data_3PQR # _model_server_result.job_id 8-OhX68HNpYalTe89srg3Q _model_server_result.datetime_utc '2024-11-22 09:45:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pqr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 3PQR # _exptl.entry_id 3PQR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 7 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PQR _cell.length_a 241.55 _cell.length_b 241.55 _cell.length_c 109.87 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PQR _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 109.87 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 4 1 2 GLC GLC C1 O1 . O1 HO1 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 402 NAG 3 n C NAG 2 C 2 NAG A 403 NAG 3 n C BMA 3 C 3 BMA A 404 BMA 3 n C MAN 4 C 4 MAN A 405 MAN 4 n D GLC 1 D 1 GLC A 1001 TRE 4 n D GLC 2 D 2 GLC A 1001 TRE # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? covale ? covale1 A ND2 ASN 2 A ASN 2 1_555 F C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A ND2 ASN 15 A ASN 15 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A NZ LYS 296 A LYS 296 1_555 E C15 RET . A RET 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale4 A SG CYS 323 A CYS 323 1_555 I C1 PLM . A PLM 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.833 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale7 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale8 D C1 GLC . D GLC 1 1_555 D O1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 sing # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 100 n n C1 C2 BOG sing 101 n n C1 O5 BOG sing 102 n n C1 H1 BOG sing 103 n n O1 C1' BOG sing 104 n n C2 O2 BOG sing 105 n n C2 C3 BOG sing 106 n n C2 H2 BOG sing 107 n n O2 HO2 BOG sing 108 n n C3 O3 BOG sing 109 n n C3 C4 BOG sing 110 n n C3 H3 BOG sing 111 n n O3 HO3 BOG sing 112 n n C4 O4 BOG sing 113 n n C4 C5 BOG sing 114 n n C4 H4 BOG sing 115 n n O4 HO4 BOG sing 116 n n C5 O5 BOG sing 117 n n C5 C6 BOG sing 118 n n C5 H5 BOG sing 119 n n C6 O6 BOG sing 120 n n C6 H61 BOG sing 121 n n C6 H62 BOG sing 122 n n O6 HO6 BOG sing 123 n n C1' C2' BOG sing 124 n n C1' "H1'1" BOG sing 125 n n C1' "H1'2" BOG sing 126 n n C2' C3' BOG sing 127 n n C2' "H2'1" BOG sing 128 n n C2' "H2'2" BOG sing 129 n n C3' C4' BOG sing 130 n n C3' "H3'1" BOG sing 131 n n C3' "H3'2" BOG sing 132 n n C4' C5' BOG sing 133 n n C4' "H4'1" BOG sing 134 n n C4' "H4'2" BOG sing 135 n n C5' C6' BOG sing 136 n n C5' "H5'1" BOG sing 137 n n C5' "H5'2" BOG sing 138 n n C6' C7' BOG sing 139 n n C6' "H6'1" BOG sing 140 n n C6' "H6'2" BOG sing 141 n n C7' C8' BOG sing 142 n n C7' "H7'1" BOG sing 143 n n C7' "H7'2" BOG sing 144 n n C8' "H8'1" BOG sing 145 n n C8' "H8'2" BOG sing 146 n n C8' "H8'3" BOG sing 147 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3PQR _atom_sites.fract_transf_matrix[1][1] 0.00414 _atom_sites.fract_transf_matrix[1][2] 0.00239 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 RET A 1 401 401 RET RET . F 6 NAG A 1 501 501 NAG NAG . G 7 BOG A 1 601 601 BOG BOG . H 7 BOG A 1 602 602 BOG BOG . I 8 PLM A 1 701 701 PLM PLM . J 9 SO4 A 1 801 801 SO4 SO4 . K 10 ACT A 1 901 901 ACT ACT . L 10 ACT A 1 902 902 ACT ACT . M 11 HOH A 1 349 1 HOH HOH . M 11 HOH A 2 350 2 HOH HOH . M 11 HOH A 3 351 3 HOH HOH . M 11 HOH A 4 352 6 HOH HOH . M 11 HOH A 5 353 7 HOH HOH . M 11 HOH A 6 354 8 HOH HOH . M 11 HOH A 7 355 9 HOH HOH . M 11 HOH A 8 356 10 HOH HOH . M 11 HOH A 9 357 11 HOH HOH . M 11 HOH A 10 358 12 HOH HOH . M 11 HOH A 11 359 13 HOH HOH . M 11 HOH A 12 360 14 HOH HOH . M 11 HOH A 13 361 15 HOH HOH . M 11 HOH A 14 362 16 HOH HOH . M 11 HOH A 15 363 17 HOH HOH . M 11 HOH A 16 364 18 HOH HOH . M 11 HOH A 17 365 19 HOH HOH . M 11 HOH A 18 366 20 HOH HOH . M 11 HOH A 19 367 22 HOH HOH . N 11 HOH B 1 4 4 HOH HOH . N 11 HOH B 2 5 5 HOH HOH . N 11 HOH B 3 21 21 HOH HOH . N 11 HOH B 4 23 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . G 7 -63.513 5.447 48.737 1 95.1 ? C1 BOG 601 A 1 HETATM 2 O O1 BOG . . . G 7 -62.486 6.162 48.017 1 81.85 ? O1 BOG 601 A 1 HETATM 3 C C2 BOG . . . G 7 -64.596 6.462 49.187 1 100.07 ? C2 BOG 601 A 1 HETATM 4 O O2 BOG . . . G 7 -64.505 6.705 50.607 1 103.73 ? O2 BOG 601 A 1 HETATM 5 C C3 BOG . . . G 7 -66.056 6.104 48.805 1 98.09 ? C3 BOG 601 A 1 HETATM 6 O O3 BOG . . . G 7 -66.477 7.013 47.791 1 99.99 ? O3 BOG 601 A 1 HETATM 7 C C4 BOG . . . G 7 -66.308 4.665 48.304 1 99.6 ? C4 BOG 601 A 1 HETATM 8 O O4 BOG . . . G 7 -67.452 4.125 48.975 1 94.94 ? O4 BOG 601 A 1 HETATM 9 C C5 BOG . . . G 7 -65.093 3.737 48.483 1 102.5 ? C5 BOG 601 A 1 HETATM 10 O O5 BOG . . . G 7 -64.002 4.418 47.856 1 100.89 ? O5 BOG 601 A 1 HETATM 11 C C6 BOG . . . G 7 -65.239 2.325 47.845 1 99.68 ? C6 BOG 601 A 1 HETATM 12 O O6 BOG . . . G 7 -64.719 1.313 48.729 1 86.44 ? O6 BOG 601 A 1 HETATM 13 C C1' BOG . . . G 7 -61.178 5.699 48.336 1 68.45 ? C1' BOG 601 A 1 HETATM 14 C C2' BOG . . . G 7 -60.259 6.916 48.217 1 65.49 ? C2' BOG 601 A 1 HETATM 15 C C3' BOG . . . G 7 -58.78 6.521 48.18 1 65.52 ? C3' BOG 601 A 1 HETATM 16 C C4' BOG . . . G 7 -57.894 7.747 48.373 1 66.74 ? C4' BOG 601 A 1 HETATM 17 C C5' BOG . . . G 7 -56.52 7.525 47.734 1 71.23 ? C5' BOG 601 A 1 HETATM 18 C C6' BOG . . . G 7 -55.413 7.626 48.794 1 68.97 ? C6' BOG 601 A 1 HETATM 19 C C7' BOG . . . G 7 -54.121 8.232 48.234 1 63.1 ? C7' BOG 601 A 1 HETATM 20 C C8' BOG . . . G 7 -52.887 7.522 48.799 1 63.51 ? C8' BOG 601 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #