data_3PP1
#
_model_server_result.job_id            Y81_D24L3A-v-su8HfoVlw 
_model_server_result.datetime_utc      '2024-11-07 02:40:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pp1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":500}' 
#
_entry.id    3PP1 
#
_exptl.entry_id    3PP1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              504.227 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-[(2R)-2,3-dihydroxypropyl]-6-fluoro-5-[(2-fluoro-4-iodophenyl)amino]-8-methylpyrido[2,3-d]pyrimidine-4,7(3H,8H)-dione 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3PP1 
_cell.length_a            82.086 
_cell.length_b            82.086 
_cell.length_c            129.254 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PP1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        171 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 135 A ASN 195 1_555 C MG MG . A MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc2 A OD2 ASP 148 A ASP 208 1_555 C MG MG . A MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc3 B O1B ATP . A ATP 400 1_555 C MG MG . A MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
metalc ? metalc4 B O2A ATP . A ATP 400 1_555 C MG MG . A MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc5 B O2G ATP . A ATP 400 1_555 C MG MG . A MG 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? 
metalc ? metalc6 C MG MG . A MG 410 1_555 F O HOH . A HOH 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
#
_chem_comp.formula           'C17 H15 F2 I N4 O4' 
_chem_comp.formula_weight    504.227 
_chem_comp.id                IZG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-[(2R)-2,3-dihydroxypropyl]-6-fluoro-5-[(2-fluoro-4-iodophenyl)amino]-8-methylpyrido[2,3-d]pyrimidine-4,7(3H,8H)-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N2 IZG sing 228 n n 
C1 H1 IZG sing 229 n n 
C1 H1A IZG sing 230 n n 
C1 H1B IZG sing 231 n n 
N2 C3 IZG sing 232 n n 
N2 C28 IZG sing 233 n n 
N4 C3 IZG sing 234 n n 
C3 C15 IZG doub 235 n n 
N4 C5 IZG doub 236 n n 
C5 N6 IZG sing 237 n n 
C5 H5 IZG sing 238 n n 
N6 C7 IZG sing 239 n n 
N6 C13 IZG sing 240 n n 
C7 C8 IZG sing 241 n n 
C7 H7 IZG sing 242 n n 
C7 H7A IZG sing 243 n n 
C11 C8 IZG sing 244 n n 
C8 O10 IZG sing 245 n n 
C8 H8 IZG sing 246 n n 
O10 HO10 IZG sing 247 n n 
C11 O12 IZG sing 248 n n 
C11 H11 IZG sing 249 n n 
C11 H11A IZG sing 250 n n 
O12 HO12 IZG sing 251 n n 
C15 C13 IZG sing 252 n n 
C13 O14 IZG doub 253 n n 
C15 C16 IZG sing 254 n n 
C26 C16 IZG doub 255 n n 
C16 N17 IZG sing 256 n n 
N17 C18 IZG sing 257 n n 
N17 HN17 IZG sing 258 n n 
C19 C18 IZG doub 259 n y 
C18 C24 IZG sing 260 n y 
C19 C20 IZG sing 261 n y 
C19 H19 IZG sing 262 n n 
C20 C21 IZG doub 263 n y 
C20 H20 IZG sing 264 n n 
C21 I22 IZG sing 265 n n 
C21 C23 IZG sing 266 n y 
C24 C23 IZG doub 267 n y 
C23 H23 IZG sing 268 n n 
C24 F25 IZG sing 269 n n 
C28 C26 IZG sing 270 n n 
C26 F27 IZG sing 271 n n 
O29 C28 IZG doub 272 n n 
#
_atom_sites.entry_id                     3PP1 
_atom_sites.fract_transf_matrix[1][1]    0.012182 
_atom_sites.fract_transf_matrix[1][2]    0.007033 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014067 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007737 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ATP A 1 400 400 ATP ATP . 
C 3 MG A 1 410 410 MG MG . 
D 4 IZG A 1 500 500 IZG IZG . 
E 5 ACT A 1 590 590 ACT ACT . 
