data_3PTK # _model_server_result.job_id a5ElQNxJ9KEHwmcvImNz0w _model_server_result.datetime_utc '2024-11-15 03:47:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ptk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":487}' # _entry.id 3PTK # _exptl.entry_id 3PTK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PTK _cell.length_a 112.656 _cell.length_b 112.656 _cell.length_c 182.773 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PTK _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 203 A CYS 184 1_555 A SG CYS 238 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 217 A CYS 198 1_555 A SG CYS 225 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf3 B SG CYS 203 B CYS 184 1_555 B SG CYS 238 B CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 217 B CYS 198 1_555 B SG CYS 225 B CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc1 A OD2 ASP 85 A ASP 66 1_555 D ZN ZN . A ZN 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc2 A ND1 HIS 88 A HIS 69 1_555 D ZN ZN . A ZN 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc3 D ZN ZN . A ZN 487 1_555 B OE2 GLU 55 B GLU 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc4 D ZN ZN . A ZN 487 1_555 B NE2 HIS 88 B HIS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3PTK _atom_sites.fract_transf_matrix[1][1] 0.008877 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008877 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005471 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TRS A 1 1164 1164 TRS TRS . D 3 ZN A 1 487 1164 ZN ZN . E 2 TRS B 1 1165 1165 TRS TRS . F 4 HOH A 1 488 2 HOH HOH . F 4 HOH A 2 489 3 HOH HOH . F 4 HOH A 3 490 4 HOH HOH . F 4 HOH A 4 491 5 HOH HOH . F 4 HOH A 5 492 6 HOH HOH . F 4 HOH A 6 493 7 HOH HOH . F 4 HOH A 7 494 10 HOH HOH . F 4 HOH A 8 495 11 HOH HOH . F 4 HOH A 9 496 13 HOH HOH . F 4 HOH A 10 497 14 HOH HOH . F 4 HOH A 11 498 16 HOH HOH . F 4 HOH A 12 499 17 HOH HOH . F 4 HOH A 13 500 18 HOH HOH . F 4 HOH A 14 501 19 HOH HOH . F 4 HOH A 15 502 21 HOH HOH . F 4 HOH A 16 503 24 HOH HOH . F 4 HOH A 17 504 25 HOH HOH . F 4 HOH A 18 505 26 HOH HOH . F 4 HOH A 19 506 27 HOH HOH . F 4 HOH A 20 507 33 HOH HOH . F 4 HOH A 21 508 34 HOH HOH . F 4 HOH A 22 509 38 HOH HOH . F 4 HOH A 23 510 39 HOH HOH . F 4 HOH A 24 511 40 HOH HOH . F 4 HOH A 25 512 41 HOH HOH . F 4 HOH A 26 513 42 HOH HOH . F 4 HOH A 27 514 43 HOH HOH . F 4 HOH A 28 515 44 HOH HOH . F 4 HOH A 29 516 46 HOH HOH . F 4 HOH A 30 517 47 HOH HOH . F 4 HOH A 31 518 48 HOH HOH . F 4 HOH A 32 519 49 HOH HOH . F 4 HOH A 33 520 50 HOH HOH . F 4 HOH A 34 521 51 HOH HOH . F 4 HOH A 35 522 52 HOH HOH . F 4 HOH A 36 523 56 HOH HOH . F 4 HOH A 37 524 59 HOH HOH . F 4 HOH A 38 525 60 HOH HOH . F 4 HOH A 39 526 62 HOH HOH . F 4 HOH A 40 527 65 HOH HOH . F 4 HOH A 41 528 67 HOH HOH . F 4 HOH A 42 529 70 HOH HOH . F 4 HOH A 43 530 71 HOH HOH . F 4 HOH A 44 531 72 HOH HOH . F 4 HOH A 45 532 77 HOH HOH . F 4 HOH A 46 533 82 HOH HOH . F 4 HOH A 47 534 83 HOH HOH . F 4 HOH A 48 535 84 HOH HOH . F 4 HOH A 49 536 87 HOH HOH . F 4 HOH A 50 537 90 HOH HOH . F 4 HOH A 51 538 91 HOH HOH . F 4 HOH A 52 539 94 HOH HOH . F 4 HOH A 53 540 95 HOH HOH . F 4 HOH A 54 541 96 HOH HOH . F 4 HOH A 55 542 102 HOH HOH . F 4 HOH A 56 543 104 HOH HOH . F 4 HOH A 57 544 107 HOH HOH . F 4 HOH A 58 545 108 HOH HOH . F 4 HOH A 59 546 110 HOH HOH . F 4 HOH A 60 547 111 HOH HOH . F 4 HOH A 61 548 112 HOH HOH . F 4 HOH A 62 549 113 HOH HOH . F 4 HOH A 63 550 114 HOH HOH . F 4 HOH A 64 551 117 HOH HOH . F 4 HOH A 65 552 119 HOH HOH . F 4 HOH A 66 553 120 HOH HOH . F 4 HOH A 67 554 121 HOH HOH . F 4 HOH A 68 555 123 HOH HOH . F 4 HOH A 69 556 125 HOH HOH . F 4 HOH A 70 557 126 HOH HOH . F 4 HOH A 71 558 127 HOH HOH . F 4 HOH A 72 559 128 HOH HOH . F 4 HOH A 73 560 129 HOH HOH . F 4 HOH A 74 561 131 HOH HOH . F 4 HOH A 75 562 132 HOH HOH . F 4 HOH A 76 563 133 HOH HOH . F 4 HOH A 77 564 135 HOH HOH . F 4 HOH A 78 565 137 HOH HOH . F 4 HOH A 79 566 138 HOH HOH . F 4 HOH A 80 567 139 HOH HOH . F 4 HOH A 81 568 140 HOH HOH . F 4 HOH A 82 569 141 HOH HOH . F 4 HOH A 83 570 142 HOH HOH . F 4 HOH A 84 571 143 HOH HOH . F 4 HOH A 85 572 144 HOH HOH . F 4 HOH A 86 573 145 HOH HOH . F 4 HOH A 87 574 147 HOH HOH . F 4 HOH A 88 575 148 HOH HOH . F 4 HOH A 89 576 149 HOH HOH . F 4 HOH A 90 577 150 HOH HOH . F 4 HOH A 91 578 151 HOH HOH . F 4 HOH A 92 579 153 HOH HOH . F 4 HOH A 93 580 154 HOH HOH . F 4 HOH A 94 581 155 HOH HOH . F 4 HOH A 95 582 157 HOH HOH . F 4 HOH A 96 583 158 HOH HOH . F 4 HOH A 97 584 159 HOH HOH . F 4 HOH A 98 585 162 HOH HOH . F 4 HOH A 99 586 163 HOH HOH . F 4 HOH A 100 587 165 HOH HOH . F 4 HOH A 101 588 166 HOH HOH . F 4 HOH A 102 589 168 HOH HOH . F 4 HOH A 103 590 170 HOH HOH . F 4 HOH A 104 591 172 HOH HOH . F 4 HOH A 105 592 173 HOH HOH . F 4 HOH A 106 593 174 HOH HOH . F 4 HOH A 107 594 175 HOH HOH . F 4 HOH A 108 595 176 HOH HOH . F 4 HOH A 109 596 177 HOH HOH . F 4 HOH A 110 597 178 HOH HOH . F 4 HOH A 111 598 179 HOH HOH . F 4 HOH A 112 599 180 HOH HOH . F 4 HOH A 113 600 185 HOH HOH . F 4 HOH A 114 601 186 HOH HOH . F 4 HOH A 115 602 187 HOH HOH . F 4 HOH A 116 603 188 HOH HOH . F 4 HOH A 117 604 192 HOH HOH . F 4 HOH A 118 605 193 HOH HOH . F 4 HOH A 119 606 194 HOH HOH . F 4 HOH A 120 607 200 HOH HOH . F 4 HOH A 121 608 201 HOH HOH . F 4 HOH A 122 609 202 HOH HOH . F 4 HOH A 123 610 203 HOH HOH . F 4 HOH A 124 611 204 HOH HOH . F 4 HOH A 125 612 206 HOH HOH . F 4 HOH A 126 613 209 HOH HOH . F 4 HOH A 127 614 210 HOH HOH . F 4 HOH A 128 615 214 HOH HOH . F 4 HOH A 129 616 215 HOH HOH . F 4 HOH A 130 617 216 HOH HOH . F 4 HOH A 131 618 217 HOH HOH . F 4 HOH A 132 619 218 HOH HOH . F 4 HOH A 133 620 228 HOH HOH . F 4 HOH A 134 621 229 HOH HOH . F 4 HOH A 135 622 230 HOH HOH . F 4 HOH A 136 623 231 HOH HOH . G 4 HOH B 1 487 1 HOH HOH . G 4 HOH B 2 488 8 HOH HOH . G 4 HOH B 3 489 9 HOH HOH . G 4 HOH B 4 490 12 HOH HOH . G 4 HOH B 5 491 15 HOH HOH . G 4 HOH B 6 492 20 HOH HOH . G 4 HOH B 7 493 22 HOH HOH . G 4 HOH B 8 494 23 HOH HOH . G 4 HOH B 9 495 28 HOH HOH . G 4 HOH B 10 496 29 HOH HOH . G 4 HOH B 11 497 30 HOH HOH . G 4 HOH B 12 498 31 HOH HOH . G 4 HOH B 13 499 32 HOH HOH . G 4 HOH B 14 500 35 HOH HOH . G 4 HOH B 15 501 36 HOH HOH . G 4 HOH B 16 502 37 HOH HOH . G 4 HOH B 17 503 45 HOH HOH . G 4 HOH B 18 504 53 HOH HOH . G 4 HOH B 19 505 54 HOH HOH . G 4 HOH B 20 506 55 HOH HOH . G 4 HOH B 21 507 57 HOH HOH . G 4 HOH B 22 508 58 HOH HOH . G 4 HOH B 23 509 61 HOH HOH . G 4 HOH B 24 510 63 HOH HOH . G 4 HOH B 25 511 64 HOH HOH . G 4 HOH B 26 512 66 HOH HOH . G 4 HOH B 27 513 68 HOH HOH . G 4 HOH B 28 514 69 HOH HOH . G 4 HOH B 29 515 73 HOH HOH . G 4 HOH B 30 516 74 HOH HOH . G 4 HOH B 31 517 75 HOH HOH . G 4 HOH B 32 518 76 HOH HOH . G 4 HOH B 33 519 78 HOH HOH . G 4 HOH B 34 520 79 HOH HOH . G 4 HOH B 35 521 80 HOH HOH . G 4 HOH B 36 522 81 HOH HOH . G 4 HOH B 37 523 85 HOH HOH . G 4 HOH B 38 524 86 HOH HOH . G 4 HOH B 39 525 88 HOH HOH . G 4 HOH B 40 526 89 HOH HOH . G 4 HOH B 41 527 92 HOH HOH . G 4 HOH B 42 528 93 HOH HOH . G 4 HOH B 43 529 97 HOH HOH . G 4 HOH B 44 530 98 HOH HOH . G 4 HOH B 45 531 99 HOH HOH . G 4 HOH B 46 532 100 HOH HOH . G 4 HOH B 47 533 101 HOH HOH . G 4 HOH B 48 534 103 HOH HOH . G 4 HOH B 49 535 105 HOH HOH . G 4 HOH B 50 536 106 HOH HOH . G 4 HOH B 51 537 109 HOH HOH . G 4 HOH B 52 538 115 HOH HOH . G 4 HOH B 53 539 116 HOH HOH . G 4 HOH B 54 540 118 HOH HOH . G 4 HOH B 55 541 122 HOH HOH . G 4 HOH B 56 542 124 HOH HOH . G 4 HOH B 57 543 130 HOH HOH . G 4 HOH B 58 544 134 HOH HOH . G 4 HOH B 59 545 136 HOH HOH . G 4 HOH B 60 546 146 HOH HOH . G 4 HOH B 61 547 152 HOH HOH . G 4 HOH B 62 548 156 HOH HOH . G 4 HOH B 63 549 160 HOH HOH . G 4 HOH B 64 550 161 HOH HOH . G 4 HOH B 65 551 164 HOH HOH . G 4 HOH B 66 552 167 HOH HOH . G 4 HOH B 67 553 169 HOH HOH . G 4 HOH B 68 554 171 HOH HOH . G 4 HOH B 69 555 181 HOH HOH . G 4 HOH B 70 556 182 HOH HOH . G 4 HOH B 71 557 183 HOH HOH . G 4 HOH B 72 558 184 HOH HOH . G 4 HOH B 73 559 189 HOH HOH . G 4 HOH B 74 560 190 HOH HOH . G 4 HOH B 75 561 191 HOH HOH . G 4 HOH B 76 562 195 HOH HOH . G 4 HOH B 77 563 196 HOH HOH . G 4 HOH B 78 564 197 HOH HOH . G 4 HOH B 79 565 198 HOH HOH . G 4 HOH B 80 566 199 HOH HOH . G 4 HOH B 81 567 205 HOH HOH . G 4 HOH B 82 568 207 HOH HOH . G 4 HOH B 83 569 208 HOH HOH . G 4 HOH B 84 570 211 HOH HOH . G 4 HOH B 85 571 212 HOH HOH . G 4 HOH B 86 572 213 HOH HOH . G 4 HOH B 87 573 219 HOH HOH . G 4 HOH B 88 574 220 HOH HOH . G 4 HOH B 89 575 221 HOH HOH . G 4 HOH B 90 576 222 HOH HOH . G 4 HOH B 91 577 223 HOH HOH . G 4 HOH B 92 578 224 HOH HOH . G 4 HOH B 93 579 225 HOH HOH . G 4 HOH B 94 580 226 HOH HOH . G 4 HOH B 95 581 227 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -35.438 _atom_site.Cartn_y 5.938 _atom_site.Cartn_z -2.378 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 487 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #