HOH A 17 616 616 HOH HOH . F 6 HOH A 18 617 617 HOH HOH . F 6 HOH A 19 618 618 HOH HOH . F 6 HOH A 20 619 619 HOH HOH . F 6 HOH A 21 620 620 HOH HOH . F 6 HOH A 22 621 621 HOH HOH . F 6 HOH A 23 622 622 HOH HOH . F 6 HOH A 24 623 623 HOH HOH . F 6 HOH A 25 624 624 HOH HOH . F 6 HOH A 26 625 625 HOH HOH . F 6 HOH A 27 626 626 HOH HOH . F 6 HOH A 28 627 627 HOH HOH . F 6 HOH A 29 628 628 HOH HOH . F 6 HOH A 30 629 629 HOH HOH . F 6 HOH A 31 630 630 HOH HOH . F 6 HOH A 32 631 631 HOH HOH . F 6 HOH A 33 633 633 HOH HOH . F 6 HOH A 34 634 634 HOH HOH . F 6 HOH A 35 635 635 HOH HOH . F 6 HOH A 36 636 636 HOH HOH . F 6 HOH A 37 637 637 HOH HOH . F 6 HOH A 38 638 638 HOH HOH . F 6 HOH A 39 639 639 HOH HOH . F 6 HOH A 40 640 640 HOH HOH . F 6 HOH A 41 641 641 HOH HOH . F 6 HOH A 42 642 642 HOH HOH . F 6 HOH A 43 643 643 HOH HOH . F 6 HOH A 44 644 644 HOH HOH . F 6 HOH A 45 645 645 HOH HOH . F 6 HOH A 46 647 647 HOH HOH . F 6 HOH A 47 648 648 HOH HOH . F 6 HOH A 48 649 649 HOH HOH . F 6 HOH A 49 650 650 HOH HOH . F 6 HOH A 50 651 651 HOH HOH . F 6 HOH A 51 652 652 HOH HOH . F 6 HOH A 52 653 653 HOH HOH . F 6 HOH A 53 654 654 HOH HOH . F 6 HOH A 54 655 655 HOH HOH . F 6 HOH A 55 656 656 HOH HOH . F 6 HOH A 56 657 657 HOH HOH . F 6 HOH A 57 658 658 HOH HOH . F 6 HOH A 58 659 659 HOH HOH . F 6 HOH A 59 660 660 HOH HOH . F 6 HOH A 60 661 661 HOH HOH . F 6 HOH A 61 662 662 HOH HOH . F 6 HOH A 62 664 664 HOH HOH . F 6 HOH A 63 665 665 HOH HOH . F 6 HOH A 64 666 666 HOH HOH . F 6 HOH A 65 667 667 HOH HOH . F 6 HOH A 66 668 668 HOH HOH . F 6 HOH A 67 669 669 HOH HOH . F 6 HOH A 68 670 670 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -27.318 _atom_site.Cartn_y 25.975 _atom_site.Cartn_z 4.073 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 410 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #