data_3PP1 # _model_server_result.job_id bE_QyFBQdKGACS2I5GNHpw _model_server_result.datetime_utc '2024-11-26 12:43:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pp1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 3PP1 # _exptl.entry_id 3PP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 504.227 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(2R)-2,3-dihydroxypropyl]-6-fluoro-5-[(2-fluoro-4-iodophenyl)amino]-8-methylpyrido[2,3-d]pyrimidine-4,7(3H,8H)-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PP1 _cell.length_a 82.086 _cell.length_b 82.086 _cell.length_c 129.254 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 135 A ASN 195 1_555 C MG MG . A MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc2 A OD2 ASP 148 A ASP 208 1_555 C MG MG . A MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc3 B O1B ATP . A ATP 400 1_555 C MG MG . A MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc4 B O2A ATP . A ATP 400 1_555 C MG MG . A MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc5 B O2G ATP . A ATP 400 1_555 C MG MG . A MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc6 C MG MG . A MG 410 1_555 F O HOH . A HOH 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? # _chem_comp.formula 'C17 H15 F2 I N4 O4' _chem_comp.formula_weight 504.227 _chem_comp.id IZG _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(2R)-2,3-dihydroxypropyl]-6-fluoro-5-[(2-fluoro-4-iodophenyl)amino]-8-methylpyrido[2,3-d]pyrimidine-4,7(3H,8H)-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 IZG sing 228 n n C1 H1 IZG sing 229 n n C1 H1A IZG sing 230 n n C1 H1B IZG sing 231 n n N2 C3 IZG sing 232 n n N2 C28 IZG sing 233 n n N4 C3 IZG sing 234 n n C3 C15 IZG doub 235 n n N4 C5 IZG doub 236 n n C5 N6 IZG sing 237 n n C5 H5 IZG sing 238 n n N6 C7 IZG sing 239 n n N6 C13 IZG sing 240 n n C7 C8 IZG sing 241 n n C7 H7 IZG sing 242 n n C7 H7A IZG sing 243 n n C11 C8 IZG sing 244 n n C8 O10 IZG sing 245 n n C8 H8 IZG sing 246 n n O10 HO10 IZG sing 247 n n C11 O12 IZG sing 248 n n C11 H11 IZG sing 249 n n C11 H11A IZG sing 250 n n O12 HO12 IZG sing 251 n n C15 C13 IZG sing 252 n n C13 O14 IZG doub 253 n n C15 C16 IZG sing 254 n n C26 C16 IZG doub 255 n n C16 N17 IZG sing 256 n n N17 C18 IZG sing 257 n n N17 HN17 IZG sing 258 n n C19 C18 IZG doub 259 n y C18 C24 IZG sing 260 n y C19 C20 IZG sing 261 n y C19 H19 IZG sing 262 n n C20 C21 IZG doub 263 n y C20 H20 IZG sing 264 n n C21 I22 IZG sing 265 n n C21 C23 IZG sing 266 n y C24 C23 IZG doub 267 n y C23 H23 IZG sing 268 n n C24 F25 IZG sing 269 n n C28 C26 IZG sing 270 n n C26 F27 IZG sing 271 n n O29 C28 IZG doub 272 n n # _atom_sites.entry_id 3PP1 _atom_sites.fract_transf_matrix[1][1] 0.012182 _atom_sites.fract_transf_matrix[1][2] 0.007033 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 400 400 ATP ATP . C 3 MG A 1 410 410 MG MG . D 4 IZG A 1 500 500 IZG IZG . E 5 ACT A 1 590 590 ACT ACT . F 6 HOH A 1 600 600 HOH HOH . F 6 HOH A 2 601 601 HOH HOH . F 6 HOH A 3 602 602 HOH HOH . F 6 HOH A 4 603 603 HOH HOH . F 6 HOH A 5 604 604 HOH HOH . F 6 HOH A 6 605 605 HOH HOH . F 6 HOH A 7 606 606 HOH HOH . F 6 HOH A 8 607 607 HOH HOH . F 6 HOH A 9 608 608 HOH HOH . F 6 HOH A 10 609 609 HOH HOH . F 6 HOH A 11 610 610 HOH HOH . F 6 HOH A 12 611 611 HOH HOH . F 6 HOH A 13 612 612 HOH HOH . F 6 HOH A 14 613 613 HOH HOH . F 6 HOH A 15 614 614 HOH HOH . F 6 HOH A 16 615 615 HOH HOH . F 6 HOH A 17 616 616 HOH HOH . F 6 HOH A 18 617 617 HOH HOH . F 6 HOH A 19 618 618 HOH HOH . F 6 HOH A 20 619 619 HOH HOH . F 6 HOH A 21 620 620 HOH HOH . F 6 HOH A 22 621 621 HOH HOH . F 6 HOH A 23 622 622 HOH HOH . F 6 HOH A 24 623 623 HOH HOH . F 6 HOH A 25 624 624 HOH HOH . F 6 HOH A 26 625 625 HOH HOH . F 6 HOH A 27 626 626 HOH HOH . F 6 HOH A 28 627 627 HOH HOH . F 6 HOH A 29 628 628 HOH HOH . F 6 HOH A 30 629 629 HOH HOH . F 6 HOH A 31 630 630 HOH HOH . F 6 HOH A 32 631 631 HOH HOH . F 6 HOH A 33 633 633 HOH HOH . F 6 HOH A 34 634 634 HOH HOH . F 6 HOH A 35 635 635 HOH HOH . F 6 HOH A 36 636 636 HOH HOH . F 6 HOH A 37 637 637 HOH HOH . F 6 HOH A 38 638 638 HOH HOH . F 6 HOH A 39 639 639 HOH HOH . F 6 HOH A 40 640 640 HOH HOH . F 6 HOH A 41 641 641 HOH HOH . F 6 HOH A 42 642 642 HOH HOH . F 6 HOH A 43 643 643 HOH HOH . F 6 HOH A 44 644 644 HOH HOH . F 6 HOH A 45 645 645 HOH HOH . F 6 HOH A 46 647 647 HOH HOH . F 6 HOH A 47 648 648 HOH HOH . F 6 HOH A 48 649 649 HOH HOH . F 6 HOH A 49 650 650 HOH HOH . F 6 HOH A 50 651 651 HOH HOH . F 6 HOH A 51 652 652 HOH HOH . F 6 HOH A 52 653 653 HOH HOH . F 6 HOH A 53 654 654 HOH HOH . F 6 HOH A 54 655 655 HOH HOH . F 6 HOH A 55 656 656 HOH HOH . F 6 HOH A 56 657 657 HOH HOH . F 6 HOH A 57 658 658 HOH HOH . F 6 HOH A 58 659 659 HOH HOH . F 6 HOH A 59 660 660 HOH HOH . F 6 HOH A 60 661 661 HOH HOH . F 6 HOH A 61 662 662 HOH HOH . F 6 HOH A 62 664 664 HOH HOH . F 6 HOH A 63 665 665 HOH HOH . F 6 HOH A 64 666 666 HOH HOH . F 6 HOH A 65 667 667 HOH HOH . F 6 HOH A 66 668 668 HOH HOH . F 6 HOH A 67 669 669 HOH HOH . F 6 HOH A 68 670 670 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IZG . . . D 4 -34.643 33.018 2.736 1 49.41 ? C1 IZG 500 A 1 HETATM 2 N N2 IZG . . . D 4 -34.337 32.016 3.749 1 50.57 ? N2 IZG 500 A 1 HETATM 3 C C3 IZG . . . D 4 -33.041 31.559 3.887 1 53.53 ? C3 IZG 500 A 1 HETATM 4 N N4 IZG . . . D 4 -32.034 32.01 3.098 1 58.16 ? N4 IZG 500 A 1 HETATM 5 C C5 IZG . . . D 4 -30.791 31.569 3.225 1 61.59 ? C5 IZG 500 A 1 HETATM 6 N N6 IZG . . . D 4 -30.421 30.628 4.153 1 61.81 ? N6 IZG 500 A 1 HETATM 7 C C7 IZG . . . D 4 -29.019 30.145 4.203 1 64.48 ? C7 IZG 500 A 1 HETATM 8 C C8 IZG . . . D 4 -27.994 31.064 4.88 1 69.81 ? C8 IZG 500 A 1 HETATM 9 O O10 IZG . . . D 4 -28.379 31.346 6.232 1 71.47 ? O10 IZG 500 A 1 HETATM 10 C C11 IZG . . . D 4 -26.618 30.361 4.842 1 72.6 ? C11 IZG 500 A 1 HETATM 11 O O12 IZG . . . D 4 -26.08 30.046 6.143 1 71.34 ? O12 IZG 500 A 1 HETATM 12 C C13 IZG . . . D 4 -31.384 30.114 4.999 1 56.77 ? C13 IZG 500 A 1 HETATM 13 O O14 IZG . . . D 4 -31.099 29.272 5.842 1 55.59 ? O14 IZG 500 A 1 HETATM 14 C C15 IZG . . . D 4 -32.734 30.587 4.874 1 52 ? C15 IZG 500 A 1 HETATM 15 C C16 IZG . . . D 4 -33.818 30.094 5.725 1 47.88 ? C16 IZG 500 A 1 HETATM 16 N N17 IZG . . . D 4 -33.541 29.14 6.691 1 44.35 ? N17 IZG 500 A 1 HETATM 17 C C18 IZG . . . D 4 -34.261 27.98 7.004 1 41.24 ? C18 IZG 500 A 1 HETATM 18 C C19 IZG . . . D 4 -35.398 27.568 6.306 1 42.36 ? C19 IZG 500 A 1 HETATM 19 C C20 IZG . . . D 4 -36.07 26.4 6.669 1 45.59 ? C20 IZG 500 A 1 HETATM 20 C C21 IZG . . . D 4 -35.64 25.619 7.749 1 46.46 ? C21 IZG 500 A 1 HETATM 21 I I22 IZG . . . D 4 -36.686 23.852 8.304 1 52.72 ? I22 IZG 500 A 1 HETATM 22 C C23 IZG . . . D 4 -34.502 26.043 8.445 1 43.86 ? C23 IZG 500 A 1 HETATM 23 C C24 IZG . . . D 4 -33.811 27.207 8.081 1 41.82 ? C24 IZG 500 A 1 HETATM 24 F F25 IZG . . . D 4 -32.711 27.59 8.778 1 35.69 ? F25 IZG 500 A 1 HETATM 25 C C26 IZG . . . D 4 -35.093 30.619 5.527 1 48.57 ? C26 IZG 500 A 1 HETATM 26 F F27 IZG . . . D 4 -36.124 30.209 6.286 1 50.29 ? F27 IZG 500 A 1 HETATM 27 C C28 IZG . . . D 4 -35.338 31.574 4.535 1 49.34 ? C28 IZG 500 A 1 HETATM 28 O O29 IZG . . . D 4 -36.487 31.993 4.394 1 48.08 ? O29 IZG 500 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #