data_3PS9 # _model_server_result.job_id B5Ul8BYK-wdtgdE-wLKPsQ _model_server_result.datetime_utc '2024-11-26 02:56:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ps9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":670}' # _entry.id 3PS9 # _exptl.entry_id 3PS9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PS9 _cell.length_a 100.063 _cell.length_b 100.063 _cell.length_c 159.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PS9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 368 n n N HN1 SAM sing 369 n n N HN2 SAM sing 370 n n CA C SAM sing 371 n n CA CB SAM sing 372 n n CA HA SAM sing 373 n n C O SAM doub 374 n n C OXT SAM sing 375 n n CB CG SAM sing 376 n n CB HB1 SAM sing 377 n n CB HB2 SAM sing 378 n n CG SD SAM sing 379 n n CG HG1 SAM sing 380 n n CG HG2 SAM sing 381 n n SD CE SAM sing 382 n n SD C5' SAM sing 383 n n CE HE1 SAM sing 384 n n CE HE2 SAM sing 385 n n CE HE3 SAM sing 386 n n C5' C4' SAM sing 387 n n C5' "H5'1" SAM sing 388 n n C5' "H5'2" SAM sing 389 n n C4' O4' SAM sing 390 n n C4' C3' SAM sing 391 n n C4' H4' SAM sing 392 n n O4' C1' SAM sing 393 n n C3' O3' SAM sing 394 n n C3' C2' SAM sing 395 n n C3' H3' SAM sing 396 n n O3' HO3' SAM sing 397 n n C2' O2' SAM sing 398 n n C2' C1' SAM sing 399 n n C2' H2' SAM sing 400 n n O2' HO2' SAM sing 401 n n C1' N9 SAM sing 402 n n C1' H1' SAM sing 403 n n N9 C8 SAM sing 404 n y N9 C4 SAM sing 405 n y C8 N7 SAM doub 406 n y C8 H8 SAM sing 407 n n N7 C5 SAM sing 408 n y C5 C6 SAM sing 409 n y C5 C4 SAM doub 410 n y C6 N6 SAM sing 411 n n C6 N1 SAM doub 412 n y N6 HN61 SAM sing 413 n n N6 HN62 SAM sing 414 n n N1 C2 SAM sing 415 n y C2 N3 SAM doub 416 n y C2 H2 SAM sing 417 n n N3 C4 SAM sing 418 n y # _atom_sites.entry_id 3PS9 _atom_sites.fract_transf_matrix[1][1] 0.009994 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009994 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006282 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 669 1 FAD FAD . C 3 SAM A 1 670 1 SAM SAM . D 4 CL A 1 671 1 CL CL . E 5 HOH A 1 672 2 HOH HOH . E 5 HOH A 2 673 4 HOH HOH . E 5 HOH A 3 674 5 HOH HOH . E 5 HOH A 4 675 6 HOH HOH . E 5 HOH A 5 676 7 HOH HOH . E 5 HOH A 6 677 8 HOH HOH . E 5 HOH A 7 678 9 HOH HOH . E 5 HOH A 8 679 10 HOH HOH . E 5 HOH A 9 680 11 HOH HOH . E 5 HOH A 10 681 12 HOH HOH . E 5 HOH A 11 682 15 HOH HOH . E 5 HOH A 12 683 16 HOH HOH . E 5 HOH A 13 684 17 HOH HOH . E 5 HOH A 14 685 18 HOH HOH . E 5 HOH A 15 686 19 HOH HOH . E 5 HOH A 16 687 20 HOH HOH . E 5 HOH A 17 688 21 HOH HOH . E 5 HOH A 18 689 22 HOH HOH . E 5 HOH A 19 690 24 HOH HOH . E 5 HOH A 20 691 25 HOH HOH . E 5 HOH A 21 692 27 HOH HOH . E 5 HOH A 22 693 28 HOH HOH . E 5 HOH A 23 694 30 HOH HOH . E 5 HOH A 24 695 31 HOH HOH . E 5 HOH A 25 696 33 HOH HOH . E 5 HOH A 26 697 34 HOH HOH . E 5 HOH A 27 698 35 HOH HOH . E 5 HOH A 28 699 36 HOH HOH . E 5 HOH A 29 700 37 HOH HOH . E 5 HOH A 30 701 38 HOH HOH . E 5 HOH A 31 702 39 HOH HOH . E 5 HOH A 32 703 40 HOH HOH . E 5 HOH A 33 704 41 HOH HOH . E 5 HOH A 34 705 43 HOH HOH . E 5 HOH A 35 706 45 HOH HOH . E 5 HOH A 36 707 46 HOH HOH . E 5 HOH A 37 708 47 HOH HOH . E 5 HOH A 38 709 48 HOH HOH . E 5 HOH A 39 710 49 HOH HOH . E 5 HOH A 40 711 50 HOH HOH . E 5 HOH A 41 712 51 HOH HOH . E 5 HOH A 42 713 52 HOH HOH . E 5 HOH A 43 714 53 HOH HOH . E 5 HOH A 44 715 54 HOH HOH . E 5 HOH A 45 716 56 HOH HOH . E 5 HOH A 46 717 57 HOH HOH . E 5 HOH A 47 718 59 HOH HOH . E 5 HOH A 48 719 60 HOH HOH . E 5 HOH A 49 720 61 HOH HOH . E 5 HOH A 50 721 62 HOH HOH . E 5 HOH A 51 722 63 HOH HOH . E 5 HOH A 52 723 64 HOH HOH . E 5 HOH A 53 724 66 HOH HOH . E 5 HOH A 54 725 68 HOH HOH . E 5 HOH A 55 726 69 HOH HOH . E 5 HOH A 56 727 70 HOH HOH . E 5 HOH A 57 728 71 HOH HOH . E 5 HOH A 58 729 72 HOH HOH . E 5 HOH A 59 730 73 HOH HOH . E 5 HOH A 60 731 74 HOH HOH . E 5 HOH A 61 732 75 HOH HOH . E 5 HOH A 62 733 76 HOH HOH . E 5 HOH A 63 734 77 HOH HOH . E 5 HOH A 64 735 78 HOH HOH . E 5 HOH A 65 736 79 HOH HOH . E 5 HOH A 66 737 82 HOH HOH . E 5 HOH A 67 738 83 HOH HOH . E 5 HOH A 68 739 84 HOH HOH . E 5 HOH A 69 740 85 HOH HOH . E 5 HOH A 70 741 86 HOH HOH . E 5 HOH A 71 742 87 HOH HOH . E 5 HOH A 72 743 88 HOH HOH . E 5 HOH A 73 744 89 HOH HOH . E 5 HOH A 74 745 91 HOH HOH . E 5 HOH A 75 746 92 HOH HOH . E 5 HOH A 76 747 93 HOH HOH . E 5 HOH A 77 748 94 HOH HOH . E 5 HOH A 78 749 95 HOH HOH . E 5 HOH A 79 750 96 HOH HOH . E 5 HOH A 80 751 99 HOH HOH . E 5 HOH A 81 752 100 HOH HOH . E 5 HOH A 82 753 101 HOH HOH . E 5 HOH A 83 754 102 HOH HOH . E 5 HOH A 84 755 103 HOH HOH . E 5 HOH A 85 756 104 HOH HOH . E 5 HOH A 86 757 107 HOH HOH . E 5 HOH A 87 758 108 HOH HOH . E 5 HOH A 88 759 110 HOH HOH . E 5 HOH A 89 760 111 HOH HOH . E 5 HOH A 90 761 112 HOH HOH . E 5 HOH A 91 762 113 HOH HOH . E 5 HOH A 92 763 114 HOH HOH . E 5 HOH A 93 764 115 HOH HOH . E 5 HOH A 94 765 116 HOH HOH . E 5 HOH A 95 766 118 HOH HOH . E 5 HOH A 96 767 119 HOH HOH . E 5 HOH A 97 768 121 HOH HOH . E 5 HOH A 98 769 123 HOH HOH . E 5 HOH A 99 770 124 HOH HOH . E 5 HOH A 100 771 126 HOH HOH . E 5 HOH A 101 772 132 HOH HOH . E 5 HOH A 102 773 133 HOH HOH . E 5 HOH A 103 774 135 HOH HOH . E 5 HOH A 104 775 136 HOH HOH . E 5 HOH A 105 776 138 HOH HOH . E 5 HOH A 106 777 140 HOH HOH . E 5 HOH A 107 778 141 HOH HOH . E 5 HOH A 108 779 142 HOH HOH . E 5 HOH A 109 780 146 HOH HOH . E 5 HOH A 110 781 147 HOH HOH . E 5 HOH A 111 782 148 HOH HOH . E 5 HOH A 112 783 149 HOH HOH . E 5 HOH A 113 784 150 HOH HOH . E 5 HOH A 114 785 153 HOH HOH . E 5 HOH A 115 786 154 HOH HOH . E 5 HOH A 116 787 155 HOH HOH . E 5 HOH A 117 788 156 HOH HOH . E 5 HOH A 118 789 157 HOH HOH . E 5 HOH A 119 790 160 HOH HOH . E 5 HOH A 120 791 161 HOH HOH . E 5 HOH A 121 792 164 HOH HOH . E 5 HOH A 122 793 167 HOH HOH . E 5 HOH A 123 794 170 HOH HOH . E 5 HOH A 124 795 171 HOH HOH . E 5 HOH A 125 796 174 HOH HOH . E 5 HOH A 126 797 176 HOH HOH . E 5 HOH A 127 798 177 HOH HOH . E 5 HOH A 128 799 179 HOH HOH . E 5 HOH A 129 800 181 HOH HOH . E 5 HOH A 130 801 182 HOH HOH . E 5 HOH A 131 802 183 HOH HOH . E 5 HOH A 132 803 186 HOH HOH . E 5 HOH A 133 804 187 HOH HOH . E 5 HOH A 134 805 193 HOH HOH . E 5 HOH A 135 806 195 HOH HOH . E 5 HOH A 136 807 197 HOH HOH . E 5 HOH A 137 808 198 HOH HOH . E 5 HOH A 138 809 199 HOH HOH . E 5 HOH A 139 810 200 HOH HOH . E 5 HOH A 140 811 203 HOH HOH . E 5 HOH A 141 812 204 HOH HOH . E 5 HOH A 142 813 206 HOH HOH . E 5 HOH A 143 814 211 HOH HOH . E 5 HOH A 144 815 218 HOH HOH . E 5 HOH A 145 816 221 HOH HOH . E 5 HOH A 146 817 224 HOH HOH . E 5 HOH A 147 818 227 HOH HOH . E 5 HOH A 148 819 230 HOH HOH . E 5 HOH A 149 820 231 HOH HOH . E 5 HOH A 150 821 233 HOH HOH . E 5 HOH A 151 822 235 HOH HOH . E 5 HOH A 152 823 236 HOH HOH . E 5 HOH A 153 824 239 HOH HOH . E 5 HOH A 154 825 241 HOH HOH . E 5 HOH A 155 826 242 HOH HOH . E 5 HOH A 156 827 243 HOH HOH . E 5 HOH A 157 828 244 HOH HOH . E 5 HOH A 158 829 245 HOH HOH . E 5 HOH A 159 830 246 HOH HOH . E 5 HOH A 160 831 247 HOH HOH . E 5 HOH A 161 832 248 HOH HOH . E 5 HOH A 162 833 249 HOH HOH . E 5 HOH A 163 834 250 HOH HOH . E 5 HOH A 164 835 251 HOH HOH . E 5 HOH A 165 836 253 HOH HOH . E 5 HOH A 166 837 255 HOH HOH . E 5 HOH A 167 838 259 HOH HOH . E 5 HOH A 168 839 261 HOH HOH . E 5 HOH A 169 840 263 HOH HOH . E 5 HOH A 170 841 264 HOH HOH . E 5 HOH A 171 842 265 HOH HOH . E 5 HOH A 172 843 270 HOH HOH . E 5 HOH A 173 844 271 HOH HOH . E 5 HOH A 174 845 272 HOH HOH . E 5 HOH A 175 846 273 HOH HOH . E 5 HOH A 176 847 274 HOH HOH . E 5 HOH A 177 848 275 HOH HOH . E 5 HOH A 178 849 276 HOH HOH . E 5 HOH A 179 850 277 HOH HOH . E 5 HOH A 180 851 279 HOH HOH . E 5 HOH A 181 852 280 HOH HOH . E 5 HOH A 182 853 281 HOH HOH . E 5 HOH A 183 854 283 HOH HOH . E 5 HOH A 184 855 284 HOH HOH . E 5 HOH A 185 856 285 HOH HOH . E 5 HOH A 186 857 286 HOH HOH . E 5 HOH A 187 858 287 HOH HOH . E 5 HOH A 188 859 288 HOH HOH . E 5 HOH A 189 860 289 HOH HOH . E 5 HOH A 190 861 290 HOH HOH . E 5 HOH A 191 862 291 HOH HOH . E 5 HOH A 192 863 292 HOH HOH . E 5 HOH A 193 864 293 HOH HOH . E 5 HOH A 194 865 294 HOH HOH . E 5 HOH A 195 866 295 HOH HOH . E 5 HOH A 196 867 296 HOH HOH . E 5 HOH A 197 868 297 HOH HOH . E 5 HOH A 198 869 298 HOH HOH . E 5 HOH A 199 870 300 HOH HOH . E 5 HOH A 200 871 301 HOH HOH . E 5 HOH A 201 872 303 HOH HOH . E 5 HOH A 202 873 304 HOH HOH . E 5 HOH A 203 874 307 HOH HOH . E 5 HOH A 204 875 308 HOH HOH . E 5 HOH A 205 876 309 HOH HOH . E 5 HOH A 206 877 310 HOH HOH . E 5 HOH A 207 878 312 HOH HOH . E 5 HOH A 208 879 313 HOH HOH . E 5 HOH A 209 880 314 HOH HOH . E 5 HOH A 210 881 315 HOH HOH . E 5 HOH A 211 882 316 HOH HOH . E 5 HOH A 212 883 317 HOH HOH . E 5 HOH A 213 884 318 HOH HOH . E 5 HOH A 214 885 322 HOH HOH . E 5 HOH A 215 886 323 HOH HOH . E 5 HOH A 216 887 325 HOH HOH . E 5 HOH A 217 888 326 HOH HOH . E 5 HOH A 218 889 329 HOH HOH . E 5 HOH A 219 890 330 HOH HOH . E 5 HOH A 220 891 331 HOH HOH . E 5 HOH A 221 892 332 HOH HOH . E 5 HOH A 222 893 333 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 3 14.353 51.173 -4.011 1 42.97 ? N SAM 670 A 1 HETATM 2 C CA SAM . . . C 3 15.351 51.126 -2.895 1 43.38 ? CA SAM 670 A 1 HETATM 3 C C SAM . . . C 3 15.404 52.479 -2.201 1 43.55 ? C SAM 670 A 1 HETATM 4 O O SAM . . . C 3 15.605 52.603 -0.999 1 42.25 ? O SAM 670 A 1 HETATM 5 O OXT SAM . . . C 3 15.284 53.49 -2.878 1 45.23 ? OXT SAM 670 A 1 HETATM 6 C CB SAM . . . C 3 16.751 50.731 -3.369 1 43.04 ? CB SAM 670 A 1 HETATM 7 C CG SAM . . . C 3 17.313 49.415 -2.841 1 40.07 ? CG SAM 670 A 1 HETATM 8 S SD SAM . . . C 3 18.641 49.58 -1.632 1 29.58 ? SD SAM 670 A 1 HETATM 9 C CE SAM . . . C 3 19.859 50.554 -2.556 1 41.21 ? CE SAM 670 A 1 HETATM 10 C C5' SAM . . . C 3 19.426 47.974 -1.72 1 30.04 ? C5' SAM 670 A 1 HETATM 11 C C4' SAM . . . C 3 18.494 46.86 -1.281 1 28.74 ? C4' SAM 670 A 1 HETATM 12 O O4' SAM . . . C 3 19.046 45.64 -1.736 1 28.41 ? O4' SAM 670 A 1 HETATM 13 C C3' SAM . . . C 3 18.356 46.756 0.238 1 27.01 ? C3' SAM 670 A 1 HETATM 14 O O3' SAM . . . C 3 16.997 46.811 0.618 1 24.67 ? O3' SAM 670 A 1 HETATM 15 C C2' SAM . . . C 3 18.897 45.391 0.561 1 25.32 ? C2' SAM 670 A 1 HETATM 16 O O2' SAM . . . C 3 18.084 44.801 1.541 1 27.2 ? O2' SAM 670 A 1 HETATM 17 C C1' SAM . . . C 3 18.723 44.694 -0.773 1 25.13 ? C1' SAM 670 A 1 HETATM 18 N N9 SAM . . . C 3 19.549 43.511 -0.949 1 25.22 ? N9 SAM 670 A 1 HETATM 19 C C8 SAM . . . C 3 20.893 43.346 -0.787 1 27.35 ? C8 SAM 670 A 1 HETATM 20 N N7 SAM . . . C 3 21.191 42.05 -1.035 1 25.95 ? N7 SAM 670 A 1 HETATM 21 C C5 SAM . . . C 3 20.052 41.404 -1.365 1 25.51 ? C5 SAM 670 A 1 HETATM 22 C C6 SAM . . . C 3 19.752 40.092 -1.719 1 24.03 ? C6 SAM 670 A 1 HETATM 23 N N6 SAM . . . C 3 20.694 39.158 -1.793 1 21.69 ? N6 SAM 670 A 1 HETATM 24 N N1 SAM . . . C 3 18.437 39.759 -1.988 1 21 ? N1 SAM 670 A 1 HETATM 25 C C2 SAM . . . C 3 17.44 40.693 -1.951 1 19.06 ? C2 SAM 670 A 1 HETATM 26 N N3 SAM . . . C 3 17.73 41.981 -1.587 1 20.65 ? N3 SAM 670 A 1 HETATM 27 C C4 SAM . . . C 3 19.012 42.322 -1.312 1 25.43 ? C4 SAM 670 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #