data_3PS2 # _model_server_result.job_id 6XxQHx6da4IPBVErmMrkeA _model_server_result.datetime_utc '2024-12-03 15:43:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ps2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 3PS2 # _exptl.entry_id 3PS2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 375.377 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[4-(3-aminophenyl)buta-1,3-diyn-1-yl]-N-[(2S,3R)-3-hydroxy-1-nitroso-1-oxobutan-2-yl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PS2 _cell.length_a 107.449 _cell.length_b 107.449 _cell.length_c 53.422 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PS2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 79 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc2 A NE2 HIS 238 A HIS 238 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc3 A OD1 ASP 242 A ASP 242 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc4 A OD2 ASP 242 A ASP 242 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc5 B ZN ZN . A ZN 301 1_555 C O01 ZH4 . A ZH4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc6 B ZN ZN . A ZN 301 1_555 C O04 ZH4 . A ZH4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? # _chem_comp.formula 'C21 H17 N3 O4' _chem_comp.formula_weight 375.377 _chem_comp.id ZH4 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[4-(3-aminophenyl)buta-1,3-diyn-1-yl]-N-[(2S,3R)-3-hydroxy-1-nitroso-1-oxobutan-2-yl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C10 ZH4 doub 420 n y C10 C09 ZH4 sing 421 n y C10 H10 ZH4 sing 422 n n C14 C13 ZH4 trip 423 n n C13 C12 ZH4 sing 424 n n C16 C15 ZH4 trip 425 n n C15 C14 ZH4 sing 426 n n C22 C17 ZH4 doub 427 n y C18 C17 ZH4 sing 428 n y C17 C16 ZH4 sing 429 n n C20 C21 ZH4 doub 430 n y C20 C19 ZH4 sing 431 n y C20 H20 ZH4 sing 432 n n N23 C21 ZH4 sing 433 n n C21 C22 ZH4 sing 434 n y C22 H22 ZH4 sing 435 n n C12 C24 ZH4 doub 436 n y C24 C25 ZH4 sing 437 n y C24 H24 ZH4 sing 438 n n C05 C26 ZH4 sing 439 n n C28 C26 ZH4 sing 440 n n C26 O27 ZH4 sing 441 n n C26 H26 ZH4 sing 442 n n C28 H28 ZH4 sing 443 n n C28 H28A ZH4 sing 444 n n C28 H28B ZH4 sing 445 n n O01 C02 ZH4 doub 446 n n C05 C02 ZH4 sing 447 n n C02 N03 ZH4 sing 448 n n O04 N03 ZH4 doub 449 n n N06 C05 ZH4 sing 450 n n C05 H05 ZH4 sing 451 n n C07 N06 ZH4 sing 452 n n N06 HN06 ZH4 sing 453 n n C09 C07 ZH4 sing 454 n n C07 O08 ZH4 doub 455 n n C25 C09 ZH4 doub 456 n y C12 C11 ZH4 sing 457 n y C11 H11 ZH4 sing 458 n n C19 C18 ZH4 doub 459 n y C18 H18 ZH4 sing 460 n n C19 H19 ZH4 sing 461 n n N23 HN23 ZH4 sing 462 n n N23 HN2A ZH4 sing 463 n n C25 H25 ZH4 sing 464 n n O27 HO27 ZH4 sing 465 n n # _atom_sites.entry_id 3PS2 _atom_sites.fract_transf_matrix[1][1] 0.009307 _atom_sites.fract_transf_matrix[1][2] 0.005373 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010746 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 3 ZH4 A 1 401 401 ZH4 ZH4 . D 4 UKW A 1 501 501 UKW UKW . E 5 DMS A 1 601 601 DMS DMS . F 5 DMS A 1 602 602 DMS DMS . G 5 DMS A 1 603 603 DMS DMS . H 6 SO4 A 1 701 701 SO4 SO4 . I 6 SO4 A 1 702 702 SO4 SO4 . J 6 SO4 A 1 703 703 SO4 SO4 . K 7 HOH A 1 1001 1001 HOH HOH . K 7 HOH A 2 1002 1002 HOH HOH . K 7 HOH A 3 1003 1003 HOH HOH . K 7 HOH A 4 1004 1004 HOH HOH . K 7 HOH A 5 1005 1005 HOH HOH . K 7 HOH A 6 1006 1006 HOH HOH . K 7 HOH A 7 1007 1007 HOH HOH . K 7 HOH A 8 1008 1008 HOH HOH . K 7 HOH A 9 1009 1009 HOH HOH . K 7 HOH A 10 1010 1010 HOH HOH . K 7 HOH A 11 1011 1011 HOH HOH . K 7 HOH A 12 1012 1012 HOH HOH . K 7 HOH A 13 1013 1013 HOH HOH . K 7 HOH A 14 1014 1014 HOH HOH . K 7 HOH A 15 1015 1015 HOH HOH . K 7 HOH A 16 1016 1016 HOH HOH . K 7 HOH A 17 1017 1017 HOH HOH . K 7 HOH A 18 1018 1018 HOH HOH . K 7 HOH A 19 1019 1019 HOH HOH . K 7 HOH A 20 1020 1020 HOH HOH . K 7 HOH A 21 1021 1021 HOH HOH . K 7 HOH A 22 1022 1022 HOH HOH . K 7 HOH A 23 1023 1023 HOH HOH . K 7 HOH A 24 1024 1024 HOH HOH . K 7 HOH A 25 1025 1025 HOH HOH . K 7 HOH A 26 1026 1026 HOH HOH . K 7 HOH A 27 1027 1027 HOH HOH . K 7 HOH A 28 1028 1028 HOH HOH . K 7 HOH A 29 1029 1029 HOH HOH . K 7 HOH A 30 1030 1030 HOH HOH . K 7 HOH A 31 1031 1031 HOH HOH . K 7 HOH A 32 1032 1032 HOH HOH . K 7 HOH A 33 1033 1033 HOH HOH . K 7 HOH A 34 1034 1034 HOH HOH . K 7 HOH A 35 1035 1035 HOH HOH . K 7 HOH A 36 1036 1036 HOH HOH . K 7 HOH A 37 1037 1037 HOH HOH . K 7 HOH A 38 1038 1038 HOH HOH . K 7 HOH A 39 1039 1039 HOH HOH . K 7 HOH A 40 1040 1040 HOH HOH . K 7 HOH A 41 1041 1041 HOH HOH . K 7 HOH A 42 1042 1042 HOH HOH . K 7 HOH A 43 1043 1043 HOH HOH . K 7 HOH A 44 1044 1044 HOH HOH . K 7 HOH A 45 1045 1045 HOH HOH . K 7 HOH A 46 1046 1046 HOH HOH . K 7 HOH A 47 1047 1047 HOH HOH . K 7 HOH A 48 1048 1048 HOH HOH . K 7 HOH A 49 1049 1049 HOH HOH . K 7 HOH A 50 1050 1050 HOH HOH . K 7 HOH A 51 1051 1051 HOH HOH . K 7 HOH A 52 1052 1052 HOH HOH . K 7 HOH A 53 1053 1053 HOH HOH . K 7 HOH A 54 1054 1054 HOH HOH . K 7 HOH A 55 1055 1055 HOH HOH . K 7 HOH A 56 1056 1056 HOH HOH . K 7 HOH A 57 1057 1057 HOH HOH . K 7 HOH A 58 1058 1058 HOH HOH . K 7 HOH A 59 1059 1059 HOH HOH . K 7 HOH A 60 1060 1060 HOH HOH . K 7 HOH A 61 1061 1061 HOH HOH . K 7 HOH A 62 1062 1062 HOH HOH . K 7 HOH A 63 1063 1063 HOH HOH . K 7 HOH A 64 1064 1064 HOH HOH . K 7 HOH A 65 1065 1065 HOH HOH . K 7 HOH A 66 1066 1066 HOH HOH . K 7 HOH A 67 1067 1067 HOH HOH . K 7 HOH A 68 1068 1068 HOH HOH . K 7 HOH A 69 1069 1069 HOH HOH . K 7 HOH A 70 1070 1070 HOH HOH . K 7 HOH A 71 1071 1071 HOH HOH . K 7 HOH A 72 1072 1072 HOH HOH . K 7 HOH A 73 1073 1073 HOH HOH . K 7 HOH A 74 1074 1074 HOH HOH . K 7 HOH A 75 1075 1075 HOH HOH . K 7 HOH A 76 1076 1076 HOH HOH . K 7 HOH A 77 1077 1077 HOH HOH . K 7 HOH A 78 1078 1078 HOH HOH . K 7 HOH A 79 1079 1079 HOH HOH . K 7 HOH A 80 1080 1080 HOH HOH . K 7 HOH A 81 1081 1081 HOH HOH . K 7 HOH A 82 1082 1082 HOH HOH . K 7 HOH A 83 1083 1083 HOH HOH . K 7 HOH A 84 1084 1084 HOH HOH . K 7 HOH A 85 1085 1085 HOH HOH . K 7 HOH A 86 1086 1086 HOH HOH . K 7 HOH A 87 1087 1087 HOH HOH . K 7 HOH A 88 1088 1088 HOH HOH . K 7 HOH A 89 1089 1089 HOH HOH . K 7 HOH A 90 1090 1090 HOH HOH . K 7 HOH A 91 1091 1091 HOH HOH . K 7 HOH A 92 1092 1092 HOH HOH . K 7 HOH A 93 1093 1093 HOH HOH . K 7 HOH A 94 1094 1094 HOH HOH . K 7 HOH A 95 1095 1095 HOH HOH . K 7 HOH A 96 1096 1096 HOH HOH . K 7 HOH A 97 1097 1097 HOH HOH . K 7 HOH A 98 1098 1098 HOH HOH . K 7 HOH A 99 1099 1099 HOH HOH . K 7 HOH A 100 1100 1100 HOH HOH . K 7 HOH A 101 1101 1101 HOH HOH . K 7 HOH A 102 1102 1102 HOH HOH . K 7 HOH A 103 1103 1103 HOH HOH . K 7 HOH A 104 1104 1104 HOH HOH . K 7 HOH A 105 1105 1105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 ZH4 . . . C 3 32.602 -7.921 -8.774 1 45.39 ? C10 ZH4 401 A 1 HETATM 2 C C13 ZH4 . . . C 3 31.155 -7.453 -12.221 1 29.9 ? C13 ZH4 401 A 1 HETATM 3 C C15 ZH4 . . . C 3 30.461 -6.129 -14.481 1 25.63 ? C15 ZH4 401 A 1 HETATM 4 C C17 ZH4 . . . C 3 29.747 -4.734 -16.687 1 42.31 ? C17 ZH4 401 A 1 HETATM 5 C C20 ZH4 . . . C 3 29.082 -3.216 -18.931 1 46.15 ? C20 ZH4 401 A 1 HETATM 6 C C21 ZH4 . . . C 3 30.418 -3.308 -18.526 1 41.87 ? C21 ZH4 401 A 1 HETATM 7 C C22 ZH4 . . . C 3 30.747 -4.066 -17.397 1 40.44 ? C22 ZH4 401 A 1 HETATM 8 C C24 ZH4 . . . C 3 31.144 -9.455 -10.658 1 54.05 ? C24 ZH4 401 A 1 HETATM 9 C C26 ZH4 . . . C 3 30.955 -10.323 -4.183 1 32.59 ? C26 ZH4 401 A 1 HETATM 10 C C28 ZH4 . . . C 3 29.637 -9.82 -4.555 1 37.08 ? C28 ZH4 401 A 1 HETATM 11 O O01 ZH4 . . . C 3 30.483 -13.011 -5.855 1 31.21 ? O01 ZH4 401 A 1 HETATM 12 C C02 ZH4 . . . C 3 31.366 -12.516 -5.174 1 19.72 ? C02 ZH4 401 A 1 HETATM 13 N N03 ZH4 . . . C 3 32.241 -13.392 -4.468 1 23.62 ? N03 ZH4 401 A 1 HETATM 14 O O04 ZH4 . . . C 3 31.983 -14.666 -4.506 1 30.05 ? O04 ZH4 401 A 1 HETATM 15 C C05 ZH4 . . . C 3 31.619 -11.074 -5.212 1 30.38 ? C05 ZH4 401 A 1 HETATM 16 N N06 ZH4 . . . C 3 31.473 -10.496 -6.482 1 29.73 ? N06 ZH4 401 A 1 HETATM 17 C C07 ZH4 . . . C 3 32.548 -9.826 -7.149 1 34.88 ? C07 ZH4 401 A 1 HETATM 18 O O08 ZH4 . . . C 3 33.6 -9.58 -6.582 1 41.42 ? O08 ZH4 401 A 1 HETATM 19 C C09 ZH4 . . . C 3 32.241 -9.239 -8.487 1 39.75 ? C09 ZH4 401 A 1 HETATM 20 C C11 ZH4 . . . C 3 32.233 -7.38 -10.009 1 40.65 ? C11 ZH4 401 A 1 HETATM 21 C C12 ZH4 . . . C 3 31.515 -8.136 -10.942 1 32.43 ? C12 ZH4 401 A 1 HETATM 22 C C14 ZH4 . . . C 3 30.848 -6.865 -13.241 1 25.33 ? C14 ZH4 401 A 1 HETATM 23 C C16 ZH4 . . . C 3 30.141 -5.515 -15.479 1 37.27 ? C16 ZH4 401 A 1 HETATM 24 C C18 ZH4 . . . C 3 28.406 -4.639 -17.08 1 33.62 ? C18 ZH4 401 A 1 HETATM 25 C C19 ZH4 . . . C 3 28.08 -3.88 -18.21 1 48.38 ? C19 ZH4 401 A 1 HETATM 26 N N23 ZH4 . . . C 3 31.434 -2.597 -19.235 1 41.59 ? N23 ZH4 401 A 1 HETATM 27 C C25 ZH4 . . . C 3 31.516 -9.999 -9.417 1 50.97 ? C25 ZH4 401 A 1 HETATM 28 O O27 ZH4 . . . C 3 31.005 -10.87 -2.956 1 38.76 ? O27 ZH4 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 28 #