F 6 HOH A 1 600 600 HOH HOH . 
F 6 HOH A 2 601 601 HOH HOH . 
F 6 HOH A 3 602 602 HOH HOH . 
F 6 HOH A 4 603 603 HOH HOH . 
F 6 HOH A 5 604 604 HOH HOH . 
F 6 HOH A 6 605 605 HOH HOH . 
F 6 HOH A 7 606 606 HOH HOH . 
F 6 HOH A 8 607 607 HOH HOH . 
F 6 HOH A 9 608 608 HOH HOH . 
F 6 HOH A 10 609 609 HOH HOH . 
F 6 HOH A 11 610 610 HOH HOH . 
F 6 HOH A 12 611 611 HOH HOH . 
F 6 HOH A 13 612 612 HOH HOH . 
F 6 HOH A 14 613 613 HOH HOH . 
F 6 HOH A 15 614 614 HOH HOH . 
F 6 HOH A 16 615 615 HOH HOH . 
F 6 HOH A 17 616 616 HOH HOH . 
F 6 HOH A 18 617 617 HOH HOH . 
F 6 HOH A 19 618 618 HOH HOH . 
F 6 HOH A 20 619 619 HOH HOH . 
F 6 HOH A 21 620 620 HOH HOH . 
F 6 HOH A 22 621 621 HOH HOH . 
F 6 HOH A 23 622 622 HOH HOH . 
F 6 HOH A 24 623 623 HOH HOH . 
F 6 HOH A 25 624 624 HOH HOH . 
F 6 HOH A 26 625 625 HOH HOH . 
F 6 HOH A 27 626 626 HOH HOH . 
F 6 HOH A 28 627 627 HOH HOH . 
F 6 HOH A 29 628 628 HOH HOH . 
F 6 HOH A 30 629 629 HOH HOH . 
F 6 HOH A 31 630 630 HOH HOH . 
F 6 HOH A 32 631 631 HOH HOH . 
F 6 HOH A 33 633 633 HOH HOH . 
F 6 HOH A 34 634 634 HOH HOH . 
F 6 HOH A 35 635 635 HOH HOH . 
F 6 HOH A 36 636 636 HOH HOH . 
F 6 HOH A 37 637 637 HOH HOH . 
F 6 HOH A 38 638 638 HOH HOH . 
F 6 HOH A 39 639 639 HOH HOH . 
F 6 HOH A 40 640 640 HOH HOH . 
F 6 HOH A 41 641 641 HOH HOH . 
F 6 HOH A 42 642 642 HOH HOH . 
F 6 HOH A 43 643 643 HOH HOH . 
F 6 HOH A 44 644 644 HOH HOH . 
F 6 HOH A 45 645 645 HOH HOH . 
F 6 HOH A 46 647 647 HOH HOH . 
F 6 HOH A 47 648 648 HOH HOH . 
F 6 HOH A 48 649 649 HOH HOH . 
F 6 HOH A 49 650 650 HOH HOH . 
F 6 HOH A 50 651 651 HOH HOH . 
F 6 HOH A 51 652 652 HOH HOH . 
F 6 HOH A 52 653 653 HOH HOH . 
F 6 HOH A 53 654 654 HOH HOH . 
F 6 HOH A 54 655 655 HOH HOH . 
F 6 HOH A 55 656 656 HOH HOH . 
F 6 HOH A 56 657 657 HOH HOH . 
F 6 HOH A 57 658 658 HOH HOH . 
F 6 HOH A 58 659 659 HOH HOH . 
F 6 HOH A 59 660 660 HOH HOH . 
F 6 HOH A 60 661 661 HOH HOH . 
F 6 HOH A 61 662 662 HOH HOH . 
F 6 HOH A 62 664 664 HOH HOH . 
F 6 HOH A 63 665 665 HOH HOH . 
F 6 HOH A 64 666 666 HOH HOH . 
F 6 HOH A 65 667 667 HOH HOH . 
F 6 HOH A 66 668 668 HOH HOH . 
F 6 HOH A 67 669 669 HOH HOH . 
F 6 HOH A 68 670 670 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 IZG . . . D 4 -34.643 33.018 2.736 1 49.41 ? C1 IZG 500 A 1 
HETATM 2 N N2 IZG . . . D 4 -34.337 32.016 3.749 1 50.57 ? N2 IZG 500 A 1 
HETATM 3 C C3 IZG . . . D 4 -33.041 31.559 3.887 1 53.53 ? C3 IZG 500 A 1 
HETATM 4 N N4 IZG . . . D 4 -32.034 32.01 3.098 1 58.16 ? N4 IZG 500 A 1 
HETATM 5 C C5 IZG . . . D 4 -30.791 31.569 3.225 1 61.59 ? C5 IZG 500 A 1 
HETATM 6 N N6 IZG . . . D 4 -30.421 30.628 4.153 1 61.81 ? N6 IZG 500 A 1 
HETATM 7 C C7 IZG . . . D 4 -29.019 30.145 4.203 1 64.48 ? C7 IZG 500 A 1 
HETATM 8 C C8 IZG . . . D 4 -27.994 31.064 4.88 1 69.81 ? C8 IZG 500 A 1 
HETATM 9 O O10 IZG . . . D 4 -28.379 31.346 6.232 1 71.47 ? O10 IZG 500 A 1 
HETATM 10 C C11 IZG . . . D 4 -26.618 30.361 4.842 1 72.6 ? C11 IZG 500 A 1 
HETATM 11 O O12 IZG . . . D 4 -26.08 30.046 6.143 1 71.34 ? O12 IZG 500 A 1 
HETATM 12 C C13 IZG . . . D 4 -31.384 30.114 4.999 1 56.77 ? C13 IZG 500 A 1 
HETATM 13 O O14 IZG . . . D 4 -31.099 29.272 5.842 1 55.59 ? O14 IZG 500 A 1 
HETATM 14 C C15 IZG . . . D 4 -32.734 30.587 4.874 1 52 ? C15 IZG 500 A 1 
HETATM 15 C C16 IZG . . . D 4 -33.818 30.094 5.725 1 47.88 ? C16 IZG 500 A 1 
HETATM 16 N N17 IZG . . . D 4 -33.541 29.14 6.691 1 44.35 ? N17 IZG 500 A 1 
HETATM 17 C C18 IZG . . . D 4 -34.261 27.98 7.004 1 41.24 ? C18 IZG 500 A 1 
HETATM 18 C C19 IZG . . . D 4 -35.398 27.568 6.306 1 42.36 ? C19 IZG 500 A 1 
HETATM 19 C C20 IZG . . . D 4 -36.07 26.4 6.669 1 45.59 ? C20 IZG 500 A 1 
HETATM 20 C C21 IZG . . . D 4 -35.64 25.619 7.749 1 46.46 ? C21 IZG 500 A 1 
HETATM 21 I I22 IZG . . . D 4 -36.686 23.852 8.304 1 52.72 ? I22 IZG 500 A 1 
HETATM 22 C C23 IZG . . . D 4 -34.502 26.043 8.445 1 43.86 ? C23 IZG 500 A 1 
HETATM 23 C C24 IZG . . . D 4 -33.811 27.207 8.081 1 41.82 ? C24 IZG 500 A 1 
HETATM 24 F F25 IZG . . . D 4 -32.711 27.59 8.778 1 35.69 ? F25 IZG 500 A 1 
HETATM 25 C C26 IZG . . . D 4 -35.093 30.619 5.527 1 48.57 ? C26 IZG 500 A 1 
HETATM 26 F F27 IZG . . . D 4 -36.124 30.209 6.286 1 50.29 ? F27 IZG 500 A 1 
HETATM 27 C C28 IZG . . . D 4 -35.338 31.574 4.535 1 49.34 ? C28 IZG 500 A 1 
HETATM 28 O O29 IZG . . . D 4 -36.487 31.993 4.394 1 48.08 ? O29 IZG 500 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           28 
#