data_3PR5 # _model_server_result.job_id DbGa4xp25IuWwD1JYIOlPw _model_server_result.datetime_utc '2024-10-18 14:32:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pr5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":343}' # _entry.id 3PR5 # _exptl.entry_id 3PR5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PR5 _cell.length_a 95.607 _cell.length_b 101.993 _cell.length_c 52.288 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PR5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 7 B ASP 7 1_555 E CA CA . B CA 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc2 A O PHE 8 B PHE 8 1_555 E CA CA . B CA 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc3 A OD2 ASP 105 B ASP 105 1_555 E CA CA . B CA 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc4 A O ALA 181 B ALA 181 1_555 D CA CA . B CA 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc5 A O ILE 186 B ILE 186 1_555 D CA CA . B CA 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc6 E CA CA . B CA 343 1_555 F O1A ATP . B ATP 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc7 E CA CA . B CA 343 1_555 F O1B ATP . B ATP 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc8 E CA CA . B CA 343 1_555 G O HOH . B HOH 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? hydrog WATSON-CRICK hydrog1 B N1 DG 1 P DG 1 1_555 C N3 DC 18 T DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 1 P DG 1 1_555 C O2 DC 18 T DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 1 P DG 1 1_555 C N4 DC 18 T DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DG 2 P DG 2 1_555 C N3 DC 17 T DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 DG 2 P DG 2 1_555 C O2 DC 17 T DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 DG 2 P DG 2 1_555 C N4 DC 17 T DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N1 DG 3 P DG 3 1_555 C N3 DC 16 T DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N2 DG 3 P DG 3 1_555 C O2 DC 16 T DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O6 DG 3 P DG 3 1_555 C N4 DC 16 T DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N1 DG 4 P DG 4 1_555 C N3 DC 15 T DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N2 DG 4 P DG 4 1_555 C O2 DC 15 T DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O6 DG 4 P DG 4 1_555 C N4 DC 15 T DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N1 DG 5 P DG 5 1_555 C N3 DC 14 T DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N2 DG 5 P DG 5 1_555 C O2 DC 14 T DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O6 DG 5 P DG 5 1_555 C N4 DC 14 T DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N1 DA 6 P DA 6 1_555 C N3 DT 13 T DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N6 DA 6 P DA 6 1_555 C O4 DT 13 T DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N1 DA 7 P DA 7 1_555 C N3 DT 12 T DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N6 DA 7 P DA 7 1_555 C O4 DT 12 T DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N1 DG 8 P DG 8 1_555 C N3 DC 11 T DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N2 DG 8 P DG 8 1_555 C O2 DC 11 T DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O6 DG 8 P DG 8 1_555 C N4 DC 11 T DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N1 DG 9 P DG 9 1_555 C N3 DC 10 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N2 DG 9 P DG 9 1_555 C O2 DC 10 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B O6 DG 9 P DG 9 1_555 C N4 DC 10 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N1 DA 10 P DA 10 1_555 C N3 DT 9 T DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N6 DA 10 P DA 10 1_555 C O4 DT 9 T DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B N3 DC 11 P DC 11 1_555 C N1 DG 8 T DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N4 DC 11 P DC 11 1_555 C O6 DG 8 T DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B O2 DC 11 P DC 11 1_555 C N2 DG 8 T DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B N3 DT 12 P DT 12 1_555 C N1 DA 7 T DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 B O4 DT 12 P DT 12 1_555 C N6 DA 7 T DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 B N3 DC 13 P DC 13 1_555 C N1 DG 6 T DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 B N4 DC 13 P DC 13 1_555 C O6 DG 6 T DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 B O2 DC 13 P DC 13 1_555 C N2 DG 6 T DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3PR5 _atom_sites.fract_transf_matrix[1][1] 0.010459 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009805 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA B 1 342 1 CA CA . E 4 CA B 1 343 1 CA CA . F 5 ATP B 1 344 1 ATP ATP . G 6 HOH B 1 345 1 HOH HOH . G 6 HOH B 2 346 4 HOH HOH . G 6 HOH B 3 347 5 HOH HOH . G 6 HOH B 4 348 6 HOH HOH . G 6 HOH B 5 349 7 HOH HOH . G 6 HOH B 6 350 9 HOH HOH . G 6 HOH B 7 351 11 HOH HOH . G 6 HOH B 8 352 18 HOH HOH . G 6 HOH B 9 353 28 HOH HOH . G 6 HOH B 10 354 30 HOH HOH . G 6 HOH B 11 355 44 HOH HOH . G 6 HOH B 12 356 48 HOH HOH . G 6 HOH B 13 357 50 HOH HOH . G 6 HOH B 14 358 51 HOH HOH . G 6 HOH B 15 359 53 HOH HOH . G 6 HOH B 16 360 56 HOH HOH . G 6 HOH B 17 361 57 HOH HOH . G 6 HOH B 18 362 58 HOH HOH . G 6 HOH B 19 363 60 HOH HOH . G 6 HOH B 20 364 61 HOH HOH . G 6 HOH B 21 365 62 HOH HOH . G 6 HOH B 22 366 63 HOH HOH . G 6 HOH B 23 367 64 HOH HOH . G 6 HOH B 24 368 66 HOH HOH . G 6 HOH B 25 369 69 HOH HOH . G 6 HOH B 26 370 74 HOH HOH . G 6 HOH B 27 371 75 HOH HOH . G 6 HOH B 28 372 77 HOH HOH . G 6 HOH B 29 373 78 HOH HOH . G 6 HOH B 30 374 79 HOH HOH . G 6 HOH B 31 375 81 HOH HOH . G 6 HOH B 32 376 84 HOH HOH . G 6 HOH B 33 377 85 HOH HOH . G 6 HOH B 34 378 86 HOH HOH . G 6 HOH B 35 379 87 HOH HOH . G 6 HOH B 36 380 91 HOH HOH . G 6 HOH B 37 381 93 HOH HOH . G 6 HOH B 38 382 97 HOH HOH . G 6 HOH B 39 383 98 HOH HOH . G 6 HOH B 40 384 102 HOH HOH . G 6 HOH B 41 385 103 HOH HOH . G 6 HOH B 42 386 105 HOH HOH . G 6 HOH B 43 387 106 HOH HOH . G 6 HOH B 44 388 108 HOH HOH . G 6 HOH B 45 389 109 HOH HOH . G 6 HOH B 46 390 110 HOH HOH . G 6 HOH B 47 391 114 HOH HOH . G 6 HOH B 48 392 115 HOH HOH . G 6 HOH B 49 393 116 HOH HOH . G 6 HOH B 50 394 119 HOH HOH . G 6 HOH B 51 395 121 HOH HOH . G 6 HOH B 52 396 4 HOH HOH . G 6 HOH B 53 397 5 HOH HOH . G 6 HOH B 54 398 8 HOH HOH . G 6 HOH B 55 399 9 HOH HOH . G 6 HOH B 56 400 10 HOH HOH . G 6 HOH B 57 401 11 HOH HOH . G 6 HOH B 58 402 15 HOH HOH . H 6 HOH P 1 14 14 HOH HOH . H 6 HOH P 2 15 8 HOH HOH . H 6 HOH P 3 16 1 HOH HOH . H 6 HOH P 4 17 12 HOH HOH . H 6 HOH P 5 22 22 HOH HOH . H 6 HOH P 6 52 52 HOH HOH . H 6 HOH P 7 65 65 HOH HOH . H 6 HOH P 8 92 92 HOH HOH . H 6 HOH P 9 107 107 HOH HOH . H 6 HOH P 10 113 113 HOH HOH . I 6 HOH T 1 18 2 HOH HOH . I 6 HOH T 2 19 12 HOH HOH . I 6 HOH T 3 20 2 HOH HOH . I 6 HOH T 4 21 13 HOH HOH . I 6 HOH T 5 54 54 HOH HOH . I 6 HOH T 6 76 76 HOH HOH . I 6 HOH T 7 82 82 HOH HOH . I 6 HOH T 8 99 99 HOH HOH . I 6 HOH T 9 112 112 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -25.957 _atom_site.Cartn_y 10.172 _atom_site.Cartn_z -7.696 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 62.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 343 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #