data_3PQD
#
_model_server_result.job_id            XBKVgYm6vnjNac21FgqB-Q 
_model_server_result.datetime_utc      '2024-12-21 13:17:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pqd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":327}' 
#
_entry.id    3PQD 
#
_exptl.entry_id    3PQD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3PQD 
_cell.length_a            171.041 
_cell.length_b            171.041 
_cell.length_c            96.272 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PQD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,N,O,P,Q 1 1 
E,F,G,H,L,M,R,S,T,U 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 271 n n 
PA O2A NAD sing 272 n n 
PA O5B NAD sing 273 n n 
PA O3 NAD sing 274 n n 
O2A HOA2 NAD sing 275 n n 
O5B C5B NAD sing 276 n n 
C5B C4B NAD sing 277 n n 
C5B H51A NAD sing 278 n n 
C5B H52A NAD sing 279 n n 
C4B O4B NAD sing 280 n n 
C4B C3B NAD sing 281 n n 
C4B H4B NAD sing 282 n n 
O4B C1B NAD sing 283 n n 
C3B O3B NAD sing 284 n n 
C3B C2B NAD sing 285 n n 
C3B H3B NAD sing 286 n n 
O3B HO3A NAD sing 287 n n 
C2B O2B NAD sing 288 n n 
C2B C1B NAD sing 289 n n 
C2B H2B NAD sing 290 n n 
O2B HO2A NAD sing 291 n n 
C1B N9A NAD sing 292 n n 
C1B H1B NAD sing 293 n n 
N9A C8A NAD sing 294 n y 
N9A C4A NAD sing 295 n y 
C8A N7A NAD doub 296 n y 
C8A H8A NAD sing 297 n n 
N7A C5A NAD sing 298 n y 
C5A C6A NAD sing 299 n y 
C5A C4A NAD doub 300 n y 
C6A N6A NAD sing 301 n n 
C6A N1A NAD doub 302 n y 
N6A H61A NAD sing 303 n n 
N6A H62A NAD sing 304 n n 
N1A C2A NAD sing 305 n y 
C2A N3A NAD doub 306 n y 
C2A H2A NAD sing 307 n n 
N3A C4A NAD sing 308 n y 
O3 PN NAD sing 309 n n 
PN O1N NAD doub 310 n n 
PN O2N NAD sing 311 n n 
PN O5D NAD sing 312 n n 
O5D C5D NAD sing 313 n n 
C5D C4D NAD sing 314 n n 
C5D H51N NAD sing 315 n n 
C5D H52N NAD sing 316 n n 
C4D O4D NAD sing 317 n n 
C4D C3D NAD sing 318 n n 
C4D H4D NAD sing 319 n n 
O4D C1D NAD sing 320 n n 
C3D O3D NAD sing 321 n n 
C3D C2D NAD sing 322 n n 
C3D H3D NAD sing 323 n n 
O3D HO3N NAD sing 324 n n 
C2D O2D NAD sing 325 n n 
C2D C1D NAD sing 326 n n 
C2D H2D NAD sing 327 n n 
O2D HO2N NAD sing 328 n n 
C1D N1N NAD sing 329 n n 
C1D H1D NAD sing 330 n n 
N1N C2N NAD sing 331 n y 
N1N C6N NAD doub 332 n y 
C2N C3N NAD doub 333 n y 
C2N H2N NAD sing 334 n n 
C3N C7N NAD sing 335 n n 
C3N C4N NAD sing 336 n y 
C7N O7N NAD doub 337 n n 
C7N N7N NAD sing 338 n n 
N7N H71N NAD sing 339 n n 
N7N H72N NAD sing 340 n n 
C4N C5N NAD doub 341 n y 
C4N H4N NAD sing 342 n n 
C5N C6N NAD sing 343 n y 
C5N H5N NAD sing 344 n n 
C6N H6N NAD sing 345 n n 
#
_atom_sites.entry_id                     3PQD 
_atom_sites.fract_transf_matrix[1][1]    0.005847 
_atom_sites.fract_transf_matrix[1][2]    0.003376 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006751 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010387 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 FBP C 1 327 1 FBP FBP . 
J 3 NAD D 1 327 1 NAD NAD . 
K 2 FBP D 1 328 1 FBP FBP . 
L 2 FBP F 1 327 1 FBP FBP . 
M 2 FBP G 1 327 1 FBP FBP . 
N 4 HOH A 1 327 3 HOH HOH . 
N 4 HOH A 2 328 11 HOH HOH . 
N 4 HOH A 3 329 22 HOH HOH . 
N 4 HOH A 4 330 30 HOH HOH . 
N 4 HOH A 5 331 33 HOH HOH . 
N 4 HOH A 6 332 40 HOH HOH . 
N 4 HOH A 7 333 43 HOH HOH . 
N 4 HOH A 8 334 44 HOH HOH . 
N 4 HOH A 9 335 51 HOH HOH . 
N 4 HOH A 10 336 67 HOH HOH . 
N 4 HOH A 11 337 76 HOH HOH . 
N 4 HOH A 12 338 83 HOH HOH . 
N 4 HOH A 13 339 94 HOH HOH . 
N 4 HOH A 14 340 95 HOH HOH . 
N 4 HOH A 15 341 105 HOH HOH . 
N 4 HOH A 16 342 110 HOH HOH . 
N 4 HOH A 17 343 114 HOH HOH . 
N 4 HOH A 18 344 118 HOH HOH . 
N 4 HOH A 19 345 119 HOH HOH . 
N 4 HOH A 20 346 122 HOH HOH . 
N 4 HOH A 21 347 125 HOH HOH . 
N 4 HOH A 22 348 145 HOH HOH . 
O 4 HOH B 1 327 5 HOH HOH . 
O 4 HOH B 2 328 14 HOH HOH . 
O 4 HOH B 3 329 15 HOH HOH . 
O 4 HOH B 4 330 17 HOH HOH . 
O 4 HOH B 5 331 20 HOH HOH . 
O 4 HOH B 6 332 24 HOH HOH . 
O 4 HOH B 7 333 29 HOH HOH . 
O 4 HOH B 8 334 46 HOH HOH . 
O 4 HOH B 9 335 59 HOH HOH . 
O 4 HOH B 10 336 68 HOH HOH . 
O 4 HOH B 11 337 75 HOH HOH . 
O 4 HOH B 12 338 79 HOH HOH . 
O 4 HOH B 13 339 82 HOH HOH . 
O 4 HOH B 14 340 84 HOH HOH . 
O 4 HOH B 15 341 107 HOH HOH . 
O 4 HOH B 16 342 120 HOH HOH . 
O 4 HOH B 17 343 138 HOH HOH . 
O 4 HOH B 18 344 141 HOH HOH . 
O 4 HOH B 19 345 144 HOH HOH . 
O 4 HOH B 20 346 147 HOH HOH . 
P 4 HOH C 1 328 1 HOH HOH . 
P 4 HOH C 2 329 8 HOH HOH . 
P 4 HOH C 3 330 9 HOH HOH . 
P 4 HOH C 4 331 23 HOH HOH . 
P 4 HOH C 5 332 25 HOH HOH . 
P 4 HOH C 6 333 26 HOH HOH . 
P 4 HOH C 7 334 27 HOH HOH . 
P 4 HOH C 8 335 35 HOH HOH . 
P 4 HOH C 9 336 47 HOH HOH . 
P 4 HOH C 10 337 48 HOH HOH . 
P 4 HOH C 11 338 55 HOH HOH . 
P 4 HOH C 12 339 56 HOH HOH . 
P 4 HOH C 13 340 60 HOH HOH . 
P 4 HOH C 14 341 70 HOH HOH . 
P 4 HOH C 15 342 90 HOH HOH . 
P 4 HOH C 16 343 93 HOH HOH . 
P 4 HOH C 17 344 111 HOH HOH . 
P 4 HOH C 18 345 113 HOH HOH . 
P 4 HOH C 19 346 115 HOH HOH . 
P 4 HOH C 20 347 116 HOH HOH . 
P 4 HOH C 21 348 117 HOH HOH . 
P 4 HOH C 22 349 124 HOH HOH . 
P 4 HOH C 23 350 130 HOH HOH . 
P 4 HOH C 24 351 142 HOH HOH . 
Q 4 HOH D 1 329 28 HOH HOH . 
Q 4 HOH D 2 330 37 HOH HOH . 
Q 4 HOH D 3 331 38 HOH HOH . 
Q 4 HOH D 4 332 41 HOH HOH . 
Q 4 HOH D 5 333 53 HOH HOH . 
Q 4 HOH D 6 334 87 HOH HOH . 
Q 4 HOH D 7 335 112 HOH HOH . 
R 4 HOH E 1 327 19 HOH HOH . 
R 4 HOH E 2 328 42 HOH HOH . 
R 4 HOH E 3 329 45 HOH HOH . 
R 4 HOH E 4 330 54 HOH HOH . 
R 4 HOH E 5 331 61 HOH HOH . 
R 4 HOH E 6 332 63 HOH HOH . 
R 4 HOH E 7 333 72 HOH HOH . 
R 4 HOH E 8 334 92 HOH HOH . 
R 4 HOH E 9 335 98 HOH HOH . 
R 4 HOH E 10 336 104 HOH HOH . 
R 4 HOH E 11 337 127 HOH HOH . 
R 4 HOH E 12 338 129 HOH HOH . 
R 4 HOH E 13 339 139 HOH HOH . 
S 4 HOH F 1 328 2 HOH HOH . 
S 4 HOH F 2 329 4 HOH HOH . 
S 4 HOH F 3 330 6 HOH HOH . 
S 4 HOH F 4 331 7 HOH HOH . 
S 4 HOH F 5 332 12 HOH HOH . 
S 4 HOH F 6 333 18 HOH HOH . 
S 4 HOH F 7 334 21 HOH HOH . 
S 4 HOH F 8 335 31 HOH HOH . 
S 4 HOH F 9 336 32 HOH HOH . 
S 4 HOH F 10 337 36 HOH HOH . 
S 4 HOH F 11 338 50 HOH HOH . 
S 4 HOH F 12 339 65 HOH HOH . 
S 4 HOH F 13 340 69 HOH HOH . 
S 4 HOH F 14 341 71 HOH HOH . 
S 4 HOH F 15 342 77 HOH HOH . 
S 4 HOH F 16 343 81 HOH HOH . 
S 4 HOH F 17 344 85 HOH HOH . 
S 4 HOH F 18 345 91 HOH HOH . 
S 4 HOH F 19 346 99 HOH HOH . 
S 4 HOH F 20 347 103 HOH HOH . 
S 4 HOH F 21 348 108 HOH HOH . 
S 4 HOH F 22 349 109 HOH HOH . 
S 4 HOH F 23 350 121 HOH HOH . 
S 4 HOH F 24 351 123 HOH HOH . 
S 4 HOH F 25 352 134 HOH HOH . 
S 4 HOH F 26 353 135 HOH HOH . 
S 4 HOH F 27 354 137 HOH HOH . 
T 4 HOH G 1 328 10 HOH HOH . 
T 4 HOH G 2 329 39 HOH HOH . 
T 4 HOH G 3 330 49 HOH HOH . 
T 4 HOH G 4 331 52 HOH HOH . 
T 4 HOH G 5 332 57 HOH HOH . 
T 4 HOH G 6 333 58 HOH HOH . 
T 4 HOH G 7 334 64 HOH HOH . 
T 4 HOH G 8 335 66 HOH HOH . 
T 4 HOH G 9 336 73 HOH HOH . 
T 4 HOH G 10 337 78 HOH HOH . 
T 4 HOH G 11 338 80 HOH HOH . 
T 4 HOH G 12 339 86 HOH HOH . 
T 4 HOH G 13 340 97 HOH HOH . 
T 4 HOH G 14 341 100 HOH HOH . 
T 4 HOH G 15 342 102 HOH HOH . 
T 4 HOH G 16 343 126 HOH HOH . 
T 4 HOH G 17 344 131 HOH HOH . 
T 4 HOH G 18 345 133 HOH HOH . 
T 4 HOH G 19 346 146 HOH HOH . 
T 4 HOH G 20 347 148 HOH HOH . 
U 4 HOH H 1 327 13 HOH HOH . 
U 4 HOH H 2 328 34 HOH HOH . 
U 4 HOH H 3 329 88 HOH HOH . 
U 4 HOH H 4 330 89 HOH HOH . 
U 4 HOH H 5 331 96 HOH HOH . 
U 4 HOH H 6 332 101 HOH HOH . 
U 4 HOH H 7 333 106 HOH HOH . 
U 4 HOH H 8 334 128 HOH HOH . 
U 4 HOH H 9 335 132 HOH HOH . 
U 4 HOH H 10 336 136 HOH HOH . 
U 4 HOH H 11 337 143 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . J 3 19.456 36.356 8.213 1 76.91 ? PA NAD 327 D 1 
HETATM 2 O O1A NAD . . . J 3 19.742 34.904 8.204 1 69.71 ? O1A NAD 327 D 1 
HETATM 3 O O2A NAD . . . J 3 20.292 37.073 9.206 1 72.2 ? O2A NAD 327 D 1 
HETATM 4 O O5B NAD . . . J 3 17.899 36.591 8.488 1 71.38 ? O5B NAD 327 D 1 
HETATM 5 C C5B NAD . . . J 3 16.947 35.587 8.249 1 72.64 ? C5B NAD 327 D 1 
HETATM 6 C C4B NAD . . . J 3 16.395 35.356 9.641 1 66.45 ? C4B NAD 327 D 1 
HETATM 7 O O4B NAD . . . J 3 15.357 34.41 9.677 1 67.64 ? O4B NAD 327 D 1 
HETATM 8 C C3B NAD . . . J 3 17.502 34.791 10.507 1 72.62 ? C3B NAD 327 D 1 
HETATM 9 O O3B NAD . . . J 3 18.221 35.824 11.141 1 75.9 ? O3B NAD 327 D 1 
HETATM 10 C C2B NAD . . . J 3 16.775 33.929 11.509 1 76.09 ? C2B NAD 327 D 1 
HETATM 11 O O2B NAD . . . J 3 16.724 34.657 12.712 1 75.36 ? O2B NAD 327 D 1 
HETATM 12 C C1B NAD . . . J 3 15.375 33.774 10.935 1 72.5 ? C1B NAD 327 D 1 
HETATM 13 N N9A NAD . . . J 3 15.024 32.361 10.737 1 74.06 ? N9A NAD 327 D 1 
HETATM 14 C C8A NAD . . . J 3 15.764 31.426 10.059 1 73.99 ? C8A NAD 327 D 1 
HETATM 15 N N7A NAD . . . J 3 15.094 30.249 10.094 1 74.09 ? N7A NAD 327 D 1 
HETATM 16 C C5A NAD . . . J 3 13.941 30.422 10.78 1 73.05 ? C5A NAD 327 D 1 
HETATM 17 C C6A NAD . . . J 3 12.905 29.552 11.105 1 81.28 ? C6A NAD 327 D 1 
HETATM 18 N N6A NAD . . . J 3 12.82 28.371 10.495 1 81.85 ? N6A NAD 327 D 1 
HETATM 19 N N1A NAD . . . J 3 11.828 30.023 11.832 1 77.77 ? N1A NAD 327 D 1 
HETATM 20 C C2A NAD . . . J 3 11.788 31.346 12.23 1 76.65 ? C2A NAD 327 D 1 
HETATM 21 N N3A NAD . . . J 3 12.82 32.203 11.899 1 73.93 ? N3A NAD 327 D 1 
HETATM 22 C C4A NAD . . . J 3 13.881 31.748 11.188 1 76.56 ? C4A NAD 327 D 1 
HETATM 23 O O3 NAD . . . J 3 19.604 36.941 6.723 1 81.55 ? O3 NAD 327 D 1 
HETATM 24 P PN NAD . . . J 3 19.018 38.393 6.347 1 75.62 ? PN NAD 327 D 1 
HETATM 25 O O1N NAD . . . J 3 20.133 39.242 5.873 1 66.3 ? O1N NAD 327 D 1 
HETATM 26 O O2N NAD . . . J 3 18.134 38.864 7.44 1 67.01 ? O2N NAD 327 D 1 
HETATM 27 O O5D NAD . . . J 3 18.109 38.026 5.068 1 72.92 ? O5D NAD 327 D 1 
HETATM 28 C C5D NAD . . . J 3 16.785 37.557 5.21 1 74.27 ? C5D NAD 327 D 1 
HETATM 29 C C4D NAD . . . J 3 16.272 37.139 3.836 1 79.67 ? C4D NAD 327 D 1 
HETATM 30 O O4D NAD . . . J 3 15.777 38.238 3.087 1 74.53 ? O4D NAD 327 D 1 
HETATM 31 C C3D NAD . . . J 3 17.409 36.526 3.03 1 82.41 ? C3D NAD 327 D 1 
HETATM 32 O O3D NAD . . . J 3 17.247 35.13 2.915 1 83.48 ? O3D NAD 327 D 1 
HETATM 33 C C2D NAD . . . J 3 17.347 37.186 1.669 1 77.86 ? C2D NAD 327 D 1 
HETATM 34 O O2D NAD . . . J 3 17.112 36.21 0.684 1 81.36 ? O2D NAD 327 D 1 
HETATM 35 C C1D NAD . . . J 3 16.181 38.159 1.729 1 75.1 ? C1D NAD 327 D 1 
HETATM 36 N N1N NAD . . . J 3 16.649 39.467 1.233 1 75.38 ? N1N NAD 327 D 1 
HETATM 37 C C2N NAD . . . J 3 16.275 39.965 0.01 1 72.48 ? C2N NAD 327 D 1 
HETATM 38 C C3N NAD . . . J 3 16.765 41.198 -0.429 1 73.25 ? C3N NAD 327 D 1 
HETATM 39 C C7N NAD . . . J 3 16.92 41.446 -1.901 1 75.6 ? C7N NAD 327 D 1 
HETATM 40 O O7N NAD . . . J 3 18.2 41.726 -2.44 1 70.15 ? O7N NAD 327 D 1 
HETATM 41 N N7N NAD . . . J 3 15.827 41.421 -2.653 1 78.16 ? N7N NAD 327 D 1 
HETATM 42 C C4N NAD . . . J 3 17.6 41.93 0.397 1 69.78 ? C4N NAD 327 D 1 
HETATM 43 C C5N NAD . . . J 3 17.97 41.418 1.627 1 74.7 ? C5N NAD 327 D 1 
HETATM 44 C C6N NAD . . . J 3 17.487 40.183 2.033 1 79.92 ? C6N NAD 327 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#