data_3PSN # _model_server_result.job_id umnOzAt2wy960NyB0NQnPg _model_server_result.datetime_utc '2025-09-04 02:59:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3psn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 3PSN # _exptl.entry_id 3PSN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.44 _cell.angle_gamma 90 _cell.entry_id 3PSN _cell.length_a 42.437 _cell.length_b 69.122 _cell.length_c 69.024 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PSN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 A,B,C,D,E,F,G,H,I,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 18 A ASP 8 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc2 A NE2 HIS 20 A HIS 10 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc3 A OD1 ASN 49 A ASN 39 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc4 A OD1 ASN 49 A ASN 39 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc5 A OD1 ASP 72 A ASP 62 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc6 A NE2 HIS 96 A HIS 86 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc7 A ND1 HIS 125 A HIS 115 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc8 A NE2 HIS 127 A HIS 117 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc9 A OE2 GLU 133 A GLU 123 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc10 A O LYS 190 A LYS 180 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc11 I O HOH . A HOH 183 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc12 I O HOH . A HOH 183 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc13 B OD1 ASP 18 B ASP 8 1_555 F MN MN . B MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc14 B NE2 HIS 20 B HIS 10 1_555 F MN MN . B MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc15 B OD1 ASN 49 B ASN 39 1_555 F MN MN . B MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc16 B OD1 ASN 49 B ASN 39 1_555 G MN MN . B MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc17 B OD1 ASP 72 B ASP 62 1_555 G MN MN . B MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc18 B NE2 HIS 96 B HIS 86 1_555 G MN MN . B MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc19 B ND1 HIS 125 B HIS 115 1_555 G MN MN . B MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc20 B NE2 HIS 127 B HIS 117 1_555 F MN MN . B MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc21 B OE2 GLU 133 B GLU 123 1_555 H MN MN . B MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc22 B O LYS 190 B LYS 180 1_555 H MN MN . B MN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc23 J O HOH . B HOH 183 1_555 F MN MN . B MN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc24 J O HOH . B HOH 183 1_555 G MN MN . B MN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3PSN _atom_sites.fract_transf_matrix[1][1] 0.023564 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006509 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 601 601 MN MN . D 2 MN A 1 602 602 MN MN . E 2 MN A 1 603 603 MN MN . F 2 MN B 1 701 701 MN MN . G 2 MN B 1 702 702 MN MN . H 2 MN B 1 703 703 MN MN . I 3 HOH A 1 183 1 HOH HOH . I 3 HOH A 2 184 4 HOH HOH . I 3 HOH A 3 185 7 HOH HOH . I 3 HOH A 4 186 9 HOH HOH . I 3 HOH A 5 187 12 HOH HOH . I 3 HOH A 6 188 13 HOH HOH . I 3 HOH A 7 189 14 HOH HOH . I 3 HOH A 8 190 15 HOH HOH . I 3 HOH A 9 191 16 HOH HOH . I 3 HOH A 10 192 17 HOH HOH . I 3 HOH A 11 193 18 HOH HOH . I 3 HOH A 12 194 19 HOH HOH . I 3 HOH A 13 195 20 HOH HOH . I 3 HOH A 14 196 21 HOH HOH . I 3 HOH A 15 197 22 HOH HOH . I 3 HOH A 16 198 25 HOH HOH . I 3 HOH A 17 199 26 HOH HOH . I 3 HOH A 18 200 30 HOH HOH . I 3 HOH A 19 201 33 HOH HOH . I 3 HOH A 20 202 35 HOH HOH . I 3 HOH A 21 203 38 HOH HOH . I 3 HOH A 22 204 40 HOH HOH . I 3 HOH A 23 205 41 HOH HOH . I 3 HOH A 24 206 42 HOH HOH . I 3 HOH A 25 207 43 HOH HOH . I 3 HOH A 26 208 46 HOH HOH . I 3 HOH A 27 209 47 HOH HOH . J 3 HOH B 1 183 2 HOH HOH . J 3 HOH B 2 184 3 HOH HOH . J 3 HOH B 3 185 5 HOH HOH . J 3 HOH B 4 186 6 HOH HOH . J 3 HOH B 5 187 8 HOH HOH . J 3 HOH B 6 188 10 HOH HOH . J 3 HOH B 7 189 11 HOH HOH . J 3 HOH B 8 190 23 HOH HOH . J 3 HOH B 9 191 24 HOH HOH . J 3 HOH B 10 192 27 HOH HOH . J 3 HOH B 11 193 28 HOH HOH . J 3 HOH B 12 194 29 HOH HOH . J 3 HOH B 13 195 31 HOH HOH . J 3 HOH B 14 196 32 HOH HOH . J 3 HOH B 15 197 34 HOH HOH . J 3 HOH B 16 198 36 HOH HOH . J 3 HOH B 17 199 37 HOH HOH . J 3 HOH B 18 200 39 HOH HOH . J 3 HOH B 19 201 44 HOH HOH . J 3 HOH B 20 202 45 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -11.503 _atom_site.Cartn_y 5.213 _atom_site.Cartn_z -13.927 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 410 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #