data_3PRK # _model_server_result.job_id dIHhjc2OkUbGHwJHU-UPig _model_server_result.datetime_utc '2025-07-17 02:11:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3prk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 3PRK # _exptl.entry_id 3PRK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PRK _cell.length_a 68.3 _cell.length_b 68.3 _cell.length_c 108.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PRK _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 E CYS 34 1_555 A SG CYS 123 E CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 178 E CYS 178 1_555 A SG CYS 249 E CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A NE2 HIS 69 E HIS 69 1_555 B C1 0QE 6 I 0QE 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale2 A OG SER 224 E SER 224 1_555 B C ALV 5 I ALV 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale3 B C1 MSU 1 I MSU 280 1_555 B N ALA 2 I ALA 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C PRO 4 I PRO 283 1_555 B N ALV 5 I ALV 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 B C ALV 5 I ALV 284 1_555 B C1 0QE 6 I 0QE 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.549 ? metalc ? metalc1 A O PRO 175 E PRO 175 1_555 C CA CA . E CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc2 A O VAL 177 E VAL 177 1_555 C CA CA . E CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc3 A OD1 ASP 200 E ASP 200 1_555 C CA CA . E CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc4 A OD2 ASP 200 E ASP 200 1_555 C CA CA . E CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc5 D O HOH . E HOH 293 1_555 C CA CA . E CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc6 D O HOH . E HOH 294 1_555 C CA CA . E CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc7 D O HOH . E HOH 295 1_555 C CA CA . E CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc8 D O HOH . E HOH 296 1_555 C CA CA . E CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3PRK _atom_sites.fract_transf_matrix[1][1] 0.014641 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA E 1 500 500 CA CA . D 4 HOH E 1 286 286 HOH HOH . D 4 HOH E 2 293 293 HOH HOH . D 4 HOH E 3 294 294 HOH HOH . D 4 HOH E 4 295 295 HOH HOH . D 4 HOH E 5 296 296 HOH HOH . D 4 HOH E 6 297 297 HOH HOH . D 4 HOH E 7 298 298 HOH HOH . D 4 HOH E 8 299 299 HOH HOH . D 4 HOH E 9 300 300 HOH HOH . D 4 HOH E 10 301 301 HOH HOH . D 4 HOH E 11 302 302 HOH HOH . D 4 HOH E 12 303 303 HOH HOH . D 4 HOH E 13 304 304 HOH HOH . D 4 HOH E 14 305 305 HOH HOH . D 4 HOH E 15 306 306 HOH HOH . D 4 HOH E 16 307 307 HOH HOH . D 4 HOH E 17 308 308 HOH HOH . D 4 HOH E 18 309 309 HOH HOH . D 4 HOH E 19 310 310 HOH HOH . D 4 HOH E 20 311 311 HOH HOH . D 4 HOH E 21 312 312 HOH HOH . D 4 HOH E 22 313 313 HOH HOH . D 4 HOH E 23 314 314 HOH HOH . D 4 HOH E 24 315 315 HOH HOH . D 4 HOH E 25 316 316 HOH HOH . D 4 HOH E 26 317 317 HOH HOH . D 4 HOH E 27 318 318 HOH HOH . D 4 HOH E 28 319 319 HOH HOH . D 4 HOH E 29 320 320 HOH HOH . D 4 HOH E 30 321 321 HOH HOH . D 4 HOH E 31 322 322 HOH HOH . D 4 HOH E 32 323 323 HOH HOH . D 4 HOH E 33 324 324 HOH HOH . D 4 HOH E 34 325 325 HOH HOH . D 4 HOH E 35 326 326 HOH HOH . D 4 HOH E 36 327 327 HOH HOH . D 4 HOH E 37 328 328 HOH HOH . D 4 HOH E 38 329 329 HOH HOH . D 4 HOH E 39 330 330 HOH HOH . D 4 HOH E 40 331 331 HOH HOH . D 4 HOH E 41 332 332 HOH HOH . D 4 HOH E 42 333 333 HOH HOH . D 4 HOH E 43 334 334 HOH HOH . D 4 HOH E 44 335 335 HOH HOH . D 4 HOH E 45 336 336 HOH HOH . D 4 HOH E 46 337 337 HOH HOH . D 4 HOH E 47 338 338 HOH HOH . D 4 HOH E 48 339 339 HOH HOH . D 4 HOH E 49 340 340 HOH HOH . D 4 HOH E 50 341 341 HOH HOH . D 4 HOH E 51 342 342 HOH HOH . D 4 HOH E 52 343 343 HOH HOH . D 4 HOH E 53 344 344 HOH HOH . D 4 HOH E 54 345 345 HOH HOH . D 4 HOH E 55 346 346 HOH HOH . D 4 HOH E 56 347 347 HOH HOH . D 4 HOH E 57 348 348 HOH HOH . D 4 HOH E 58 349 349 HOH HOH . D 4 HOH E 59 350 350 HOH HOH . D 4 HOH E 60 351 351 HOH HOH . D 4 HOH E 61 352 352 HOH HOH . D 4 HOH E 62 353 353 HOH HOH . D 4 HOH E 63 354 354 HOH HOH . D 4 HOH E 64 355 355 HOH HOH . D 4 HOH E 65 356 356 HOH HOH . D 4 HOH E 66 357 357 HOH HOH . D 4 HOH E 67 358 358 HOH HOH . D 4 HOH E 68 359 359 HOH HOH . D 4 HOH E 69 360 360 HOH HOH . D 4 HOH E 70 361 361 HOH HOH . D 4 HOH E 71 362 362 HOH HOH . D 4 HOH E 72 363 363 HOH HOH . D 4 HOH E 73 364 364 HOH HOH . D 4 HOH E 74 365 365 HOH HOH . D 4 HOH E 75 366 366 HOH HOH . D 4 HOH E 76 367 367 HOH HOH . D 4 HOH E 77 368 368 HOH HOH . D 4 HOH E 78 369 369 HOH HOH . D 4 HOH E 79 370 370 HOH HOH . D 4 HOH E 80 371 371 HOH HOH . D 4 HOH E 81 372 372 HOH HOH . D 4 HOH E 82 373 373 HOH HOH . D 4 HOH E 83 374 374 HOH HOH . D 4 HOH E 84 375 375 HOH HOH . D 4 HOH E 85 376 376 HOH HOH . D 4 HOH E 86 377 377 HOH HOH . D 4 HOH E 87 378 378 HOH HOH . D 4 HOH E 88 379 379 HOH HOH . D 4 HOH E 89 380 380 HOH HOH . D 4 HOH E 90 381 381 HOH HOH . D 4 HOH E 91 382 382 HOH HOH . D 4 HOH E 92 383 383 HOH HOH . D 4 HOH E 93 384 384 HOH HOH . D 4 HOH E 94 385 385 HOH HOH . D 4 HOH E 95 386 386 HOH HOH . D 4 HOH E 96 387 387 HOH HOH . D 4 HOH E 97 388 388 HOH HOH . D 4 HOH E 98 389 389 HOH HOH . D 4 HOH E 99 390 390 HOH HOH . D 4 HOH E 100 391 391 HOH HOH . D 4 HOH E 101 392 392 HOH HOH . D 4 HOH E 102 393 393 HOH HOH . D 4 HOH E 103 394 394 HOH HOH . D 4 HOH E 104 395 395 HOH HOH . D 4 HOH E 105 396 396 HOH HOH . D 4 HOH E 106 397 397 HOH HOH . D 4 HOH E 107 398 398 HOH HOH . D 4 HOH E 108 399 399 HOH HOH . D 4 HOH E 109 400 400 HOH HOH . D 4 HOH E 110 401 401 HOH HOH . D 4 HOH E 111 402 402 HOH HOH . D 4 HOH E 112 403 403 HOH HOH . D 4 HOH E 113 404 404 HOH HOH . D 4 HOH E 114 405 405 HOH HOH . D 4 HOH E 115 406 406 HOH HOH . D 4 HOH E 116 407 407 HOH HOH . D 4 HOH E 117 408 408 HOH HOH . D 4 HOH E 118 409 409 HOH HOH . D 4 HOH E 119 410 410 HOH HOH . D 4 HOH E 120 411 411 HOH HOH . D 4 HOH E 121 412 412 HOH HOH . D 4 HOH E 122 413 413 HOH HOH . D 4 HOH E 123 414 414 HOH HOH . D 4 HOH E 124 415 415 HOH HOH . D 4 HOH E 125 416 416 HOH HOH . D 4 HOH E 126 417 417 HOH HOH . D 4 HOH E 127 418 418 HOH HOH . D 4 HOH E 128 419 419 HOH HOH . D 4 HOH E 129 420 420 HOH HOH . D 4 HOH E 130 421 421 HOH HOH . D 4 HOH E 131 422 422 HOH HOH . D 4 HOH E 132 423 423 HOH HOH . D 4 HOH E 133 424 424 HOH HOH . D 4 HOH E 134 425 425 HOH HOH . D 4 HOH E 135 426 426 HOH HOH . D 4 HOH E 136 427 427 HOH HOH . D 4 HOH E 137 428 428 HOH HOH . D 4 HOH E 138 429 429 HOH HOH . D 4 HOH E 139 430 430 HOH HOH . D 4 HOH E 140 431 431 HOH HOH . D 4 HOH E 141 432 432 HOH HOH . D 4 HOH E 142 433 433 HOH HOH . D 4 HOH E 143 434 434 HOH HOH . D 4 HOH E 144 435 435 HOH HOH . D 4 HOH E 145 436 436 HOH HOH . D 4 HOH E 146 437 437 HOH HOH . D 4 HOH E 147 438 438 HOH HOH . D 4 HOH E 148 439 439 HOH HOH . D 4 HOH E 149 440 440 HOH HOH . D 4 HOH E 150 441 441 HOH HOH . D 4 HOH E 151 442 442 HOH HOH . D 4 HOH E 152 443 443 HOH HOH . D 4 HOH E 153 444 444 HOH HOH . D 4 HOH E 154 445 445 HOH HOH . D 4 HOH E 155 446 446 HOH HOH . D 4 HOH E 156 447 447 HOH HOH . D 4 HOH E 157 450 450 HOH HOH . D 4 HOH E 158 451 451 HOH HOH . D 4 HOH E 159 454 454 HOH HOH . D 4 HOH E 160 456 456 HOH HOH . D 4 HOH E 161 458 458 HOH HOH . D 4 HOH E 162 459 459 HOH HOH . D 4 HOH E 163 460 460 HOH HOH . D 4 HOH E 164 461 461 HOH HOH . E 4 HOH I 1 448 448 HOH HOH . E 4 HOH I 2 449 449 HOH HOH . E 4 HOH I 3 452 452 HOH HOH . E 4 HOH I 4 453 453 HOH HOH . E 4 HOH I 5 455 455 HOH HOH . E 4 HOH I 6 457 457 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -34.98 _atom_site.Cartn_y 13.707 _atom_site.Cartn_z 0.015 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.88 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 500 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #