data_3PPR
#
_model_server_result.job_id            3P1iUYsR_RCMpDv1JTrT6Q 
_model_server_result.datetime_utc      '2024-11-27 22:29:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ppr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    3PPR 
#
_exptl.entry_id    3PPR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              142.156 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(4S)-2-METHYL-1,4,5,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3PPR 
_cell.length_a            61.965 
_cell.length_b            92.575 
_cell.length_c            115.812 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PPR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C6 H10 N2 O2' 
_chem_comp.formula_weight    142.156 
_chem_comp.id                4CS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(4S)-2-METHYL-1,4,5,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ECTOINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C 4CS doub 1 n n 
C OXT 4CS sing 2 n n 
C CA 4CS sing 3 n n 
OXT HOXT 4CS sing 4 n n 
CA CB 4CS sing 5 n n 
CA N 4CS sing 6 n n 
CA HA 4CS sing 7 n n 
CB CAD 4CS sing 8 n n 
CB HB1 4CS sing 9 n n 
CB HB2 4CS sing 10 n n 
CAD NAG 4CS sing 11 n n 
CAD HAD1 4CS sing 12 n n 
CAD HAD2 4CS sing 13 n n 
NAG CAI 4CS sing 14 n n 
NAG HNAG 4CS sing 15 n n 
CAI CAA 4CS sing 16 n n 
CAI N 4CS doub 17 n n 
CAA HAA1 4CS sing 18 n n 
CAA HAA2 4CS sing 19 n n 
CAA HAA3 4CS sing 20 n n 
#
_atom_sites.entry_id                     3PPR 
_atom_sites.fract_transf_matrix[1][1]    0.016138 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010802 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008635 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 4CS A 1 401 401 4CS 4CS . 
D 2 4CS B 1 401 401 4CS 4CS . 
E 3 HOH A 1 304 304 HOH HOH . 
E 3 HOH A 2 305 305 HOH HOH . 
E 3 HOH A 3 306 306 HOH HOH . 
E 3 HOH A 4 307 307 HOH HOH . 
E 3 HOH A 5 308 308 HOH HOH . 
E 3 HOH A 6 309 309 HOH HOH . 
E 3 HOH A 7 310 310 HOH HOH . 
E 3 HOH A 8 311 311 HOH HOH . 
E 3 HOH A 9 312 312 HOH HOH . 
E 3 HOH A 10 313 313 HOH HOH . 
E 3 HOH A 11 314 314 HOH HOH . 
E 3 HOH A 12 315 315 HOH HOH . 
E 3 HOH A 13 316 316 HOH HOH . 
E 3 HOH A 14 317 317 HOH HOH . 
E 3 HOH A 15 318 318 HOH HOH . 
E 3 HOH A 16 319 319 HOH HOH . 
E 3 HOH A 17 320 320 HOH HOH . 
E 3 HOH A 18 321 321 HOH HOH . 
E 3 HOH A 19 322 322 HOH HOH . 
E 3 HOH A 20 323 323 HOH HOH . 
E 3 HOH A 21 324 324 HOH HOH . 
E 3 HOH A 22 325 325 HOH HOH . 
E 3 HOH A 23 326 326 HOH HOH . 
E 3 HOH A 24 327 327 HOH HOH . 
E 3 HOH A 25 328 328 HOH HOH . 
E 3 HOH A 26 329 329 HOH HOH . 
E 3 HOH A 27 330 330 HOH HOH . 
E 3 HOH A 28 331 331 HOH HOH . 
E 3 HOH A 29 332 332 HOH HOH . 
E 3 HOH A 30 333 333 HOH HOH . 
E 3 HOH A 31 334 334 HOH HOH . 
E 3 HOH A 32 335 335 HOH HOH . 
E 3 HOH A 33 336 336 HOH HOH . 
E 3 HOH A 34 337 337 HOH HOH . 
E 3 HOH A 35 338 338 HOH HOH . 
E 3 HOH A 36 339 339 HOH HOH . 
E 3 HOH A 37 340 340 HOH HOH . 
E 3 HOH A 38 341 341 HOH HOH . 
E 3 HOH A 39 342 342 HOH HOH . 
E 3 HOH A 40 343 343 HOH HOH . 
E 3 HOH A 41 344 344 HOH HOH . 
E 3 HOH A 42 345 345 HOH HOH . 
E 3 HOH A 43 346 346 HOH HOH . 
E 3 HOH A 44 347 347 HOH HOH . 
E 3 HOH A 45 348 348 HOH HOH . 
E 3 HOH A 46 349 349 HOH HOH . 
E 3 HOH A 47 350 350 HOH HOH . 
E 3 HOH A 48 351 351 HOH HOH . 
E 3 HOH A 49 352 352 HOH HOH . 
E 3 HOH A 50 353 353 HOH HOH . 
E 3 HOH A 51 354 354 HOH HOH . 
E 3 HOH A 52 355 355 HOH HOH . 
E 3 HOH A 53 356 356 HOH HOH . 
E 3 HOH A 54 357 357 HOH HOH . 
E 3 HOH A 55 358 358 HOH HOH . 
E 3 HOH A 56 359 359 HOH HOH . 
E 3 HOH A 57 360 360 HOH HOH . 
E 3 HOH A 58 361 361 HOH HOH . 
E 3 HOH A 59 362 362 HOH HOH . 
E 3 HOH A 60 363 363 HOH HOH . 
E 3 HOH A 61 364 364 HOH HOH . 
E 3 HOH A 62 365 365 HOH HOH . 
E 3 HOH A 63 366 366 HOH HOH . 
E 3 HOH A 64 367 367 HOH HOH . 
E 3 HOH A 65 368 368 HOH HOH . 
E 3 HOH A 66 369 369 HOH HOH . 
E 3 HOH A 67 370 370 HOH HOH . 
E 3 HOH A 68 371 371 HOH HOH . 
E 3 HOH A 69 372 372 HOH HOH . 
E 3 HOH A 70 373 373 HOH HOH . 
E 3 HOH A 71 374 374 HOH HOH . 
E 3 HOH A 72 375 375 HOH HOH . 
E 3 HOH A 73 376 376 HOH HOH . 
E 3 HOH A 74 377 377 HOH HOH . 
E 3 HOH A 75 378 378 HOH HOH . 
E 3 HOH A 76 379 379 HOH HOH . 
E 3 HOH A 77 380 380 HOH HOH . 
E 3 HOH A 78 381 381 HOH HOH . 
E 3 HOH A 79 382 382 HOH HOH . 
E 3 HOH A 80 383 383 HOH HOH . 
E 3 HOH A 81 384 384 HOH HOH . 
E 3 HOH A 82 385 385 HOH HOH . 
E 3 HOH A 83 386 386 HOH HOH . 
E 3 HOH A 84 387 387 HOH HOH . 
E 3 HOH A 85 388 388 HOH HOH . 
E 3 HOH A 86 389 389 HOH HOH . 
F 3 HOH B 1 304 304 HOH HOH . 
F 3 HOH B 2 305 305 HOH HOH . 
F 3 HOH B 3 306 306 HOH HOH . 
F 3 HOH B 4 307 307 HOH HOH . 
F 3 HOH B 5 308 308 HOH HOH . 
F 3 HOH B 6 309 309 HOH HOH . 
F 3 HOH B 7 310 310 HOH HOH . 
F 3 HOH B 8 311 311 HOH HOH . 
F 3 HOH B 9 312 312 HOH HOH . 
F 3 HOH B 10 313 313 HOH HOH . 
F 3 HOH B 11 314 314 HOH HOH . 
F 3 HOH B 12 315 315 HOH HOH . 
F 3 HOH B 13 316 316 HOH HOH . 
F 3 HOH B 14 317 317 HOH HOH . 
F 3 HOH B 15 318 318 HOH HOH . 
F 3 HOH B 16 319 319 HOH HOH . 
F 3 HOH B 17 320 320 HOH HOH . 
F 3 HOH B 18 321 321 HOH HOH . 
F 3 HOH B 19 322 322 HOH HOH . 
F 3 HOH B 20 323 323 HOH HOH . 
F 3 HOH B 21 324 324 HOH HOH . 
F 3 HOH B 22 325 325 HOH HOH . 
F 3 HOH B 23 326 326 HOH HOH . 
F 3 HOH B 24 327 327 HOH HOH . 
F 3 HOH B 25 328 328 HOH HOH . 
F 3 HOH B 26 329 329 HOH HOH . 
F 3 HOH B 27 330 330 HOH HOH . 
F 3 HOH B 28 331 331 HOH HOH . 
F 3 HOH B 29 332 332 HOH HOH . 
F 3 HOH B 30 333 333 HOH HOH . 
F 3 HOH B 31 334 334 HOH HOH . 
F 3 HOH B 32 335 335 HOH HOH . 
F 3 HOH B 33 336 336 HOH HOH . 
F 3 HOH B 34 337 337 HOH HOH . 
F 3 HOH B 35 338 338 HOH HOH . 
F 3 HOH B 36 339 339 HOH HOH . 
F 3 HOH B 37 340 340 HOH HOH . 
F 3 HOH B 38 341 341 HOH HOH . 
F 3 HOH B 39 342 342 HOH HOH . 
F 3 HOH B 40 343 343 HOH HOH . 
F 3 HOH B 41 344 344 HOH HOH . 
F 3 HOH B 42 345 345 HOH HOH . 
F 3 HOH B 43 346 346 HOH HOH . 
F 3 HOH B 44 347 347 HOH HOH . 
F 3 HOH B 45 348 348 HOH HOH . 
F 3 HOH B 46 349 349 HOH HOH . 
F 3 HOH B 47 350 350 HOH HOH . 
F 3 HOH B 48 351 351 HOH HOH . 
F 3 HOH B 49 352 352 HOH HOH . 
F 3 HOH B 50 353 353 HOH HOH . 
F 3 HOH B 51 354 354 HOH HOH . 
F 3 HOH B 52 355 355 HOH HOH . 
F 3 HOH B 53 356 356 HOH HOH . 
F 3 HOH B 54 357 357 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O 4CS . . . D 2 17.329 39.615 31.001 1 26.6 ? O 4CS 401 B 1 
HETATM 2 C C 4CS . . . D 2 16.207 39.594 30.765 1 24.18 ? C 4CS 401 B 1 
HETATM 3 O OXT 4CS . . . D 2 15.349 39.859 31.759 1 25.44 ? OXT 4CS 401 B 1 
HETATM 4 C CA 4CS . . . D 2 15.705 39.428 29.317 1 22.76 ? CA 4CS 401 B 1 
HETATM 5 C CB 4CS . . . D 2 14.486 38.534 29.308 1 22.98 ? CB 4CS 401 B 1 
HETATM 6 C CAD 4CS . . . D 2 14.041 38.085 27.932 1 22.04 ? CAD 4CS 401 B 1 
HETATM 7 N NAG 4CS . . . D 2 15.129 37.976 26.994 1 20.15 ? NAG 4CS 401 B 1 
HETATM 8 C CAI 4CS . . . D 2 16.478 38.102 27.395 1 21.38 ? CAI 4CS 401 B 1 
HETATM 9 C CAA 4CS . . . D 2 17.572 37.779 26.424 1 20.72 ? CAA 4CS 401 B 1 
HETATM 10 N N 4CS . . . D 2 16.79 38.89 28.533 1 21.09 ? N 4CS 401 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#