data_3PS3 # _model_server_result.job_id zrxQOzUSfGyx5kTkBVg7BA _model_server_result.datetime_utc '2024-12-03 15:30:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ps3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 3PS3 # _exptl.entry_id 3PS3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 375.377 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[4-(4-aminophenyl)buta-1,3-diyn-1-yl]-N-[(2S,3S)-3-hydroxy-1-nitroso-1-oxobutan-2-yl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PS3 _cell.length_a 107.745 _cell.length_b 107.745 _cell.length_c 53.509 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PS3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 79 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc2 A NE2 HIS 238 A HIS 238 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc3 A OD1 ASP 242 A ASP 242 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc4 A OD2 ASP 242 A ASP 242 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc5 B ZN ZN . A ZN 301 1_555 C O01 L53 . A L53 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc6 B ZN ZN . A ZN 301 1_555 C O04 L53 . A L53 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? # _chem_comp.formula 'C21 H17 N3 O4' _chem_comp.formula_weight 375.377 _chem_comp.id L53 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[4-(4-aminophenyl)buta-1,3-diyn-1-yl]-N-[(2S,3S)-3-hydroxy-1-nitroso-1-oxobutan-2-yl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 O01 L53 doub 182 n n N03 C02 L53 sing 183 n n C05 C02 L53 sing 184 n n N03 O04 L53 doub 185 n n C26 C05 L53 sing 186 n n C05 N06 L53 sing 187 n n C05 H05 L53 sing 188 n n N06 C07 L53 sing 189 n n N06 HN06 L53 sing 190 n n O08 C07 L53 doub 191 n n C07 C09 L53 sing 192 n n C09 C25 L53 doub 193 n y C09 C10 L53 sing 194 n y C10 C11 L53 doub 195 n y C10 H10 L53 sing 196 n n C11 C12 L53 sing 197 n y C11 H11 L53 sing 198 n n C24 C12 L53 doub 199 n y C12 C13 L53 sing 200 n n C13 C14 L53 trip 201 n n C14 C15 L53 sing 202 n n C15 C16 L53 trip 203 n n C16 C17 L53 sing 204 n n C17 C18 L53 doub 205 n y C17 C23 L53 sing 206 n y C18 C19 L53 sing 207 n y C18 H18 L53 sing 208 n n C19 C20 L53 doub 209 n y C19 H19 L53 sing 210 n n C22 C20 L53 sing 211 n y C20 N21 L53 sing 212 n n N21 HN21 L53 sing 213 n n N21 HN2A L53 sing 214 n n C23 C22 L53 doub 215 n y C22 H22 L53 sing 216 n n C23 H23 L53 sing 217 n n C25 C24 L53 sing 218 n y C24 H24 L53 sing 219 n n C25 H25 L53 sing 220 n n O27 C26 L53 sing 221 n n C26 C28 L53 sing 222 n n C26 H26 L53 sing 223 n n O27 HO27 L53 sing 224 n n C28 H28 L53 sing 225 n n C28 H28A L53 sing 226 n n C28 H28B L53 sing 227 n n # _atom_sites.entry_id 3PS3 _atom_sites.fract_transf_matrix[1][1] 0.009281 _atom_sites.fract_transf_matrix[1][2] 0.005358 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018688 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 3 L53 A 1 401 401 L53 L53 . D 4 UKW A 1 501 501 UKW UKW . E 5 DMS A 1 601 601 DMS DMS . F 5 DMS A 1 602 602 DMS DMS . G 6 SO4 A 1 701 701 SO4 SO4 . H 6 SO4 A 1 702 702 SO4 SO4 . I 6 SO4 A 1 703 703 SO4 SO4 . J 6 SO4 A 1 704 704 SO4 SO4 . K 6 SO4 A 1 705 705 SO4 SO4 . L 7 HOH A 1 1001 1001 HOH HOH . L 7 HOH A 2 1002 1002 HOH HOH . L 7 HOH A 3 1003 1003 HOH HOH . L 7 HOH A 4 1004 1004 HOH HOH . L 7 HOH A 5 1005 1005 HOH HOH . L 7 HOH A 6 1006 1006 HOH HOH . L 7 HOH A 7 1007 1007 HOH HOH . L 7 HOH A 8 1008 1008 HOH HOH . L 7 HOH A 9 1009 1009 HOH HOH . L 7 HOH A 10 1010 1010 HOH HOH . L 7 HOH A 11 1011 1011 HOH HOH . L 7 HOH A 12 1012 1012 HOH HOH . L 7 HOH A 13 1013 1013 HOH HOH . L 7 HOH A 14 1014 1014 HOH HOH . L 7 HOH A 15 1015 1015 HOH HOH . L 7 HOH A 16 1016 1016 HOH HOH . L 7 HOH A 17 1017 1017 HOH HOH . L 7 HOH A 18 1018 1018 HOH HOH . L 7 HOH A 19 1019 1019 HOH HOH . L 7 HOH A 20 1020 1020 HOH HOH . L 7 HOH A 21 1021 1021 HOH HOH . L 7 HOH A 22 1022 1022 HOH HOH . L 7 HOH A 23 1023 1023 HOH HOH . L 7 HOH A 24 1024 1024 HOH HOH . L 7 HOH A 25 1025 1025 HOH HOH . L 7 HOH A 26 1026 1026 HOH HOH . L 7 HOH A 27 1027 1027 HOH HOH . L 7 HOH A 28 1028 1028 HOH HOH . L 7 HOH A 29 1029 1029 HOH HOH . L 7 HOH A 30 1030 1030 HOH HOH . L 7 HOH A 31 1031 1031 HOH HOH . L 7 HOH A 32 1032 1032 HOH HOH . L 7 HOH A 33 1033 1033 HOH HOH . L 7 HOH A 34 1034 1034 HOH HOH . L 7 HOH A 35 1035 1035 HOH HOH . L 7 HOH A 36 1036 1036 HOH HOH . L 7 HOH A 37 1037 1037 HOH HOH . L 7 HOH A 38 1038 1038 HOH HOH . L 7 HOH A 39 1039 1039 HOH HOH . L 7 HOH A 40 1040 1040 HOH HOH . L 7 HOH A 41 1041 1041 HOH HOH . L 7 HOH A 42 1042 1042 HOH HOH . L 7 HOH A 43 1043 1043 HOH HOH . L 7 HOH A 44 1044 1044 HOH HOH . L 7 HOH A 45 1045 1045 HOH HOH . L 7 HOH A 46 1046 1046 HOH HOH . L 7 HOH A 47 1047 1047 HOH HOH . L 7 HOH A 48 1048 1048 HOH HOH . L 7 HOH A 49 1049 1049 HOH HOH . L 7 HOH A 50 1050 1050 HOH HOH . L 7 HOH A 51 1051 1051 HOH HOH . L 7 HOH A 52 1052 1052 HOH HOH . L 7 HOH A 53 1053 1053 HOH HOH . L 7 HOH A 54 1054 1054 HOH HOH . L 7 HOH A 55 1055 1055 HOH HOH . L 7 HOH A 56 1056 1056 HOH HOH . L 7 HOH A 57 1057 1057 HOH HOH . L 7 HOH A 58 1058 1058 HOH HOH . L 7 HOH A 59 1059 1059 HOH HOH . L 7 HOH A 60 1060 1060 HOH HOH . L 7 HOH A 61 1061 1061 HOH HOH . L 7 HOH A 62 1062 1062 HOH HOH . L 7 HOH A 63 1063 1063 HOH HOH . L 7 HOH A 64 1064 1064 HOH HOH . L 7 HOH A 65 1065 1065 HOH HOH . L 7 HOH A 66 1066 1066 HOH HOH . L 7 HOH A 67 1067 1067 HOH HOH . L 7 HOH A 68 1068 1068 HOH HOH . L 7 HOH A 69 1069 1069 HOH HOH . L 7 HOH A 70 1070 1070 HOH HOH . L 7 HOH A 71 1071 1071 HOH HOH . L 7 HOH A 72 1072 1072 HOH HOH . L 7 HOH A 73 1073 1073 HOH HOH . L 7 HOH A 74 1074 1074 HOH HOH . L 7 HOH A 75 1075 1075 HOH HOH . L 7 HOH A 76 1076 1076 HOH HOH . L 7 HOH A 77 1077 1077 HOH HOH . L 7 HOH A 78 1078 1078 HOH HOH . L 7 HOH A 79 1079 1079 HOH HOH . L 7 HOH A 80 1080 1080 HOH HOH . L 7 HOH A 81 1081 1081 HOH HOH . L 7 HOH A 82 1082 1082 HOH HOH . L 7 HOH A 83 1083 1083 HOH HOH . L 7 HOH A 84 1084 1084 HOH HOH . L 7 HOH A 85 1085 1085 HOH HOH . L 7 HOH A 86 1086 1086 HOH HOH . L 7 HOH A 87 1087 1087 HOH HOH . L 7 HOH A 88 1088 1088 HOH HOH . L 7 HOH A 89 1089 1089 HOH HOH . L 7 HOH A 90 1090 1090 HOH HOH . L 7 HOH A 91 1091 1091 HOH HOH . L 7 HOH A 92 1092 1092 HOH HOH . L 7 HOH A 93 1093 1093 HOH HOH . L 7 HOH A 94 1094 1094 HOH HOH . L 7 HOH A 95 1095 1095 HOH HOH . L 7 HOH A 96 1096 1096 HOH HOH . L 7 HOH A 97 1097 1097 HOH HOH . L 7 HOH A 98 1098 1098 HOH HOH . L 7 HOH A 99 1099 1099 HOH HOH . L 7 HOH A 100 1100 1100 HOH HOH . L 7 HOH A 101 1101 1101 HOH HOH . L 7 HOH A 102 1102 1102 HOH HOH . L 7 HOH A 103 1103 1103 HOH HOH . L 7 HOH A 104 1104 1104 HOH HOH . L 7 HOH A 105 1105 1105 HOH HOH . L 7 HOH A 106 1106 1106 HOH HOH . L 7 HOH A 107 1107 1107 HOH HOH . L 7 HOH A 108 1108 1108 HOH HOH . L 7 HOH A 109 1109 1109 HOH HOH . L 7 HOH A 110 1110 1110 HOH HOH . L 7 HOH A 111 1111 1111 HOH HOH . L 7 HOH A 112 1112 1112 HOH HOH . L 7 HOH A 113 1113 1113 HOH HOH . L 7 HOH A 114 1114 1114 HOH HOH . L 7 HOH A 115 1115 1115 HOH HOH . L 7 HOH A 116 1116 1116 HOH HOH . L 7 HOH A 117 1117 1117 HOH HOH . L 7 HOH A 118 1118 1118 HOH HOH . L 7 HOH A 119 1119 1119 HOH HOH . L 7 HOH A 120 1120 1120 HOH HOH . L 7 HOH A 121 1121 1121 HOH HOH . L 7 HOH A 122 1122 1122 HOH HOH . L 7 HOH A 123 1123 1123 HOH HOH . L 7 HOH A 124 1124 1124 HOH HOH . L 7 HOH A 125 1125 1125 HOH HOH . L 7 HOH A 126 1126 1126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 L53 . . . C 3 26.454 -19.917 3.046 1 27.29 ? O01 L53 401 A 1 HETATM 2 C C02 L53 . . . C 3 26.515 -21.058 2.621 1 28.84 ? C02 L53 401 A 1 HETATM 3 N N03 L53 . . . C 3 27.741 -21.476 2.039 1 24.86 ? N03 L53 401 A 1 HETATM 4 O O04 L53 . . . C 3 28.753 -20.654 2.106 1 33.97 ? O04 L53 401 A 1 HETATM 5 C C05 L53 . . . C 3 25.297 -21.839 2.429 1 33.43 ? C05 L53 401 A 1 HETATM 6 N N06 L53 . . . C 3 24.689 -22.064 3.656 1 31.12 ? N06 L53 401 A 1 HETATM 7 C C07 L53 . . . C 3 24.721 -23.339 4.332 1 33.61 ? C07 L53 401 A 1 HETATM 8 O O08 L53 . . . C 3 25.089 -24.352 3.763 1 38.76 ? O08 L53 401 A 1 HETATM 9 C C09 L53 . . . C 3 24.041 -23.4 5.658 1 45.76 ? C09 L53 401 A 1 HETATM 10 C C10 L53 . . . C 3 24.191 -24.499 6.527 1 57.28 ? C10 L53 401 A 1 HETATM 11 C C11 L53 . . . C 3 23.523 -24.488 7.761 1 58.97 ? C11 L53 401 A 1 HETATM 12 C C12 L53 . . . C 3 22.731 -23.404 8.123 1 40.03 ? C12 L53 401 A 1 HETATM 13 C C13 L53 . . . C 3 22.016 -23.387 9.437 1 28.96 ? C13 L53 401 A 1 HETATM 14 C C14 L53 . . . C 3 21.386 -23.387 10.49 1 27.74 ? C14 L53 401 A 1 HETATM 15 C C15 L53 . . . C 3 20.572 -23.412 11.739 1 26.34 ? C15 L53 401 A 1 HETATM 16 C C16 L53 . . . C 3 19.886 -23.443 12.754 1 34.91 ? C16 L53 401 A 1 HETATM 17 C C17 L53 . . . C 3 19.03 -23.49 13.973 1 42.55 ? C17 L53 401 A 1 HETATM 18 C C18 L53 . . . C 3 18.214 -22.417 14.327 1 39.59 ? C18 L53 401 A 1 HETATM 19 C C19 L53 . . . C 3 17.398 -22.511 15.469 1 52.13 ? C19 L53 401 A 1 HETATM 20 C C20 L53 . . . C 3 17.392 -23.691 16.235 1 53.41 ? C20 L53 401 A 1 HETATM 21 N N21 L53 . . . C 3 16.552 -23.798 17.392 1 57.85 ? N21 L53 401 A 1 HETATM 22 C C22 L53 . . . C 3 18.198 -24.771 15.865 1 52.82 ? C22 L53 401 A 1 HETATM 23 C C23 L53 . . . C 3 19.011 -24.68 14.729 1 50.07 ? C23 L53 401 A 1 HETATM 24 C C24 L53 . . . C 3 22.579 -22.315 7.251 1 51.66 ? C24 L53 401 A 1 HETATM 25 C C25 L53 . . . C 3 23.245 -22.321 6.018 1 48.45 ? C25 L53 401 A 1 HETATM 26 C C26 L53 . . . C 3 24.44 -21.347 1.398 1 38.46 ? C26 L53 401 A 1 HETATM 27 O O27 L53 . . . C 3 23.716 -22.294 0.775 1 50.14 ? O27 L53 401 A 1 HETATM 28 C C28 L53 . . . C 3 23.685 -20.132 1.76 1 39.39 ? C28 L53 401 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #