data_3PTR # _model_server_result.job_id zqvhxEpkzATfOKHWXBITPQ _model_server_result.datetime_utc '2024-11-26 15:34:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ptr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":4}' # _entry.id 3PTR # _exptl.entry_id 3PTR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 19 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PTR _cell.length_a 65.737 _cell.length_b 66.512 _cell.length_c 104.567 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PTR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3PTR _atom_sites.fract_transf_matrix[1][1] 0.015212 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO B 1 1 1 EDO EDO . C 2 EDO B 1 2 2 EDO EDO . D 2 EDO B 1 3 3 EDO EDO . E 2 EDO B 1 4 4 EDO EDO . F 2 EDO B 1 5 5 EDO EDO . G 2 EDO B 1 6 6 EDO EDO . H 2 EDO B 1 7 7 EDO EDO . I 2 EDO B 1 8 8 EDO EDO . J 2 EDO B 1 9 9 EDO EDO . K 2 EDO B 1 10 10 EDO EDO . L 2 EDO B 1 11 11 EDO EDO . M 2 EDO B 1 13 13 EDO EDO . N 2 EDO B 1 14 14 EDO EDO . O 2 EDO B 1 15 15 EDO EDO . P 2 EDO B 1 16 16 EDO EDO . Q 2 EDO B 1 17 17 EDO EDO . R 2 EDO B 1 18 18 EDO EDO . S 2 EDO B 1 19 19 EDO EDO . T 2 EDO B 1 20 20 EDO EDO . U 3 HOH B 1 12 12 HOH HOH . U 3 HOH B 2 21 21 HOH HOH . U 3 HOH B 3 22 22 HOH HOH . U 3 HOH B 4 23 23 HOH HOH . U 3 HOH B 5 24 24 HOH HOH . U 3 HOH B 6 25 25 HOH HOH . U 3 HOH B 7 26 26 HOH HOH . U 3 HOH B 8 27 27 HOH HOH . U 3 HOH B 9 28 28 HOH HOH . U 3 HOH B 10 29 29 HOH HOH . U 3 HOH B 11 30 30 HOH HOH . U 3 HOH B 12 31 31 HOH HOH . U 3 HOH B 13 32 32 HOH HOH . U 3 HOH B 14 33 33 HOH HOH . U 3 HOH B 15 34 34 HOH HOH . U 3 HOH B 16 35 35 HOH HOH . U 3 HOH B 17 36 36 HOH HOH . U 3 HOH B 18 37 37 HOH HOH . U 3 HOH B 19 38 38 HOH HOH . U 3 HOH B 20 39 39 HOH HOH . U 3 HOH B 21 40 40 HOH HOH . U 3 HOH B 22 41 41 HOH HOH . U 3 HOH B 23 42 42 HOH HOH . U 3 HOH B 24 43 43 HOH HOH . U 3 HOH B 25 44 44 HOH HOH . U 3 HOH B 26 45 45 HOH HOH . U 3 HOH B 27 47 47 HOH HOH . U 3 HOH B 28 48 48 HOH HOH . U 3 HOH B 29 49 49 HOH HOH . U 3 HOH B 30 50 50 HOH HOH . U 3 HOH B 31 51 51 HOH HOH . U 3 HOH B 32 52 52 HOH HOH . U 3 HOH B 33 53 53 HOH HOH . U 3 HOH B 34 54 54 HOH HOH . U 3 HOH B 35 55 55 HOH HOH . U 3 HOH B 36 56 56 HOH HOH . U 3 HOH B 37 57 57 HOH HOH . U 3 HOH B 38 58 58 HOH HOH . U 3 HOH B 39 452 1 HOH HOH . U 3 HOH B 40 453 2 HOH HOH . U 3 HOH B 41 454 3 HOH HOH . U 3 HOH B 42 455 4 HOH HOH . U 3 HOH B 43 456 5 HOH HOH . U 3 HOH B 44 457 6 HOH HOH . U 3 HOH B 45 458 7 HOH HOH . U 3 HOH B 46 459 8 HOH HOH . U 3 HOH B 47 460 9 HOH HOH . U 3 HOH B 48 461 10 HOH HOH . U 3 HOH B 49 462 11 HOH HOH . U 3 HOH B 50 463 13 HOH HOH . U 3 HOH B 51 464 14 HOH HOH . U 3 HOH B 52 465 15 HOH HOH . U 3 HOH B 53 466 16 HOH HOH . U 3 HOH B 54 467 17 HOH HOH . U 3 HOH B 55 468 18 HOH HOH . U 3 HOH B 56 469 19 HOH HOH . U 3 HOH B 57 470 20 HOH HOH . U 3 HOH B 58 471 60 HOH HOH . U 3 HOH B 59 472 61 HOH HOH . U 3 HOH B 60 473 62 HOH HOH . U 3 HOH B 61 474 63 HOH HOH . U 3 HOH B 62 475 64 HOH HOH . U 3 HOH B 63 476 65 HOH HOH . U 3 HOH B 64 477 66 HOH HOH . U 3 HOH B 65 478 67 HOH HOH . U 3 HOH B 66 479 68 HOH HOH . U 3 HOH B 67 480 70 HOH HOH . U 3 HOH B 68 481 71 HOH HOH . U 3 HOH B 69 482 72 HOH HOH . U 3 HOH B 70 483 73 HOH HOH . U 3 HOH B 71 484 74 HOH HOH . U 3 HOH B 72 485 75 HOH HOH . U 3 HOH B 73 486 76 HOH HOH . U 3 HOH B 74 487 77 HOH HOH . U 3 HOH B 75 488 78 HOH HOH . U 3 HOH B 76 489 79 HOH HOH . U 3 HOH B 77 490 80 HOH HOH . U 3 HOH B 78 491 81 HOH HOH . U 3 HOH B 79 492 82 HOH HOH . U 3 HOH B 80 493 83 HOH HOH . U 3 HOH B 81 494 84 HOH HOH . U 3 HOH B 82 495 85 HOH HOH . U 3 HOH B 83 496 87 HOH HOH . U 3 HOH B 84 497 89 HOH HOH . U 3 HOH B 85 498 90 HOH HOH . U 3 HOH B 86 499 91 HOH HOH . U 3 HOH B 87 500 92 HOH HOH . U 3 HOH B 88 501 93 HOH HOH . U 3 HOH B 89 502 94 HOH HOH . U 3 HOH B 90 503 96 HOH HOH . U 3 HOH B 91 504 97 HOH HOH . U 3 HOH B 92 505 98 HOH HOH . U 3 HOH B 93 506 99 HOH HOH . U 3 HOH B 94 507 100 HOH HOH . U 3 HOH B 95 508 101 HOH HOH . U 3 HOH B 96 509 102 HOH HOH . U 3 HOH B 97 510 103 HOH HOH . U 3 HOH B 98 511 104 HOH HOH . U 3 HOH B 99 512 105 HOH HOH . U 3 HOH B 100 513 106 HOH HOH . U 3 HOH B 101 514 107 HOH HOH . U 3 HOH B 102 515 108 HOH HOH . U 3 HOH B 103 516 109 HOH HOH . U 3 HOH B 104 517 110 HOH HOH . U 3 HOH B 105 518 112 HOH HOH . U 3 HOH B 106 519 114 HOH HOH . U 3 HOH B 107 520 115 HOH HOH . U 3 HOH B 108 521 117 HOH HOH . U 3 HOH B 109 522 118 HOH HOH . U 3 HOH B 110 523 119 HOH HOH . U 3 HOH B 111 524 120 HOH HOH . U 3 HOH B 112 525 121 HOH HOH . U 3 HOH B 113 526 122 HOH HOH . U 3 HOH B 114 527 123 HOH HOH . U 3 HOH B 115 528 124 HOH HOH . U 3 HOH B 116 529 126 HOH HOH . U 3 HOH B 117 530 127 HOH HOH . U 3 HOH B 118 531 128 HOH HOH . U 3 HOH B 119 532 129 HOH HOH . U 3 HOH B 120 533 130 HOH HOH . U 3 HOH B 121 534 131 HOH HOH . U 3 HOH B 122 535 132 HOH HOH . U 3 HOH B 123 536 133 HOH HOH . U 3 HOH B 124 537 135 HOH HOH . U 3 HOH B 125 538 137 HOH HOH . U 3 HOH B 126 539 138 HOH HOH . U 3 HOH B 127 540 139 HOH HOH . U 3 HOH B 128 541 140 HOH HOH . U 3 HOH B 129 542 142 HOH HOH . U 3 HOH B 130 543 143 HOH HOH . U 3 HOH B 131 544 146 HOH HOH . U 3 HOH B 132 545 147 HOH HOH . U 3 HOH B 133 546 148 HOH HOH . U 3 HOH B 134 547 149 HOH HOH . U 3 HOH B 135 548 150 HOH HOH . U 3 HOH B 136 549 151 HOH HOH . U 3 HOH B 137 550 152 HOH HOH . U 3 HOH B 138 551 153 HOH HOH . U 3 HOH B 139 552 155 HOH HOH . U 3 HOH B 140 553 156 HOH HOH . U 3 HOH B 141 554 158 HOH HOH . U 3 HOH B 142 555 159 HOH HOH . U 3 HOH B 143 556 160 HOH HOH . U 3 HOH B 144 557 161 HOH HOH . U 3 HOH B 145 558 164 HOH HOH . U 3 HOH B 146 559 165 HOH HOH . U 3 HOH B 147 560 167 HOH HOH . U 3 HOH B 148 561 171 HOH HOH . U 3 HOH B 149 562 172 HOH HOH . U 3 HOH B 150 563 173 HOH HOH . U 3 HOH B 151 564 175 HOH HOH . U 3 HOH B 152 565 176 HOH HOH . U 3 HOH B 153 566 177 HOH HOH . U 3 HOH B 154 567 178 HOH HOH . U 3 HOH B 155 568 179 HOH HOH . U 3 HOH B 156 569 181 HOH HOH . U 3 HOH B 157 570 182 HOH HOH . U 3 HOH B 158 571 184 HOH HOH . U 3 HOH B 159 572 187 HOH HOH . U 3 HOH B 160 573 188 HOH HOH . U 3 HOH B 161 574 190 HOH HOH . U 3 HOH B 162 575 192 HOH HOH . U 3 HOH B 163 576 193 HOH HOH . U 3 HOH B 164 577 194 HOH HOH . U 3 HOH B 165 578 195 HOH HOH . U 3 HOH B 166 579 196 HOH HOH . U 3 HOH B 167 580 197 HOH HOH . U 3 HOH B 168 581 198 HOH HOH . U 3 HOH B 169 582 199 HOH HOH . U 3 HOH B 170 583 200 HOH HOH . U 3 HOH B 171 584 201 HOH HOH . U 3 HOH B 172 585 202 HOH HOH . U 3 HOH B 173 586 203 HOH HOH . U 3 HOH B 174 587 204 HOH HOH . U 3 HOH B 175 588 205 HOH HOH . U 3 HOH B 176 589 206 HOH HOH . U 3 HOH B 177 590 207 HOH HOH . U 3 HOH B 178 591 208 HOH HOH . U 3 HOH B 179 592 209 HOH HOH . U 3 HOH B 180 593 210 HOH HOH . U 3 HOH B 181 594 211 HOH HOH . U 3 HOH B 182 595 212 HOH HOH . U 3 HOH B 183 596 213 HOH HOH . U 3 HOH B 184 597 214 HOH HOH . U 3 HOH B 185 598 215 HOH HOH . U 3 HOH B 186 599 216 HOH HOH . U 3 HOH B 187 600 218 HOH HOH . U 3 HOH B 188 601 220 HOH HOH . U 3 HOH B 189 602 221 HOH HOH . U 3 HOH B 190 603 223 HOH HOH . U 3 HOH B 191 604 226 HOH HOH . U 3 HOH B 192 605 227 HOH HOH . U 3 HOH B 193 606 228 HOH HOH . U 3 HOH B 194 607 229 HOH HOH . U 3 HOH B 195 608 230 HOH HOH . U 3 HOH B 196 609 231 HOH HOH . U 3 HOH B 197 610 232 HOH HOH . U 3 HOH B 198 611 234 HOH HOH . U 3 HOH B 199 612 235 HOH HOH . U 3 HOH B 200 613 236 HOH HOH . U 3 HOH B 201 614 238 HOH HOH . U 3 HOH B 202 615 239 HOH HOH . U 3 HOH B 203 616 240 HOH HOH . U 3 HOH B 204 617 243 HOH HOH . U 3 HOH B 205 618 244 HOH HOH . U 3 HOH B 206 619 245 HOH HOH . U 3 HOH B 207 620 246 HOH HOH . U 3 HOH B 208 621 247 HOH HOH . U 3 HOH B 209 622 248 HOH HOH . U 3 HOH B 210 623 249 HOH HOH . U 3 HOH B 211 624 250 HOH HOH . U 3 HOH B 212 625 251 HOH HOH . U 3 HOH B 213 626 252 HOH HOH . U 3 HOH B 214 627 253 HOH HOH . U 3 HOH B 215 628 254 HOH HOH . U 3 HOH B 216 629 255 HOH HOH . U 3 HOH B 217 630 256 HOH HOH . U 3 HOH B 218 631 257 HOH HOH . U 3 HOH B 219 632 258 HOH HOH . U 3 HOH B 220 633 259 HOH HOH . U 3 HOH B 221 634 260 HOH HOH . U 3 HOH B 222 635 261 HOH HOH . U 3 HOH B 223 636 262 HOH HOH . U 3 HOH B 224 637 263 HOH HOH . U 3 HOH B 225 638 264 HOH HOH . U 3 HOH B 226 639 265 HOH HOH . U 3 HOH B 227 640 266 HOH HOH . U 3 HOH B 228 641 267 HOH HOH . U 3 HOH B 229 642 268 HOH HOH . U 3 HOH B 230 643 269 HOH HOH . U 3 HOH B 231 644 270 HOH HOH . U 3 HOH B 232 645 271 HOH HOH . U 3 HOH B 233 646 272 HOH HOH . U 3 HOH B 234 647 273 HOH HOH . U 3 HOH B 235 648 274 HOH HOH . U 3 HOH B 236 649 275 HOH HOH . U 3 HOH B 237 650 276 HOH HOH . U 3 HOH B 238 651 278 HOH HOH . U 3 HOH B 239 652 279 HOH HOH . U 3 HOH B 240 653 280 HOH HOH . U 3 HOH B 241 654 282 HOH HOH . U 3 HOH B 242 655 283 HOH HOH . U 3 HOH B 243 656 284 HOH HOH . U 3 HOH B 244 657 285 HOH HOH . U 3 HOH B 245 658 286 HOH HOH . U 3 HOH B 246 659 287 HOH HOH . U 3 HOH B 247 660 288 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 2 30.084 -8.996 -15.706 1 47.61 ? C1 EDO 4 B 1 HETATM 2 O O1 EDO . . . E 2 30.567 -7.664 -15.915 1 58.87 ? O1 EDO 4 B 1 HETATM 3 C C2 EDO . . . E 2 30.798 -9.942 -16.664 1 49.74 ? C2 EDO 4 B 1 HETATM 4 O O2 EDO . . . E 2 30.237 -11.254 -16.552 1 46.27 ? O2 EDO 4 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #