data_3PPB
#
_model_server_result.job_id            TQfLj43zLlstb5tbrYBdVg 
_model_server_result.datetime_utc      '2024-12-26 23:30:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ppb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":210}' 
#
_entry.id    3PPB 
#
_exptl.entry_id    3PPB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3PPB 
_cell.length_a            57.762 
_cell.length_b            60.042 
_cell.length_c            107.734 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PPB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 97 A ALA 96 1_555 A N MSE 98 A MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale2 A C MSE 98 A MSE 97 1_555 A N ALA 99 A ALA 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale3 A C SER 111 A SER 110 1_555 A N MSE 112 A MSE 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 A C MSE 112 A MSE 111 1_555 A N SER 113 A SER 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale5 A C ALA 124 A ALA 123 1_555 A N MSE 125 A MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale6 A C MSE 125 A MSE 124 1_555 A N HIS 126 A HIS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale7 A C LEU 152 A LEU 151 1_555 A N MSE 153 A MSE 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale8 A C MSE 153 A MSE 152 1_555 A N GLN 154 A GLN 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? 
covale ? covale9 A C ALA 191 A ALA 190 1_555 A N MSE 192 A MSE 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
covale ? covale10 A C MSE 192 A MSE 191 1_555 A N ALA 193 A ALA 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
covale ? covale11 B C ALA 97 B ALA 96 1_555 B N MSE 98 B MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale12 B C MSE 98 B MSE 97 1_555 B N ALA 99 B ALA 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale13 B C SER 111 B SER 110 1_555 B N MSE 112 B MSE 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale14 B C MSE 112 B MSE 111 1_555 B N SER 113 B SER 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale15 B C ALA 124 B ALA 123 1_555 B N MSE 125 B MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale16 B C MSE 125 B MSE 124 1_555 B N HIS 126 B HIS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale17 B C LEU 152 B LEU 151 1_555 B N MSE 153 B MSE 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale18 B C MSE 153 B MSE 152 1_555 B N GLN 154 B GLN 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale19 B C ALA 191 B ALA 190 1_555 B N MSE 192 B MSE 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale20 B C MSE 192 B MSE 191 1_555 B N ALA 193 B ALA 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     3PPB 
_atom_sites.fract_transf_matrix[1][1]    0.017312 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016655 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009282 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CL A 1 201 201 CL CL . 
D 3 EDO A 1 203 203 EDO EDO . 
E 3 EDO A 1 206 206 EDO EDO . 
F 3 EDO A 1 209 209 EDO EDO . 
G 3 EDO A 1 210 210 EDO EDO . 
H 3 EDO A 1 211 211 EDO EDO . 
I 3 EDO A 1 212 212 EDO EDO . 
J 4 PEG A 1 215 215 PEG PEG . 
K 5 PG4 A 1 216 216 PG4 PG4 . 
L 5 PG4 A 1 218 218 PG4 PG4 . 
M 2 CL B 1 202 202 CL CL . 
N 3 EDO B 1 204 204 EDO EDO . 
O 3 EDO B 1 205 205 EDO EDO . 
P 3 EDO B 1 207 207 EDO EDO . 
Q 3 EDO B 1 208 208 EDO EDO . 
R 4 PEG B 1 213 213 PEG PEG . 
S 4 PEG B 1 214 214 PEG PEG . 
T 5 PG4 B 1 217 217 PG4 PG4 . 
U 6 HOH A 1 219 219 HOH HOH . 
U 6 HOH A 2 220 220 HOH HOH . 
U 6 HOH A 3 221 221 HOH HOH . 
U 6 HOH A 4 222 222 HOH HOH . 
U 6 HOH A 5 223 223 HOH HOH . 
U 6 HOH A 6 224 224 HOH HOH . 
U 6 HOH A 7 225 225 HOH HOH . 
U 6 HOH A 8 226 226 HOH HOH . 
U 6 HOH A 9 227 227 HOH HOH . 
U 6 HOH A 10 228 228 HOH HOH . 
U 6 HOH A 11 231 231 HOH HOH . 
U 6 HOH A 12 232 232 HOH HOH . 
U 6 HOH A 13 233 233 HOH HOH . 
U 6 HOH A 14 234 234 HOH HOH . 
U 6 HOH A 15 235 235 HOH HOH . 
U 6 HOH A 16 241 241 HOH HOH . 
U 6 HOH A 17 242 242 HOH HOH . 
U 6 HOH A 18 250 250 HOH HOH . 
U 6 HOH A 19 257 257 HOH HOH . 
U 6 HOH A 20 261 261 HOH HOH . 
U 6 HOH A 21 262 262 HOH HOH . 
U 6 HOH A 22 265 265 HOH HOH . 
U 6 HOH A 23 266 266 HOH HOH . 
U 6 HOH A 24 267 267 HOH HOH . 
U 6 HOH A 25 268 268 HOH HOH . 
U 6 HOH A 26 270 270 HOH HOH . 
U 6 HOH A 27 271 271 HOH HOH . 
U 6 HOH A 28 272 272 HOH HOH . 
U 6 HOH A 29 273 273 HOH HOH . 
U 6 HOH A 30 274 274 HOH HOH . 
U 6 HOH A 31 275 275 HOH HOH . 
U 6 HOH A 32 277 277 HOH HOH . 
U 6 HOH A 33 278 278 HOH HOH . 
U 6 HOH A 34 279 279 HOH HOH . 
U 6 HOH A 35 280 280 HOH HOH . 
U 6 HOH A 36 281 281 HOH HOH . 
U 6 HOH A 37 282 282 HOH HOH . 
U 6 HOH A 38 284 284 HOH HOH . 
U 6 HOH A 39 285 285 HOH HOH . 
U 6 HOH A 40 287 287 HOH HOH . 
U 6 HOH A 41 288 288 HOH HOH . 
U 6 HOH A 42 289 289 HOH HOH . 
U 6 HOH A 43 302 302 HOH HOH . 
U 6 HOH A 44 306 306 HOH HOH . 
U 6 HOH A 45 312 312 HOH HOH . 
U 6 HOH A 46 320 320 HOH HOH . 
U 6 HOH A 47 321 321 HOH HOH . 
U 6 HOH A 48 322 322 HOH HOH . 
U 6 HOH A 49 323 323 HOH HOH . 
U 6 HOH A 50 324 324 HOH HOH . 
U 6 HOH A 51 325 325 HOH HOH . 
U 6 HOH A 52 326 326 HOH HOH . 
U 6 HOH A 53 332 332 HOH HOH . 
U 6 HOH A 54 333 333 HOH HOH . 
U 6 HOH A 55 335 335 HOH HOH . 
U 6 HOH A 56 338 338 HOH HOH . 
U 6 HOH A 57 339 339 HOH HOH . 
U 6 HOH A 58 342 342 HOH HOH . 
V 6 HOH B 1 229 229 HOH HOH . 
V 6 HOH B 2 230 230 HOH HOH . 
V 6 HOH B 3 236 236 HOH HOH . 
V 6 HOH B 4 237 237 HOH HOH . 
V 6 HOH B 5 238 238 HOH HOH . 
V 6 HOH B 6 239 239 HOH HOH . 
V 6 HOH B 7 240 240 HOH HOH . 
V 6 HOH B 8 243 243 HOH HOH . 
V 6 HOH B 9 244 244 HOH HOH . 
V 6 HOH B 10 245 245 HOH HOH . 
V 6 HOH B 11 246 246 HOH HOH . 
V 6 HOH B 12 247 247 HOH HOH . 
V 6 HOH B 13 248 248 HOH HOH . 
V 6 HOH B 14 249 249 HOH HOH . 
V 6 HOH B 15 251 251 HOH HOH . 
V 6 HOH B 16 252 252 HOH HOH . 
V 6 HOH B 17 253 253 HOH HOH . 
V 6 HOH B 18 254 254 HOH HOH . 
V 6 HOH B 19 255 255 HOH HOH . 
V 6 HOH B 20 256 256 HOH HOH . 
V 6 HOH B 21 258 258 HOH HOH . 
V 6 HOH B 22 259 259 HOH HOH . 
V 6 HOH B 23 260 260 HOH HOH . 
V 6 HOH B 24 263 263 HOH HOH . 
V 6 HOH B 25 264 264 HOH HOH . 
V 6 HOH B 26 269 269 HOH HOH . 
V 6 HOH B 27 276 276 HOH HOH . 
V 6 HOH B 28 283 283 HOH HOH . 
V 6 HOH B 29 286 286 HOH HOH . 
V 6 HOH B 30 290 290 HOH HOH . 
V 6 HOH B 31 291 291 HOH HOH . 
V 6 HOH B 32 292 292 HOH HOH . 
V 6 HOH B 33 293 293 HOH HOH . 
V 6 HOH B 34 294 294 HOH HOH . 
V 6 HOH B 35 295 295 HOH HOH . 
V 6 HOH B 36 296 296 HOH HOH . 
V 6 HOH B 37 297 297 HOH HOH . 
V 6 HOH B 38 298 298 HOH HOH . 
V 6 HOH B 39 299 299 HOH HOH . 
V 6 HOH B 40 300 300 HOH HOH . 
V 6 HOH B 41 301 301 HOH HOH . 
V 6 HOH B 42 303 303 HOH HOH . 
V 6 HOH B 43 304 304 HOH HOH . 
V 6 HOH B 44 305 305 HOH HOH . 
V 6 HOH B 45 307 307 HOH HOH . 
V 6 HOH B 46 308 308 HOH HOH . 
V 6 HOH B 47 309 309 HOH HOH . 
V 6 HOH B 48 310 310 HOH HOH . 
V 6 HOH B 49 311 311 HOH HOH . 
V 6 HOH B 50 313 313 HOH HOH . 
V 6 HOH B 51 314 314 HOH HOH . 
V 6 HOH B 52 315 315 HOH HOH . 
V 6 HOH B 53 316 316 HOH HOH . 
V 6 HOH B 54 317 317 HOH HOH . 
V 6 HOH B 55 318 318 HOH HOH . 
V 6 HOH B 56 319 319 HOH HOH . 
V 6 HOH B 57 327 327 HOH HOH . 
V 6 HOH B 58 328 328 HOH HOH . 
V 6 HOH B 59 329 329 HOH HOH . 
V 6 HOH B 60 330 330 HOH HOH . 
V 6 HOH B 61 331 331 HOH HOH . 
V 6 HOH B 62 334 334 HOH HOH . 
V 6 HOH B 63 336 336 HOH HOH . 
V 6 HOH B 64 337 337 HOH HOH . 
V 6 HOH B 65 340 340 HOH HOH . 
V 6 HOH B 66 341 341 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 3 42.21 6.596 55.548 1 59.31 ? C1 EDO 210 A 1 
HETATM 2 O O1 EDO . . . G 3 41.203 5.679 55.094 1 60.35 ? O1 EDO 210 A 1 
HETATM 3 C C2 EDO . . . G 3 43.157 5.861 56.494 1 58.45 ? C2 EDO 210 A 1 
HETATM 4 O O2 EDO . . . G 3 44.098 6.787 57.057 1 66.14 ? O2 EDO 210 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#