data_3PPR # _model_server_result.job_id 3lyC6u-YvXoF370cTj2uHQ _model_server_result.datetime_utc '2024-11-13 19:54:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ppr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 3PPR # _exptl.entry_id 3PPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4S)-2-METHYL-1,4,5,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PPR _cell.length_a 61.965 _cell.length_b 92.575 _cell.length_c 115.812 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H10 N2 O2' _chem_comp.formula_weight 142.156 _chem_comp.id 4CS _chem_comp.mon_nstd_flag . _chem_comp.name '(4S)-2-METHYL-1,4,5,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ECTOINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C 4CS doub 1 n n C OXT 4CS sing 2 n n C CA 4CS sing 3 n n OXT HOXT 4CS sing 4 n n CA CB 4CS sing 5 n n CA N 4CS sing 6 n n CA HA 4CS sing 7 n n CB CAD 4CS sing 8 n n CB HB1 4CS sing 9 n n CB HB2 4CS sing 10 n n CAD NAG 4CS sing 11 n n CAD HAD1 4CS sing 12 n n CAD HAD2 4CS sing 13 n n NAG CAI 4CS sing 14 n n NAG HNAG 4CS sing 15 n n CAI CAA 4CS sing 16 n n CAI N 4CS doub 17 n n CAA HAA1 4CS sing 18 n n CAA HAA2 4CS sing 19 n n CAA HAA3 4CS sing 20 n n # _atom_sites.entry_id 3PPR _atom_sites.fract_transf_matrix[1][1] 0.016138 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010802 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008635 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4CS A 1 401 401 4CS 4CS . D 2 4CS B 1 401 401 4CS 4CS . E 3 HOH A 1 304 304 HOH HOH . E 3 HOH A 2 305 305 HOH HOH . E 3 HOH A 3 306 306 HOH HOH . E 3 HOH A 4 307 307 HOH HOH . E 3 HOH A 5 308 308 HOH HOH . E 3 HOH A 6 309 309 HOH HOH . E 3 HOH A 7 310 310 HOH HOH . E 3 HOH A 8 311 311 HOH HOH . E 3 HOH A 9 312 312 HOH HOH . E 3 HOH A 10 313 313 HOH HOH . E 3 HOH A 11 314 314 HOH HOH . E 3 HOH A 12 315 315 HOH HOH . E 3 HOH A 13 316 316 HOH HOH . E 3 HOH A 14 317 317 HOH HOH . E 3 HOH A 15 318 318 HOH HOH . E 3 HOH A 16 319 319 HOH HOH . E 3 HOH A 17 320 320 HOH HOH . E 3 HOH A 18 321 321 HOH HOH . E 3 HOH A 19 322 322 HOH HOH . E 3 HOH A 20 323 323 HOH HOH . E 3 HOH A 21 324 324 HOH HOH . E 3 HOH A 22 325 325 HOH HOH . E 3 HOH A 23 326 326 HOH HOH . E 3 HOH A 24 327 327 HOH HOH . E 3 HOH A 25 328 328 HOH HOH . E 3 HOH A 26 329 329 HOH HOH . E 3 HOH A 27 330 330 HOH HOH . E 3 HOH A 28 331 331 HOH HOH . E 3 HOH A 29 332 332 HOH HOH . E 3 HOH A 30 333 333 HOH HOH . E 3 HOH A 31 334 334 HOH HOH . E 3 HOH A 32 335 335 HOH HOH . E 3 HOH A 33 336 336 HOH HOH . E 3 HOH A 34 337 337 HOH HOH . E 3 HOH A 35 338 338 HOH HOH . E 3 HOH A 36 339 339 HOH HOH . E 3 HOH A 37 340 340 HOH HOH . E 3 HOH A 38 341 341 HOH HOH . E 3 HOH A 39 342 342 HOH HOH . E 3 HOH A 40 343 343 HOH HOH . E 3 HOH A 41 344 344 HOH HOH . E 3 HOH A 42 345 345 HOH HOH . E 3 HOH A 43 346 346 HOH HOH . E 3 HOH A 44 347 347 HOH HOH . E 3 HOH A 45 348 348 HOH HOH . E 3 HOH A 46 349 349 HOH HOH . E 3 HOH A 47 350 350 HOH HOH . E 3 HOH A 48 351 351 HOH HOH . E 3 HOH A 49 352 352 HOH HOH . E 3 HOH A 50 353 353 HOH HOH . E 3 HOH A 51 354 354 HOH HOH . E 3 HOH A 52 355 355 HOH HOH . E 3 HOH A 53 356 356 HOH HOH . E 3 HOH A 54 357 357 HOH HOH . E 3 HOH A 55 358 358 HOH HOH . E 3 HOH A 56 359 359 HOH HOH . E 3 HOH A 57 360 360 HOH HOH . E 3 HOH A 58 361 361 HOH HOH . E 3 HOH A 59 362 362 HOH HOH . E 3 HOH A 60 363 363 HOH HOH . E 3 HOH A 61 364 364 HOH HOH . E 3 HOH A 62 365 365 HOH HOH . E 3 HOH A 63 366 366 HOH HOH . E 3 HOH A 64 367 367 HOH HOH . E 3 HOH A 65 368 368 HOH HOH . E 3 HOH A 66 369 369 HOH HOH . E 3 HOH A 67 370 370 HOH HOH . E 3 HOH A 68 371 371 HOH HOH . E 3 HOH A 69 372 372 HOH HOH . E 3 HOH A 70 373 373 HOH HOH . E 3 HOH A 71 374 374 HOH HOH . E 3 HOH A 72 375 375 HOH HOH . E 3 HOH A 73 376 376 HOH HOH . E 3 HOH A 74 377 377 HOH HOH . E 3 HOH A 75 378 378 HOH HOH . E 3 HOH A 76 379 379 HOH HOH . E 3 HOH A 77 380 380 HOH HOH . E 3 HOH A 78 381 381 HOH HOH . E 3 HOH A 79 382 382 HOH HOH . E 3 HOH A 80 383 383 HOH HOH . E 3 HOH A 81 384 384 HOH HOH . E 3 HOH A 82 385 385 HOH HOH . E 3 HOH A 83 386 386 HOH HOH . E 3 HOH A 84 387 387 HOH HOH . E 3 HOH A 85 388 388 HOH HOH . E 3 HOH A 86 389 389 HOH HOH . F 3 HOH B 1 304 304 HOH HOH . F 3 HOH B 2 305 305 HOH HOH . F 3 HOH B 3 306 306 HOH HOH . F 3 HOH B 4 307 307 HOH HOH . F 3 HOH B 5 308 308 HOH HOH . F 3 HOH B 6 309 309 HOH HOH . F 3 HOH B 7 310 310 HOH HOH . F 3 HOH B 8 311 311 HOH HOH . F 3 HOH B 9 312 312 HOH HOH . F 3 HOH B 10 313 313 HOH HOH . F 3 HOH B 11 314 314 HOH HOH . F 3 HOH B 12 315 315 HOH HOH . F 3 HOH B 13 316 316 HOH HOH . F 3 HOH B 14 317 317 HOH HOH . F 3 HOH B 15 318 318 HOH HOH . F 3 HOH B 16 319 319 HOH HOH . F 3 HOH B 17 320 320 HOH HOH . F 3 HOH B 18 321 321 HOH HOH . F 3 HOH B 19 322 322 HOH HOH . F 3 HOH B 20 323 323 HOH HOH . F 3 HOH B 21 324 324 HOH HOH . F 3 HOH B 22 325 325 HOH HOH . F 3 HOH B 23 326 326 HOH HOH . F 3 HOH B 24 327 327 HOH HOH . F 3 HOH B 25 328 328 HOH HOH . F 3 HOH B 26 329 329 HOH HOH . F 3 HOH B 27 330 330 HOH HOH . F 3 HOH B 28 331 331 HOH HOH . F 3 HOH B 29 332 332 HOH HOH . F 3 HOH B 30 333 333 HOH HOH . F 3 HOH B 31 334 334 HOH HOH . F 3 HOH B 32 335 335 HOH HOH . F 3 HOH B 33 336 336 HOH HOH . F 3 HOH B 34 337 337 HOH HOH . F 3 HOH B 35 338 338 HOH HOH . F 3 HOH B 36 339 339 HOH HOH . F 3 HOH B 37 340 340 HOH HOH . F 3 HOH B 38 341 341 HOH HOH . F 3 HOH B 39 342 342 HOH HOH . F 3 HOH B 40 343 343 HOH HOH . F 3 HOH B 41 344 344 HOH HOH . F 3 HOH B 42 345 345 HOH HOH . F 3 HOH B 43 346 346 HOH HOH . F 3 HOH B 44 347 347 HOH HOH . F 3 HOH B 45 348 348 HOH HOH . F 3 HOH B 46 349 349 HOH HOH . F 3 HOH B 47 350 350 HOH HOH . F 3 HOH B 48 351 351 HOH HOH . F 3 HOH B 49 352 352 HOH HOH . F 3 HOH B 50 353 353 HOH HOH . F 3 HOH B 51 354 354 HOH HOH . F 3 HOH B 52 355 355 HOH HOH . F 3 HOH B 53 356 356 HOH HOH . F 3 HOH B 54 357 357 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O 4CS . . . C 2 31.712 12.804 9.975 1 24.24 ? O 4CS 401 A 1 HETATM 2 C C 4CS . . . C 2 32.583 13.239 9.387 1 21.57 ? C 4CS 401 A 1 HETATM 3 O OXT 4CS . . . C 2 33.778 12.664 9.421 1 23.06 ? OXT 4CS 401 A 1 HETATM 4 C CA 4CS . . . C 2 32.522 14.67 8.87 1 20.8 ? CA 4CS 401 A 1 HETATM 5 C CB 4CS . . . C 2 33.787 15.383 9.265 1 20.45 ? CB 4CS 401 A 1 HETATM 6 C CAD 4CS . . . C 2 33.755 16.829 8.88 1 21.39 ? CAD 4CS 401 A 1 HETATM 7 N NAG 4CS . . . C 2 32.478 17.43 9.148 1 18.14 ? NAG 4CS 401 A 1 HETATM 8 C CAI 4CS . . . C 2 31.398 16.685 9.67 1 19.84 ? CAI 4CS 401 A 1 HETATM 9 C CAA 4CS . . . C 2 30.191 17.377 10.275 1 19.22 ? CAA 4CS 401 A 1 HETATM 10 N N 4CS . . . C 2 31.344 15.288 9.397 1 17.59 ? N 4CS 401 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #