data_3PT7 # _model_server_result.job_id 3dZy4XSweJy0z8CM2iih0A _model_server_result.datetime_utc '2024-11-18 08:33:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pt7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":153}' # _entry.id 3PT7 # _exptl.entry_id 3PT7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PT7 _cell.length_a 74.073 _cell.length_b 74.073 _cell.length_c 152.069 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PT7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N THR 2 A THR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.544 ? metalc ? metalc1 A NE2 HIS 98 A HIS 97 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc2 C FE HEM . A HEM 500 1_555 D O2 OXY . A OXY 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc3 B NE2 HIS 98 B HIS 98 1_555 E FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc4 E FE HEM . B HEM 500 1_555 F O2 OXY . B OXY 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 3PT7 _atom_sites.fract_transf_matrix[1][1] 0.0135 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0135 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006576 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 500 500 HEM HEM . D 4 OXY A 1 501 501 OXY OXY . E 3 HEM B 1 500 500 HEM HEM . F 4 OXY B 1 501 501 OXY OXY . G 5 GOL B 1 153 1 GOL GOL . H 6 HOH A 1 152 152 HOH HOH . H 6 HOH A 2 153 153 HOH HOH . H 6 HOH A 3 154 1 HOH HOH . H 6 HOH A 4 155 155 HOH HOH . H 6 HOH A 5 156 156 HOH HOH . H 6 HOH A 6 157 5 HOH HOH . H 6 HOH A 7 158 6 HOH HOH . H 6 HOH A 8 159 159 HOH HOH . H 6 HOH A 9 160 8 HOH HOH . H 6 HOH A 10 161 161 HOH HOH . H 6 HOH A 11 162 162 HOH HOH . H 6 HOH A 12 163 163 HOH HOH . H 6 HOH A 13 164 10 HOH HOH . H 6 HOH A 14 165 11 HOH HOH . H 6 HOH A 15 166 166 HOH HOH . H 6 HOH A 16 167 12 HOH HOH . H 6 HOH A 17 168 15 HOH HOH . H 6 HOH A 18 169 17 HOH HOH . H 6 HOH A 19 170 18 HOH HOH . H 6 HOH A 20 171 21 HOH HOH . H 6 HOH A 21 172 23 HOH HOH . H 6 HOH A 22 173 27 HOH HOH . H 6 HOH A 23 174 31 HOH HOH . H 6 HOH A 24 175 33 HOH HOH . H 6 HOH A 25 176 34 HOH HOH . H 6 HOH A 26 177 35 HOH HOH . H 6 HOH A 27 178 36 HOH HOH . H 6 HOH A 28 179 37 HOH HOH . H 6 HOH A 29 180 38 HOH HOH . H 6 HOH A 30 181 39 HOH HOH . H 6 HOH A 31 182 40 HOH HOH . H 6 HOH A 32 183 41 HOH HOH . H 6 HOH A 33 184 43 HOH HOH . H 6 HOH A 34 185 44 HOH HOH . H 6 HOH A 35 186 45 HOH HOH . H 6 HOH A 36 187 47 HOH HOH . H 6 HOH A 37 188 48 HOH HOH . H 6 HOH A 38 189 49 HOH HOH . H 6 HOH A 39 190 50 HOH HOH . H 6 HOH A 40 191 51 HOH HOH . H 6 HOH A 41 192 52 HOH HOH . H 6 HOH A 42 193 55 HOH HOH . H 6 HOH A 43 194 56 HOH HOH . H 6 HOH A 44 195 57 HOH HOH . H 6 HOH A 45 196 60 HOH HOH . H 6 HOH A 46 197 65 HOH HOH . H 6 HOH A 47 198 66 HOH HOH . H 6 HOH A 48 199 67 HOH HOH . H 6 HOH A 49 200 70 HOH HOH . H 6 HOH A 50 201 72 HOH HOH . H 6 HOH A 51 202 73 HOH HOH . H 6 HOH A 52 203 74 HOH HOH . H 6 HOH A 53 204 75 HOH HOH . H 6 HOH A 54 205 76 HOH HOH . H 6 HOH A 55 206 77 HOH HOH . H 6 HOH A 56 207 78 HOH HOH . H 6 HOH A 57 208 79 HOH HOH . H 6 HOH A 58 209 81 HOH HOH . H 6 HOH A 59 210 82 HOH HOH . H 6 HOH A 60 211 83 HOH HOH . H 6 HOH A 61 212 84 HOH HOH . H 6 HOH A 62 213 85 HOH HOH . H 6 HOH A 63 214 87 HOH HOH . H 6 HOH A 64 215 88 HOH HOH . H 6 HOH A 65 216 92 HOH HOH . H 6 HOH A 66 217 97 HOH HOH . H 6 HOH A 67 218 98 HOH HOH . H 6 HOH A 68 219 100 HOH HOH . H 6 HOH A 69 220 102 HOH HOH . H 6 HOH A 70 221 106 HOH HOH . H 6 HOH A 71 222 107 HOH HOH . H 6 HOH A 72 223 108 HOH HOH . H 6 HOH A 73 224 112 HOH HOH . H 6 HOH A 74 225 113 HOH HOH . H 6 HOH A 75 226 114 HOH HOH . H 6 HOH A 76 227 115 HOH HOH . H 6 HOH A 77 228 116 HOH HOH . H 6 HOH A 78 229 118 HOH HOH . H 6 HOH A 79 230 123 HOH HOH . H 6 HOH A 80 231 125 HOH HOH . H 6 HOH A 81 232 126 HOH HOH . H 6 HOH A 82 233 127 HOH HOH . H 6 HOH A 83 234 128 HOH HOH . H 6 HOH A 84 235 129 HOH HOH . H 6 HOH A 85 236 130 HOH HOH . H 6 HOH A 86 237 138 HOH HOH . H 6 HOH A 87 238 140 HOH HOH . H 6 HOH A 88 239 143 HOH HOH . H 6 HOH A 89 240 145 HOH HOH . H 6 HOH A 90 241 146 HOH HOH . H 6 HOH A 91 242 147 HOH HOH . H 6 HOH A 92 243 149 HOH HOH . H 6 HOH A 93 244 150 HOH HOH . I 6 HOH B 1 154 154 HOH HOH . I 6 HOH B 2 155 2 HOH HOH . I 6 HOH B 3 156 3 HOH HOH . I 6 HOH B 4 157 157 HOH HOH . I 6 HOH B 5 158 158 HOH HOH . I 6 HOH B 6 159 4 HOH HOH . I 6 HOH B 7 160 160 HOH HOH . I 6 HOH B 8 161 7 HOH HOH . I 6 HOH B 9 162 9 HOH HOH . I 6 HOH B 10 163 13 HOH HOH . I 6 HOH B 11 164 14 HOH HOH . I 6 HOH B 12 165 165 HOH HOH . I 6 HOH B 13 166 16 HOH HOH . I 6 HOH B 14 167 167 HOH HOH . I 6 HOH B 15 168 19 HOH HOH . I 6 HOH B 16 169 20 HOH HOH . I 6 HOH B 17 170 22 HOH HOH . I 6 HOH B 18 171 24 HOH HOH . I 6 HOH B 19 172 25 HOH HOH . I 6 HOH B 20 173 26 HOH HOH . I 6 HOH B 21 174 28 HOH HOH . I 6 HOH B 22 175 29 HOH HOH . I 6 HOH B 23 176 30 HOH HOH . I 6 HOH B 24 177 32 HOH HOH . I 6 HOH B 25 178 42 HOH HOH . I 6 HOH B 26 179 46 HOH HOH . I 6 HOH B 27 180 53 HOH HOH . I 6 HOH B 28 181 54 HOH HOH . I 6 HOH B 29 182 58 HOH HOH . I 6 HOH B 30 183 59 HOH HOH . I 6 HOH B 31 184 61 HOH HOH . I 6 HOH B 32 185 62 HOH HOH . I 6 HOH B 33 186 63 HOH HOH . I 6 HOH B 34 187 64 HOH HOH . I 6 HOH B 35 188 68 HOH HOH . I 6 HOH B 36 189 69 HOH HOH . I 6 HOH B 37 190 71 HOH HOH . I 6 HOH B 38 191 80 HOH HOH . I 6 HOH B 39 192 86 HOH HOH . I 6 HOH B 40 193 89 HOH HOH . I 6 HOH B 41 194 90 HOH HOH . I 6 HOH B 42 195 91 HOH HOH . I 6 HOH B 43 196 94 HOH HOH . I 6 HOH B 44 197 95 HOH HOH . I 6 HOH B 45 198 96 HOH HOH . I 6 HOH B 46 199 99 HOH HOH . I 6 HOH B 47 200 101 HOH HOH . I 6 HOH B 48 201 104 HOH HOH . I 6 HOH B 49 202 105 HOH HOH . I 6 HOH B 50 203 110 HOH HOH . I 6 HOH B 51 204 111 HOH HOH . I 6 HOH B 52 205 117 HOH HOH . I 6 HOH B 53 206 119 HOH HOH . I 6 HOH B 54 207 120 HOH HOH . I 6 HOH B 55 208 121 HOH HOH . I 6 HOH B 56 209 122 HOH HOH . I 6 HOH B 57 210 132 HOH HOH . I 6 HOH B 58 211 133 HOH HOH . I 6 HOH B 59 212 134 HOH HOH . I 6 HOH B 60 213 135 HOH HOH . I 6 HOH B 61 214 136 HOH HOH . I 6 HOH B 62 215 137 HOH HOH . I 6 HOH B 63 216 139 HOH HOH . I 6 HOH B 64 217 141 HOH HOH . I 6 HOH B 65 218 142 HOH HOH . I 6 HOH B 66 219 144 HOH HOH . I 6 HOH B 67 220 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 -24.847 19.315 47.141 1 61.76 ? C1 GOL 153 B 1 HETATM 2 O O1 GOL . . . G 5 -25.11 20.014 45.942 1 83.99 ? O1 GOL 153 B 1 HETATM 3 C C2 GOL . . . G 5 -23.449 19.698 47.613 1 69.08 ? C2 GOL 153 B 1 HETATM 4 O O2 GOL . . . G 5 -22.717 20.215 46.518 1 65.53 ? O2 GOL 153 B 1 HETATM 5 C C3 GOL . . . G 5 -22.755 18.464 48.179 1 43.25 ? C3 GOL 153 B 1 HETATM 6 O O3 GOL . . . G 5 -23.606 17.883 49.143 1 53.31 ? O3 GOL 153 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 404 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #