data_3PUO # _model_server_result.job_id piX1NaOTM_Qb4Gukk5Od4w _model_server_result.datetime_utc '2025-01-02 19:57:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3puo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":294}' # _entry.id 3PUO # _exptl.entry_id 3PUO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PUO _cell.length_a 81.34 _cell.length_b 81.84 _cell.length_c 81.78 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PUO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3PUO _atom_sites.fract_transf_matrix[1][1] 0.012294 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012228 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LYS A 1 293 1 LYS LYS . D 3 GOL A 1 294 1 GOL GOL . E 2 LYS A 1 295 1 LYS LYS . F 2 LYS B 1 293 1 LYS LYS . G 4 HOH A 1 296 2 HOH HOH . G 4 HOH A 2 297 297 HOH HOH . G 4 HOH A 3 298 298 HOH HOH . G 4 HOH A 4 299 299 HOH HOH . G 4 HOH A 5 300 5 HOH HOH . G 4 HOH A 6 301 6 HOH HOH . G 4 HOH A 7 302 7 HOH HOH . G 4 HOH A 8 303 8 HOH HOH . G 4 HOH A 9 304 9 HOH HOH . G 4 HOH A 10 305 11 HOH HOH . G 4 HOH A 11 306 18 HOH HOH . G 4 HOH A 12 307 21 HOH HOH . G 4 HOH A 13 308 308 HOH HOH . G 4 HOH A 14 309 309 HOH HOH . G 4 HOH A 15 310 310 HOH HOH . G 4 HOH A 16 311 311 HOH HOH . G 4 HOH A 17 312 312 HOH HOH . G 4 HOH A 18 313 24 HOH HOH . G 4 HOH A 19 314 28 HOH HOH . G 4 HOH A 20 315 30 HOH HOH . G 4 HOH A 21 316 42 HOH HOH . G 4 HOH A 22 317 44 HOH HOH . G 4 HOH A 23 318 47 HOH HOH . G 4 HOH A 24 319 48 HOH HOH . G 4 HOH A 25 320 320 HOH HOH . G 4 HOH A 26 321 321 HOH HOH . G 4 HOH A 27 322 322 HOH HOH . G 4 HOH A 28 323 53 HOH HOH . G 4 HOH A 29 324 324 HOH HOH . G 4 HOH A 30 325 54 HOH HOH . G 4 HOH A 31 326 326 HOH HOH . G 4 HOH A 32 327 55 HOH HOH . G 4 HOH A 33 328 328 HOH HOH . G 4 HOH A 34 329 57 HOH HOH . G 4 HOH A 35 330 58 HOH HOH . G 4 HOH A 36 331 59 HOH HOH . G 4 HOH A 37 332 60 HOH HOH . G 4 HOH A 38 333 61 HOH HOH . G 4 HOH A 39 334 63 HOH HOH . G 4 HOH A 40 335 65 HOH HOH . G 4 HOH A 41 336 66 HOH HOH . G 4 HOH A 42 337 71 HOH HOH . G 4 HOH A 43 338 75 HOH HOH . G 4 HOH A 44 339 76 HOH HOH . G 4 HOH A 45 340 78 HOH HOH . G 4 HOH A 46 341 80 HOH HOH . G 4 HOH A 47 342 81 HOH HOH . G 4 HOH A 48 343 84 HOH HOH . G 4 HOH A 49 344 85 HOH HOH . G 4 HOH A 50 345 86 HOH HOH . G 4 HOH A 51 346 89 HOH HOH . G 4 HOH A 52 347 91 HOH HOH . G 4 HOH A 53 348 92 HOH HOH . G 4 HOH A 54 349 94 HOH HOH . G 4 HOH A 55 350 95 HOH HOH . G 4 HOH A 56 351 100 HOH HOH . G 4 HOH A 57 352 103 HOH HOH . G 4 HOH A 58 353 105 HOH HOH . G 4 HOH A 59 354 106 HOH HOH . G 4 HOH A 60 355 108 HOH HOH . G 4 HOH A 61 356 112 HOH HOH . G 4 HOH A 62 357 113 HOH HOH . G 4 HOH A 63 358 119 HOH HOH . G 4 HOH A 64 359 120 HOH HOH . G 4 HOH A 65 360 121 HOH HOH . G 4 HOH A 66 361 123 HOH HOH . G 4 HOH A 67 362 125 HOH HOH . G 4 HOH A 68 363 127 HOH HOH . G 4 HOH A 69 364 128 HOH HOH . G 4 HOH A 70 365 130 HOH HOH . G 4 HOH A 71 366 131 HOH HOH . G 4 HOH A 72 367 134 HOH HOH . G 4 HOH A 73 368 136 HOH HOH . G 4 HOH A 74 369 137 HOH HOH . G 4 HOH A 75 370 139 HOH HOH . G 4 HOH A 76 371 142 HOH HOH . G 4 HOH A 77 372 143 HOH HOH . G 4 HOH A 78 373 145 HOH HOH . G 4 HOH A 79 374 146 HOH HOH . G 4 HOH A 80 375 147 HOH HOH . G 4 HOH A 81 376 148 HOH HOH . G 4 HOH A 82 377 149 HOH HOH . G 4 HOH A 83 378 150 HOH HOH . G 4 HOH A 84 379 152 HOH HOH . G 4 HOH A 85 380 154 HOH HOH . G 4 HOH A 86 381 156 HOH HOH . G 4 HOH A 87 382 157 HOH HOH . G 4 HOH A 88 383 159 HOH HOH . G 4 HOH A 89 384 161 HOH HOH . G 4 HOH A 90 385 162 HOH HOH . G 4 HOH A 91 386 163 HOH HOH . G 4 HOH A 92 387 175 HOH HOH . G 4 HOH A 93 388 183 HOH HOH . G 4 HOH A 94 389 184 HOH HOH . G 4 HOH A 95 390 185 HOH HOH . G 4 HOH A 96 391 187 HOH HOH . G 4 HOH A 97 392 192 HOH HOH . G 4 HOH A 98 393 193 HOH HOH . G 4 HOH A 99 394 194 HOH HOH . G 4 HOH A 100 395 195 HOH HOH . G 4 HOH A 101 396 196 HOH HOH . G 4 HOH A 102 397 197 HOH HOH . G 4 HOH A 103 398 200 HOH HOH . G 4 HOH A 104 399 203 HOH HOH . G 4 HOH A 105 400 204 HOH HOH . G 4 HOH A 106 401 206 HOH HOH . G 4 HOH A 107 402 207 HOH HOH . G 4 HOH A 108 403 208 HOH HOH . G 4 HOH A 109 404 209 HOH HOH . G 4 HOH A 110 405 210 HOH HOH . G 4 HOH A 111 406 212 HOH HOH . G 4 HOH A 112 407 213 HOH HOH . G 4 HOH A 113 408 218 HOH HOH . G 4 HOH A 114 409 219 HOH HOH . G 4 HOH A 115 410 220 HOH HOH . G 4 HOH A 116 411 222 HOH HOH . G 4 HOH A 117 412 223 HOH HOH . G 4 HOH A 118 413 224 HOH HOH . G 4 HOH A 119 414 225 HOH HOH . G 4 HOH A 120 415 226 HOH HOH . G 4 HOH A 121 416 227 HOH HOH . G 4 HOH A 122 417 228 HOH HOH . G 4 HOH A 123 418 249 HOH HOH . G 4 HOH A 124 419 250 HOH HOH . G 4 HOH A 125 420 251 HOH HOH . G 4 HOH A 126 421 253 HOH HOH . G 4 HOH A 127 422 254 HOH HOH . G 4 HOH A 128 423 255 HOH HOH . G 4 HOH A 129 424 256 HOH HOH . G 4 HOH A 130 425 257 HOH HOH . G 4 HOH A 131 426 258 HOH HOH . G 4 HOH A 132 427 259 HOH HOH . G 4 HOH A 133 428 260 HOH HOH . G 4 HOH A 134 429 261 HOH HOH . G 4 HOH A 135 430 262 HOH HOH . G 4 HOH A 136 431 263 HOH HOH . G 4 HOH A 137 432 264 HOH HOH . G 4 HOH A 138 433 265 HOH HOH . G 4 HOH A 139 434 266 HOH HOH . G 4 HOH A 140 435 267 HOH HOH . G 4 HOH A 141 436 268 HOH HOH . G 4 HOH A 142 437 269 HOH HOH . G 4 HOH A 143 438 270 HOH HOH . G 4 HOH A 144 439 271 HOH HOH . G 4 HOH A 145 440 272 HOH HOH . G 4 HOH A 146 441 273 HOH HOH . G 4 HOH A 147 442 274 HOH HOH . G 4 HOH A 148 443 275 HOH HOH . G 4 HOH A 149 444 276 HOH HOH . G 4 HOH A 150 445 277 HOH HOH . G 4 HOH A 151 446 278 HOH HOH . G 4 HOH A 152 447 279 HOH HOH . G 4 HOH A 153 448 280 HOH HOH . H 4 HOH B 1 294 1 HOH HOH . H 4 HOH B 2 295 3 HOH HOH . H 4 HOH B 3 296 296 HOH HOH . H 4 HOH B 4 297 4 HOH HOH . H 4 HOH B 5 298 10 HOH HOH . H 4 HOH B 6 299 12 HOH HOH . H 4 HOH B 7 300 300 HOH HOH . H 4 HOH B 8 301 301 HOH HOH . H 4 HOH B 9 302 302 HOH HOH . H 4 HOH B 10 303 303 HOH HOH . H 4 HOH B 11 304 304 HOH HOH . H 4 HOH B 12 305 305 HOH HOH . H 4 HOH B 13 306 306 HOH HOH . H 4 HOH B 14 307 307 HOH HOH . H 4 HOH B 15 308 13 HOH HOH . H 4 HOH B 16 309 14 HOH HOH . H 4 HOH B 17 310 15 HOH HOH . H 4 HOH B 18 311 16 HOH HOH . H 4 HOH B 19 312 17 HOH HOH . H 4 HOH B 20 313 313 HOH HOH . H 4 HOH B 21 314 314 HOH HOH . H 4 HOH B 22 315 315 HOH HOH . H 4 HOH B 23 316 316 HOH HOH . H 4 HOH B 24 317 317 HOH HOH . H 4 HOH B 25 318 318 HOH HOH . H 4 HOH B 26 319 319 HOH HOH . H 4 HOH B 27 320 19 HOH HOH . H 4 HOH B 28 321 20 HOH HOH . H 4 HOH B 29 322 22 HOH HOH . H 4 HOH B 30 323 23 HOH HOH . H 4 HOH B 31 324 25 HOH HOH . H 4 HOH B 32 325 325 HOH HOH . H 4 HOH B 33 326 26 HOH HOH . H 4 HOH B 34 327 327 HOH HOH . H 4 HOH B 35 328 27 HOH HOH . H 4 HOH B 36 329 329 HOH HOH . H 4 HOH B 37 330 29 HOH HOH . H 4 HOH B 38 331 331 HOH HOH . H 4 HOH B 39 332 332 HOH HOH . H 4 HOH B 40 333 333 HOH HOH . H 4 HOH B 41 334 31 HOH HOH . H 4 HOH B 42 335 32 HOH HOH . H 4 HOH B 43 336 33 HOH HOH . H 4 HOH B 44 337 34 HOH HOH . H 4 HOH B 45 338 35 HOH HOH . H 4 HOH B 46 339 36 HOH HOH . H 4 HOH B 47 340 37 HOH HOH . H 4 HOH B 48 341 38 HOH HOH . H 4 HOH B 49 342 39 HOH HOH . H 4 HOH B 50 343 40 HOH HOH . H 4 HOH B 51 344 41 HOH HOH . H 4 HOH B 52 345 43 HOH HOH . H 4 HOH B 53 346 45 HOH HOH . H 4 HOH B 54 347 46 HOH HOH . H 4 HOH B 55 348 49 HOH HOH . H 4 HOH B 56 349 50 HOH HOH . H 4 HOH B 57 350 51 HOH HOH . H 4 HOH B 58 351 52 HOH HOH . H 4 HOH B 59 352 56 HOH HOH . H 4 HOH B 60 353 62 HOH HOH . H 4 HOH B 61 354 64 HOH HOH . H 4 HOH B 62 355 67 HOH HOH . H 4 HOH B 63 356 68 HOH HOH . H 4 HOH B 64 357 69 HOH HOH . H 4 HOH B 65 358 70 HOH HOH . H 4 HOH B 66 359 72 HOH HOH . H 4 HOH B 67 360 73 HOH HOH . H 4 HOH B 68 361 74 HOH HOH . H 4 HOH B 69 362 77 HOH HOH . H 4 HOH B 70 363 79 HOH HOH . H 4 HOH B 71 364 82 HOH HOH . H 4 HOH B 72 365 83 HOH HOH . H 4 HOH B 73 366 87 HOH HOH . H 4 HOH B 74 367 88 HOH HOH . H 4 HOH B 75 368 90 HOH HOH . H 4 HOH B 76 369 93 HOH HOH . H 4 HOH B 77 370 96 HOH HOH . H 4 HOH B 78 371 97 HOH HOH . H 4 HOH B 79 372 98 HOH HOH . H 4 HOH B 80 373 99 HOH HOH . H 4 HOH B 81 374 101 HOH HOH . H 4 HOH B 82 375 102 HOH HOH . H 4 HOH B 83 376 104 HOH HOH . H 4 HOH B 84 377 107 HOH HOH . H 4 HOH B 85 378 109 HOH HOH . H 4 HOH B 86 379 110 HOH HOH . H 4 HOH B 87 380 111 HOH HOH . H 4 HOH B 88 381 114 HOH HOH . H 4 HOH B 89 382 115 HOH HOH . H 4 HOH B 90 383 116 HOH HOH . H 4 HOH B 91 384 117 HOH HOH . H 4 HOH B 92 385 118 HOH HOH . H 4 HOH B 93 386 122 HOH HOH . H 4 HOH B 94 387 124 HOH HOH . H 4 HOH B 95 388 126 HOH HOH . H 4 HOH B 96 389 129 HOH HOH . H 4 HOH B 97 390 132 HOH HOH . H 4 HOH B 98 391 133 HOH HOH . H 4 HOH B 99 392 135 HOH HOH . H 4 HOH B 100 393 138 HOH HOH . H 4 HOH B 101 394 140 HOH HOH . H 4 HOH B 102 395 141 HOH HOH . H 4 HOH B 103 396 144 HOH HOH . H 4 HOH B 104 397 151 HOH HOH . H 4 HOH B 105 398 153 HOH HOH . H 4 HOH B 106 399 155 HOH HOH . H 4 HOH B 107 400 158 HOH HOH . H 4 HOH B 108 401 160 HOH HOH . H 4 HOH B 109 402 164 HOH HOH . H 4 HOH B 110 403 165 HOH HOH . H 4 HOH B 111 404 166 HOH HOH . H 4 HOH B 112 405 167 HOH HOH . H 4 HOH B 113 406 168 HOH HOH . H 4 HOH B 114 407 169 HOH HOH . H 4 HOH B 115 408 170 HOH HOH . H 4 HOH B 116 409 171 HOH HOH . H 4 HOH B 117 410 172 HOH HOH . H 4 HOH B 118 411 173 HOH HOH . H 4 HOH B 119 412 174 HOH HOH . H 4 HOH B 120 413 176 HOH HOH . H 4 HOH B 121 414 177 HOH HOH . H 4 HOH B 122 415 178 HOH HOH . H 4 HOH B 123 416 179 HOH HOH . H 4 HOH B 124 417 180 HOH HOH . H 4 HOH B 125 418 181 HOH HOH . H 4 HOH B 126 419 182 HOH HOH . H 4 HOH B 127 420 186 HOH HOH . H 4 HOH B 128 421 189 HOH HOH . H 4 HOH B 129 422 190 HOH HOH . H 4 HOH B 130 423 191 HOH HOH . H 4 HOH B 131 424 198 HOH HOH . H 4 HOH B 132 425 199 HOH HOH . H 4 HOH B 133 426 201 HOH HOH . H 4 HOH B 134 427 202 HOH HOH . H 4 HOH B 135 428 205 HOH HOH . H 4 HOH B 136 429 211 HOH HOH . H 4 HOH B 137 430 214 HOH HOH . H 4 HOH B 138 431 215 HOH HOH . H 4 HOH B 139 432 216 HOH HOH . H 4 HOH B 140 433 217 HOH HOH . H 4 HOH B 141 434 221 HOH HOH . H 4 HOH B 142 435 229 HOH HOH . H 4 HOH B 143 436 230 HOH HOH . H 4 HOH B 144 437 231 HOH HOH . H 4 HOH B 145 438 232 HOH HOH . H 4 HOH B 146 439 233 HOH HOH . H 4 HOH B 147 440 234 HOH HOH . H 4 HOH B 148 441 235 HOH HOH . H 4 HOH B 149 442 236 HOH HOH . H 4 HOH B 150 443 237 HOH HOH . H 4 HOH B 151 444 238 HOH HOH . H 4 HOH B 152 445 239 HOH HOH . H 4 HOH B 153 446 240 HOH HOH . H 4 HOH B 154 447 241 HOH HOH . H 4 HOH B 155 448 242 HOH HOH . H 4 HOH B 156 449 243 HOH HOH . H 4 HOH B 157 450 245 HOH HOH . H 4 HOH B 158 451 247 HOH HOH . H 4 HOH B 159 452 248 HOH HOH . H 4 HOH B 160 453 252 HOH HOH . H 4 HOH B 161 454 281 HOH HOH . H 4 HOH B 162 455 282 HOH HOH . H 4 HOH B 163 456 283 HOH HOH . H 4 HOH B 164 457 284 HOH HOH . H 4 HOH B 165 458 285 HOH HOH . H 4 HOH B 166 459 286 HOH HOH . H 4 HOH B 167 460 287 HOH HOH . H 4 HOH B 168 461 288 HOH HOH . H 4 HOH B 169 462 289 HOH HOH . H 4 HOH B 170 463 290 HOH HOH . H 4 HOH B 171 464 291 HOH HOH . H 4 HOH B 172 465 292 HOH HOH . H 4 HOH B 173 466 293 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 45.102 34.285 9.657 1 29.25 ? C1 GOL 294 A 1 HETATM 2 O O1 GOL . . . D 3 45.487 33.5 8.53 1 30.97 ? O1 GOL 294 A 1 HETATM 3 C C2 GOL . . . D 3 46.149 34.104 10.756 1 29.1 ? C2 GOL 294 A 1 HETATM 4 O O2 GOL . . . D 3 46.703 32.79 10.668 1 28.49 ? O2 GOL 294 A 1 HETATM 5 C C3 GOL . . . D 3 45.502 34.342 12.129 1 28.74 ? C3 GOL 294 A 1 HETATM 6 O O3 GOL . . . D 3 44.093 34.166 12.054 1 28 ? O3 GOL 294 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 686 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #