data_3PQD # _model_server_result.job_id '_ls0G5RPKutCzroDIXqbOQ' _model_server_result.datetime_utc '2024-12-21 12:42:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":327}' # _entry.id 3PQD # _exptl.entry_id 3PQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.116 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 1,6-di-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PQD _cell.length_a 171.041 _cell.length_b 171.041 _cell.length_c 96.272 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,N,O,P,Q 1 1 E,F,G,H,L,M,R,S,T,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 K N N ? 2 L N N ? 2 M N N # _chem_comp.formula 'C6 H14 O12 P2' _chem_comp.formula_weight 340.116 _chem_comp.id FBP _chem_comp.mon_nstd_flag n _chem_comp.name 1,6-di-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms BETA-FRUCTOSE-1,6-DIPHOSPHATE;FRUCTOSE-1,6-BISPHOSPHATE;1,6-di-O-phosphono-beta-D-fructose;1,6-di-O-phosphono-D-fructose;1,6-di-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P FBP doub 83 n n P1 O2P FBP sing 84 n n P1 O3P FBP sing 85 n n P1 O1 FBP sing 86 n n O2P HOP2 FBP sing 87 n n O3P HOP3 FBP sing 88 n n O1 C1 FBP sing 89 n n C1 C2 FBP sing 90 n n C1 H11 FBP sing 91 n n C1 H12 FBP sing 92 n n C2 O2 FBP sing 93 n n C2 C3 FBP sing 94 n n C2 O5 FBP sing 95 n n O2 HO2 FBP sing 96 n n C3 O3 FBP sing 97 n n C3 C4 FBP sing 98 n n C3 H3 FBP sing 99 n n O3 HO3 FBP sing 100 n n C4 O4 FBP sing 101 n n C4 C5 FBP sing 102 n n C4 H4 FBP sing 103 n n O4 HO4 FBP sing 104 n n C5 O5 FBP sing 105 n n C5 C6 FBP sing 106 n n C5 H5 FBP sing 107 n n C6 O6 FBP sing 108 n n C6 H61 FBP sing 109 n n C6 H62 FBP sing 110 n n O6 P2 FBP sing 111 n n P2 O4P FBP doub 112 n n P2 O5P FBP sing 113 n n P2 O6P FBP sing 114 n n O5P HOP5 FBP sing 115 n n O6P HOP6 FBP sing 116 n n # _pdbx_chem_comp_identifier.comp_id FBP _pdbx_chem_comp_identifier.identifier b-D-Fruf1PO36PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3PQD _atom_sites.fract_transf_matrix[1][1] 0.005847 _atom_sites.fract_transf_matrix[1][2] 0.003376 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006751 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 FBP C 1 327 1 FBP FBP . J 3 NAD D 1 327 1 NAD NAD . K 2 FBP D 1 328 1 FBP FBP . L 2 FBP F 1 327 1 FBP FBP . M 2 FBP G 1 327 1 FBP FBP . N 4 HOH A 1 327 3 HOH HOH . N 4 HOH A 2 328 11 HOH HOH . N 4 HOH A 3 329 22 HOH HOH . N 4 HOH A 4 330 30 HOH HOH . N 4 HOH A 5 331 33 HOH HOH . N 4 HOH A 6 332 40 HOH HOH . N 4 HOH A 7 333 43 HOH HOH . N 4 HOH A 8 334 44 HOH HOH . N 4 HOH A 9 335 51 HOH HOH . N 4 HOH A 10 336 67 HOH HOH . N 4 HOH A 11 337 76 HOH HOH . N 4 HOH A 12 338 83 HOH HOH . N 4 HOH A 13 339 94 HOH HOH . N 4 HOH A 14 340 95 HOH HOH . N 4 HOH A 15 341 105 HOH HOH . N 4 HOH A 16 342 110 HOH HOH . N 4 HOH A 17 343 114 HOH HOH . N 4 HOH A 18 344 118 HOH HOH . N 4 HOH A 19 345 119 HOH HOH . N 4 HOH A 20 346 122 HOH HOH . N 4 HOH A 21 347 125 HOH HOH . N 4 HOH A 22 348 145 HOH HOH . O 4 HOH B 1 327 5 HOH HOH . O 4 HOH B 2 328 14 HOH HOH . O 4 HOH B 3 329 15 HOH HOH . O 4 HOH B 4 330 17 HOH HOH . O 4 HOH B 5 331 20 HOH HOH . O 4 HOH B 6 332 24 HOH HOH . O 4 HOH B 7 333 29 HOH HOH . O 4 HOH B 8 334 46 HOH HOH . O 4 HOH B 9 335 59 HOH HOH . O 4 HOH B 10 336 68 HOH HOH . O 4 HOH B 11 337 75 HOH HOH . O 4 HOH B 12 338 79 HOH HOH . O 4 HOH B 13 339 82 HOH HOH . O 4 HOH B 14 340 84 HOH HOH . O 4 HOH B 15 341 107 HOH HOH . O 4 HOH B 16 342 120 HOH HOH . O 4 HOH B 17 343 138 HOH HOH . O 4 HOH B 18 344 141 HOH HOH . O 4 HOH B 19 345 144 HOH HOH . O 4 HOH B 20 346 147 HOH HOH . P 4 HOH C 1 328 1 HOH HOH . P 4 HOH C 2 329 8 HOH HOH . P 4 HOH C 3 330 9 HOH HOH . P 4 HOH C 4 331 23 HOH HOH . P 4 HOH C 5 332 25 HOH HOH . P 4 HOH C 6 333 26 HOH HOH . P 4 HOH C 7 334 27 HOH HOH . P 4 HOH C 8 335 35 HOH HOH . P 4 HOH C 9 336 47 HOH HOH . P 4 HOH C 10 337 48 HOH HOH . P 4 HOH C 11 338 55 HOH HOH . P 4 HOH C 12 339 56 HOH HOH . P 4 HOH C 13 340 60 HOH HOH . P 4 HOH C 14 341 70 HOH HOH . P 4 HOH C 15 342 90 HOH HOH . P 4 HOH C 16 343 93 HOH HOH . P 4 HOH C 17 344 111 HOH HOH . P 4 HOH C 18 345 113 HOH HOH . P 4 HOH C 19 346 115 HOH HOH . P 4 HOH C 20 347 116 HOH HOH . P 4 HOH C 21 348 117 HOH HOH . P 4 HOH C 22 349 124 HOH HOH . P 4 HOH C 23 350 130 HOH HOH . P 4 HOH C 24 351 142 HOH HOH . Q 4 HOH D 1 329 28 HOH HOH . Q 4 HOH D 2 330 37 HOH HOH . Q 4 HOH D 3 331 38 HOH HOH . Q 4 HOH D 4 332 41 HOH HOH . Q 4 HOH D 5 333 53 HOH HOH . Q 4 HOH D 6 334 87 HOH HOH . Q 4 HOH D 7 335 112 HOH HOH . R 4 HOH E 1 327 19 HOH HOH . R 4 HOH E 2 328 42 HOH HOH . R 4 HOH E 3 329 45 HOH HOH . R 4 HOH E 4 330 54 HOH HOH . R 4 HOH E 5 331 61 HOH HOH . R 4 HOH E 6 332 63 HOH HOH . R 4 HOH E 7 333 72 HOH HOH . R 4 HOH E 8 334 92 HOH HOH . R 4 HOH E 9 335 98 HOH HOH . R 4 HOH E 10 336 104 HOH HOH . R 4 HOH E 11 337 127 HOH HOH . R 4 HOH E 12 338 129 HOH HOH . R 4 HOH E 13 339 139 HOH HOH . S 4 HOH F 1 328 2 HOH HOH . S 4 HOH F 2 329 4 HOH HOH . S 4 HOH F 3 330 6 HOH HOH . S 4 HOH F 4 331 7 HOH HOH . S 4 HOH F 5 332 12 HOH HOH . S 4 HOH F 6 333 18 HOH HOH . S 4 HOH F 7 334 21 HOH HOH . S 4 HOH F 8 335 31 HOH HOH . S 4 HOH F 9 336 32 HOH HOH . S 4 HOH F 10 337 36 HOH HOH . S 4 HOH F 11 338 50 HOH HOH . S 4 HOH F 12 339 65 HOH HOH . S 4 HOH F 13 340 69 HOH HOH . S 4 HOH F 14 341 71 HOH HOH . S 4 HOH F 15 342 77 HOH HOH . S 4 HOH F 16 343 81 HOH HOH . S 4 HOH F 17 344 85 HOH HOH . S 4 HOH F 18 345 91 HOH HOH . S 4 HOH F 19 346 99 HOH HOH . S 4 HOH F 20 347 103 HOH HOH . S 4 HOH F 21 348 108 HOH HOH . S 4 HOH F 22 349 109 HOH HOH . S 4 HOH F 23 350 121 HOH HOH . S 4 HOH F 24 351 123 HOH HOH . S 4 HOH F 25 352 134 HOH HOH . S 4 HOH F 26 353 135 HOH HOH . S 4 HOH F 27 354 137 HOH HOH . T 4 HOH G 1 328 10 HOH HOH . T 4 HOH G 2 329 39 HOH HOH . T 4 HOH G 3 330 49 HOH HOH . T 4 HOH G 4 331 52 HOH HOH . T 4 HOH G 5 332 57 HOH HOH . T 4 HOH G 6 333 58 HOH HOH . T 4 HOH G 7 334 64 HOH HOH . T 4 HOH G 8 335 66 HOH HOH . T 4 HOH G 9 336 73 HOH HOH . T 4 HOH G 10 337 78 HOH HOH . T 4 HOH G 11 338 80 HOH HOH . T 4 HOH G 12 339 86 HOH HOH . T 4 HOH G 13 340 97 HOH HOH . T 4 HOH G 14 341 100 HOH HOH . T 4 HOH G 15 342 102 HOH HOH . T 4 HOH G 16 343 126 HOH HOH . T 4 HOH G 17 344 131 HOH HOH . T 4 HOH G 18 345 133 HOH HOH . T 4 HOH G 19 346 146 HOH HOH . T 4 HOH G 20 347 148 HOH HOH . U 4 HOH H 1 327 13 HOH HOH . U 4 HOH H 2 328 34 HOH HOH . U 4 HOH H 3 329 88 HOH HOH . U 4 HOH H 4 330 89 HOH HOH . U 4 HOH H 5 331 96 HOH HOH . U 4 HOH H 6 332 101 HOH HOH . U 4 HOH H 7 333 106 HOH HOH . U 4 HOH H 8 334 128 HOH HOH . U 4 HOH H 9 335 132 HOH HOH . U 4 HOH H 10 336 136 HOH HOH . U 4 HOH H 11 337 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 FBP . . . M 2 -51.752 41.634 -2.972 1 47.41 ? P1 FBP 327 G 1 HETATM 2 O O1P FBP . . . M 2 -51.039 41.024 -1.796 1 44.29 ? O1P FBP 327 G 1 HETATM 3 O O2P FBP . . . M 2 -53.006 42.309 -2.439 1 48.74 ? O2P FBP 327 G 1 HETATM 4 O O3P FBP . . . M 2 -50.862 42.655 -3.628 1 44.92 ? O3P FBP 327 G 1 HETATM 5 O O1 FBP . . . M 2 -52.215 40.452 -3.989 1 52.35 ? O1 FBP 327 G 1 HETATM 6 C C1 FBP . . . M 2 -51.595 39.952 -5.177 1 44.99 ? C1 FBP 327 G 1 HETATM 7 C C2 FBP . . . M 2 -52.728 39.169 -5.848 1 41.49 ? C2 FBP 327 G 1 HETATM 8 O O2 FBP . . . M 2 -53.843 40.091 -5.953 1 60.57 ? O2 FBP 327 G 1 HETATM 9 C C3 FBP . . . M 2 -52.66 38.54 -7.245 1 36.7 ? C3 FBP 327 G 1 HETATM 10 O O3 FBP . . . M 2 -51.378 38.175 -7.693 1 52.92 ? O3 FBP 327 G 1 HETATM 11 C C4 FBP . . . M 2 -53.545 37.303 -7.071 1 46.68 ? C4 FBP 327 G 1 HETATM 12 O O4 FBP . . . M 2 -54.491 37.17 -8.105 1 38 ? O4 FBP 327 G 1 HETATM 13 C C5 FBP . . . M 2 -54.217 37.543 -5.722 1 37.9 ? C5 FBP 327 G 1 HETATM 14 O O5 FBP . . . M 2 -53.19 38.165 -4.993 1 37.48 ? O5 FBP 327 G 1 HETATM 15 C C6 FBP . . . M 2 -54.669 36.294 -4.995 1 42.06 ? C6 FBP 327 G 1 HETATM 16 O O6 FBP . . . M 2 -55.44 36.687 -3.877 1 41.81 ? O6 FBP 327 G 1 HETATM 17 P P2 FBP . . . M 2 -55.736 35.598 -2.731 1 39.32 ? P2 FBP 327 G 1 HETATM 18 O O4P FBP . . . M 2 -54.441 35.051 -2.198 1 39.06 ? O4P FBP 327 G 1 HETATM 19 O O5P FBP . . . M 2 -56.501 34.469 -3.389 1 44.92 ? O5P FBP 327 G 1 HETATM 20 O O6P FBP . . . M 2 -56.557 36.175 -1.594 1 36.67 ? O6P FBP 327 G 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #