data_3PRN
#
_model_server_result.job_id            --ulfJvK-FyAW_qoNtBpKA 
_model_server_result.datetime_utc      '2024-11-14 23:38:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3prn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":292}' 
#
_entry.id    3PRN 
#
_exptl.entry_id    3PRN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              306.438 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3PRN 
_cell.length_a            104.82 
_cell.length_b            104.82 
_cell.length_c            124.36 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PRN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 52.41 90.776783 0 
3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -52.41 90.776783 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 28 A SER 28 1_555 B MG MG . A MG 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc2 A OD1 ASP 57 A ASP 57 1_555 B MG MG . A MG 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc3 B MG MG . A MG 290 1_555 F O HOH . A HOH 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc4 B MG MG . A MG 290 1_555 F O HOH . A HOH 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc5 B MG MG . A MG 290 1_555 F O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? 
#
_chem_comp.formula           'C16 H34 O5' 
_chem_comp.formula_weight    306.438 
_chem_comp.id                C8E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 C8E sing 70 n n 
C1 H11 C8E sing 71 n n 
C1 H12 C8E sing 72 n n 
C1 H13 C8E sing 73 n n 
C2 C3 C8E sing 74 n n 
C2 H21 C8E sing 75 n n 
C2 H22 C8E sing 76 n n 
C3 C4 C8E sing 77 n n 
C3 H31 C8E sing 78 n n 
C3 H32 C8E sing 79 n n 
C4 C5 C8E sing 80 n n 
C4 H41 C8E sing 81 n n 
C4 H42 C8E sing 82 n n 
C5 C6 C8E sing 83 n n 
C5 H51 C8E sing 84 n n 
C5 H52 C8E sing 85 n n 
C6 C7 C8E sing 86 n n 
C6 H61 C8E sing 87 n n 
C6 H62 C8E sing 88 n n 
C7 C8 C8E sing 89 n n 
C7 H71 C8E sing 90 n n 
C7 H72 C8E sing 91 n n 
C8 O9 C8E sing 92 n n 
C8 H81 C8E sing 93 n n 
C8 H82 C8E sing 94 n n 
O9 C10 C8E sing 95 n n 
C10 C11 C8E sing 96 n n 
C10 H101 C8E sing 97 n n 
C10 H102 C8E sing 98 n n 
C11 O12 C8E sing 99 n n 
C11 H111 C8E sing 100 n n 
C11 H112 C8E sing 101 n n 
O12 C13 C8E sing 102 n n 
C13 C14 C8E sing 103 n n 
C13 H131 C8E sing 104 n n 
C13 H132 C8E sing 105 n n 
C14 O15 C8E sing 106 n n 
C14 H141 C8E sing 107 n n 
C14 H142 C8E sing 108 n n 
O15 C16 C8E sing 109 n n 
C16 C17 C8E sing 110 n n 
C16 H161 C8E sing 111 n n 
C16 H162 C8E sing 112 n n 
C17 O18 C8E sing 113 n n 
C17 H171 C8E sing 114 n n 
C17 H172 C8E sing 115 n n 
O18 C19 C8E sing 116 n n 
C19 C20 C8E sing 117 n n 
C19 H191 C8E sing 118 n n 
C19 H192 C8E sing 119 n n 
C20 O21 C8E sing 120 n n 
C20 H201 C8E sing 121 n n 
C20 H202 C8E sing 122 n n 
O21 HO2 C8E sing 123 n n 
#
_atom_sites.entry_id                     3PRN 
_atom_sites.fract_transf_matrix[1][1]    0.00954 
_atom_sites.fract_transf_matrix[1][2]    0.005508 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011016 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008041 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 290 121 MG MG . 
C 3 C8E A 1 291 1 C8E C8E . 
D 3 C8E A 1 292 2 C8E C8E . 
E 3 C8E A 1 293 3 C8E C8E . 
F 4 HOH A 1 294 1 HOH HOH . 
F 4 HOH A 2 295 2 HOH HOH . 
F 4 HOH A 3 296 3 HOH HOH . 
F 4 HOH A 4 297 4 HOH HOH . 
F 4 HOH A 5 298 5 HOH HOH . 
F 4 HOH A 6 299 6 HOH HOH . 
F 4 HOH A 7 300 7 HOH HOH . 
F 4 HOH A 8 301 8 HOH HOH . 
F 4 HOH A 9 302 9 HOH HOH . 
F 4 HOH A 10 303 10 HOH HOH . 
F 4 HOH A 11 304 11 HOH HOH . 
F 4 HOH A 12 305 12 HOH HOH . 
F 4 HOH A 13 306 13 HOH HOH . 
F 4 HOH A 14 307 14 HOH HOH . 
F 4 HOH A 15 308 15 HOH HOH . 
F 4 HOH A 16 309 16 HOH HOH . 
F 4 HOH A 17 310 17 HOH HOH . 
F 4 HOH A 18 311 18 HOH HOH . 
F 4 HOH A 19 312 19 HOH HOH . 
F 4 HOH A 20 313 20 HOH HOH . 
F 4 HOH A 21 314 21 HOH HOH . 
F 4 HOH A 22 315 22 HOH HOH . 
F 4 HOH A 23 316 23 HOH HOH . 
F 4 HOH A 24 317 24 HOH HOH . 
F 4 HOH A 25 318 25 HOH HOH . 
F 4 HOH A 26 319 26 HOH HOH . 
F 4 HOH A 27 320 27 HOH HOH . 
F 4 HOH A 28 321 28 HOH HOH . 
F 4 HOH A 29 322 29 HOH HOH . 
F 4 HOH A 30 323 30 HOH HOH . 
F 4 HOH A 31 324 31 HOH HOH . 
F 4 HOH A 32 325 32 HOH HOH . 
F 4 HOH A 33 326 33 HOH HOH . 
F 4 HOH A 34 327 34 HOH HOH . 
F 4 HOH A 35 328 36 HOH HOH . 
F 4 HOH A 36 329 37 HOH HOH . 
F 4 HOH A 37 330 38 HOH HOH . 
F 4 HOH A 38 331 39 HOH HOH . 
F 4 HOH A 39 332 40 HOH HOH . 
F 4 HOH A 40 333 41 HOH HOH . 
F 4 HOH A 41 334 42 HOH HOH . 
F 4 HOH A 42 335 43 HOH HOH . 
F 4 HOH A 43 336 45 HOH HOH . 
F 4 HOH A 44 337 46 HOH HOH . 
F 4 HOH A 45 338 47 HOH HOH . 
F 4 HOH A 46 339 48 HOH HOH . 
F 4 HOH A 47 340 49 HOH HOH . 
F 4 HOH A 48 341 50 HOH HOH . 
F 4 HOH A 49 342 51 HOH HOH . 
F 4 HOH A 50 343 52 HOH HOH . 
F 4 HOH A 51 344 53 HOH HOH . 
F 4 HOH A 52 345 54 HOH HOH . 
F 4 HOH A 53 346 55 HOH HOH . 
F 4 HOH A 54 347 56 HOH HOH . 
F 4 HOH A 55 348 57 HOH HOH . 
F 4 HOH A 56 349 58 HOH HOH . 
F 4 HOH A 57 350 59 HOH HOH . 
F 4 HOH A 58 351 60 HOH HOH . 
F 4 HOH A 59 352 61 HOH HOH . 
F 4 HOH A 60 353 62 HOH HOH . 
F 4 HOH A 61 354 63 HOH HOH . 
F 4 HOH A 62 355 64 HOH HOH . 
F 4 HOH A 63 356 65 HOH HOH . 
F 4 HOH A 64 357 67 HOH HOH . 
F 4 HOH A 65 358 68 HOH HOH . 
F 4 HOH A 66 359 69 HOH HOH . 
F 4 HOH A 67 360 70 HOH HOH . 
F 4 HOH A 68 361 71 HOH HOH . 
F 4 HOH A 69 362 72 HOH HOH . 
F 4 HOH A 70 363 73 HOH HOH . 
F 4 HOH A 71 364 74 HOH HOH . 
F 4 HOH A 72 365 75 HOH HOH . 
F 4 HOH A 73 366 76 HOH HOH . 
F 4 HOH A 74 367 77 HOH HOH . 
F 4 HOH A 75 368 78 HOH HOH . 
F 4 HOH A 76 369 79 HOH HOH . 
F 4 HOH A 77 370 80 HOH HOH . 
F 4 HOH A 78 371 81 HOH HOH . 
F 4 HOH A 79 372 82 HOH HOH . 
F 4 HOH A 80 373 83 HOH HOH . 
F 4 HOH A 81 374 84 HOH HOH . 
F 4 HOH A 82 375 85 HOH HOH . 
F 4 HOH A 83 376 86 HOH HOH . 
F 4 HOH A 84 377 87 HOH HOH . 
F 4 HOH A 85 378 88 HOH HOH . 
F 4 HOH A 86 379 89 HOH HOH . 
F 4 HOH A 87 380 90 HOH HOH . 
F 4 HOH A 88 381 91 HOH HOH . 
F 4 HOH A 89 382 92 HOH HOH . 
F 4 HOH A 90 383 93 HOH HOH . 
F 4 HOH A 91 384 94 HOH HOH . 
F 4 HOH A 92 385 95 HOH HOH . 
F 4 HOH A 93 386 96 HOH HOH . 
F 4 HOH A 94 387 97 HOH HOH . 
F 4 HOH A 95 388 98 HOH HOH . 
F 4 HOH A 96 389 99 HOH HOH . 
F 4 HOH A 97 390 100 HOH HOH . 
F 4 HOH A 98 391 101 HOH HOH . 
F 4 HOH A 99 392 102 HOH HOH . 
F 4 HOH A 100 393 103 HOH HOH . 
F 4 HOH A 101 394 104 HOH HOH . 
F 4 HOH A 102 395 105 HOH HOH . 
F 4 HOH A 103 396 106 HOH HOH . 
F 4 HOH A 104 397 107 HOH HOH . 
F 4 HOH A 105 398 108 HOH HOH . 
F 4 HOH A 106 399 109 HOH HOH . 
F 4 HOH A 107 400 110 HOH HOH . 
F 4 HOH A 108 401 111 HOH HOH . 
F 4 HOH A 109 402 113 HOH HOH . 
F 4 HOH A 110 403 114 HOH HOH . 
F 4 HOH A 111 404 115 HOH HOH . 
F 4 HOH A 112 405 116 HOH HOH . 
F 4 HOH A 113 406 117 HOH HOH . 
F 4 HOH A 114 407 118 HOH HOH . 
F 4 HOH A 115 408 119 HOH HOH . 
F 4 HOH A 116 409 120 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 C8E . . . D 3 -22.5 35.162 40.316 1 79.77 ? C1 C8E 292 A 1 
HETATM 2 C C2 C8E . . . D 3 -21.215 34.616 40.813 1 80.38 ? C2 C8E 292 A 1 
HETATM 3 C C3 C8E . . . D 3 -20.6 33.703 39.875 1 80.58 ? C3 C8E 292 A 1 
HETATM 4 C C4 C8E . . . D 3 -19.783 34.544 38.96 1 80.98 ? C4 C8E 292 A 1 
HETATM 5 C C5 C8E . . . D 3 -18.786 33.567 38.454 1 82.11 ? C5 C8E 292 A 1 
HETATM 6 C C6 C8E . . . D 3 -18.98 33.401 37.036 1 83.79 ? C6 C8E 292 A 1 
HETATM 7 C C7 C8E . . . D 3 -18.446 32.062 36.826 1 85.37 ? C7 C8E 292 A 1 
HETATM 8 C C8 C8E . . . D 3 -18.714 31.703 35.404 1 87.04 ? C8 C8E 292 A 1 
HETATM 9 O O9 C8E . . . D 3 -17.775 30.904 34.677 1 88.63 ? O9 C8E 292 A 1 
HETATM 10 C C10 C8E . . . D 3 -17.762 29.511 34.975 1 89.91 ? C10 C8E 292 A 1 
HETATM 11 C C11 C8E . . . D 3 -16.444 28.973 34.496 1 91.04 ? C11 C8E 292 A 1 
HETATM 12 O O12 C8E . . . D 3 -16.467 28.765 33.048 1 91.85 ? O12 C8E 292 A 1 
HETATM 13 C C13 C8E . . . D 3 -15.87 27.511 32.647 1 93.04 ? C13 C8E 292 A 1 
HETATM 14 C C14 C8E . . . D 3 -16.564 26.358 31.854 1 94.71 ? C14 C8E 292 A 1 
HETATM 15 O O15 C8E . . . D 3 -15.955 25.034 31.642 1 96.45 ? O15 C8E 292 A 1 
HETATM 16 C C16 C8E . . . D 3 -15.66 24.827 30.235 1 97.42 ? C16 C8E 292 A 1 
HETATM 17 C C17 C8E . . . D 3 -16.819 24.257 29.411 1 98.3 ? C17 C8E 292 A 1 
HETATM 18 O O18 C8E . . . D 3 -16.764 23.557 28.155 1 98.66 ? O18 C8E 292 A 1 
HETATM 19 C C19 C8E . . . D 3 -16.091 24.169 27.027 1 98.46 ? C19 C8E 292 A 1 
HETATM 20 C C20 C8E . . . D 3 -16.793 25.054 25.91 1 97.84 ? C20 C8E 292 A 1 
HETATM 21 O O21 C8E . . . D 3 -17.269 26.324 26.424 1 97.65 ? O21 C8E 292 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           728 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           21 
#