data_3PUP
#
_model_server_result.job_id            GtZopnjWPh89EyN4tNii8A 
_model_server_result.datetime_utc      '2025-02-05 16:50:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pup 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":421}' 
#
_entry.id    3PUP 
#
_exptl.entry_id    3PUP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              572.945 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Ruthenium octasporine' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3PUP 
_cell.length_a            83.32 
_cell.length_b            84.3 
_cell.length_c            178.12 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PUP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C 1 1 
B,D 2 1 
A,B,C,D 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C24 H16 Cl N6 O3 Ru' 
_chem_comp.formula_weight    572.945 
_chem_comp.id                OS1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Ruthenium octasporine' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 OS1 sing 235 n y 
C1 C6 OS1 sing 236 n n 
C2 C3 OS1 sing 237 n n 
C3 N5 OS1 sing 238 n n 
C3 O4 OS1 doub 239 n n 
N5 HN5 OS1 sing 240 n n 
C6 N5 OS1 sing 241 n n 
O7 C6 OS1 doub 242 n n 
C8 C2 OS1 doub 243 n y 
C8 C23 OS1 sing 244 n y 
C9 C8 OS1 sing 245 n y 
C10 C9 OS1 doub 246 n y 
C10 C11 OS1 sing 247 n y 
C11 C1 OS1 doub 248 n y 
C12 C11 OS1 sing 249 n y 
C12 C35 OS1 sing 250 n y 
C13 C12 OS1 doub 251 n y 
C13 N14 OS1 sing 252 n y 
N14 C10 OS1 sing 253 n y 
RU15 N14 OS1 sing 254 n n 
RU15 N24 OS1 sing 255 n n 
RU15 N19 OS1 sing 256 n n 
CL16 RU15 OS1 sing 257 n n 
C17 RU15 OS1 sing 258 n n 
O18 C17 OS1 trip 259 n n 
N19 C9 OS1 sing 260 n y 
N19 C20 OS1 doub 261 n y 
C20 C21 OS1 sing 262 n y 
C20 H20 OS1 sing 263 n n 
C21 N22 OS1 sing 264 n n 
C21 C23 OS1 doub 265 n y 
N22 HN22 OS1 sing 266 n n 
N22 HN2A OS1 sing 267 n n 
C23 H23 OS1 sing 268 n n 
N24 HN24 OS1 sing 269 n n 
C25 N24 OS1 sing 270 n n 
C25 H25 OS1 sing 271 n n 
C25 H25A OS1 sing 272 n n 
C26 C25 OS1 sing 273 n n 
N27 RU15 OS1 sing 274 n n 
N27 C26 OS1 doub 275 n y 
C28 N27 OS1 sing 276 n y 
C28 H28 OS1 sing 277 n n 
C29 C28 OS1 doub 278 n y 
C29 C30 OS1 sing 279 n y 
C29 H29 OS1 sing 280 n n 
C30 C31 OS1 doub 281 n y 
C30 H30 OS1 sing 282 n n 
C31 C26 OS1 sing 283 n y 
C31 H31 OS1 sing 284 n n 
C32 C13 OS1 sing 285 n y 
C32 C33 OS1 doub 286 n y 
C32 H32 OS1 sing 287 n n 
C33 C34 OS1 sing 288 n y 
C33 H33 OS1 sing 289 n n 
C34 C35 OS1 doub 290 n y 
C34 H34 OS1 sing 291 n n 
C35 H35 OS1 sing 292 n n 
#
_atom_sites.entry_id                     3PUP 
_atom_sites.fract_transf_matrix[1][1]    0.012002 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011862 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005614 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 OS1 A 1 421 1 OS1 OS1 . 
D 2 OS1 B 1 421 2 OS1 OS1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OS1 . . . D 2 2.751 8.24 -35.657 1 49.59 ? C1 OS1 421 B 1 
HETATM 2 C C2 OS1 . . . D 2 2.069 7.201 -36.325 1 45.95 ? C2 OS1 421 B 1 
HETATM 3 C C3 OS1 . . . D 2 1.625 7.681 -37.561 1 45.57 ? C3 OS1 421 B 1 
HETATM 4 O O4 OS1 . . . D 2 0.953 7.033 -38.417 1 49.89 ? O4 OS1 421 B 1 
HETATM 5 N N5 OS1 . . . D 2 2.03 8.967 -37.679 1 33 ? N5 OS1 421 B 1 
HETATM 6 C C6 OS1 . . . D 2 2.7 9.314 -36.544 1 43.53 ? C6 OS1 421 B 1 
HETATM 7 O O7 OS1 . . . D 2 3.199 10.444 -36.311 1 66.19 ? O7 OS1 421 B 1 
HETATM 8 C C8 OS1 . . . D 2 1.901 5.928 -35.758 1 47.12 ? C8 OS1 421 B 1 
HETATM 9 C C9 OS1 . . . D 2 2.452 5.732 -34.459 1 23.23 ? C9 OS1 421 B 1 
HETATM 10 C C10 OS1 . . . D 2 3.141 6.745 -33.794 1 40.1 ? C10 OS1 421 B 1 
HETATM 11 C C11 OS1 . . . D 2 3.297 8.021 -34.366 1 56.91 ? C11 OS1 421 B 1 
HETATM 12 C C12 OS1 . . . D 2 4.029 8.722 -33.398 1 55.46 ? C12 OS1 421 B 1 
HETATM 13 C C13 OS1 . . . D 2 4.243 7.808 -32.334 1 36.29 ? C13 OS1 421 B 1 
HETATM 14 N N14 OS1 . . . D 2 3.689 6.66 -32.601 1 37.72 ? N14 OS1 421 B 1 
HETATM 15 RU RU15 OS1 . . . D 2 3.432 4.72 -32.029 1 52.5 ? RU15 OS1 421 B 1 
HETATM 16 CL CL16 OS1 . . . D 2 3.332 2.373 -31.693 1 47.84 ? CL16 OS1 421 B 1 
HETATM 17 C C17 OS1 . . . D 2 2.044 5.252 -31.038 1 51.19 ? C17 OS1 421 B 1 
HETATM 18 O O18 OS1 . . . D 2 1.234 5.638 -30.345 1 89.14 ? O18 OS1 421 B 1 
HETATM 19 N N19 OS1 . . . D 2 2.367 4.511 -33.79 1 46.44 ? N19 OS1 421 B 1 
HETATM 20 C C20 OS1 . . . D 2 1.724 3.471 -34.419 1 59.08 ? C20 OS1 421 B 1 
HETATM 21 C C21 OS1 . . . D 2 1.142 3.627 -35.719 1 64.19 ? C21 OS1 421 B 1 
HETATM 22 N N22 OS1 . . . D 2 0.447 2.61 -36.422 1 51.07 ? N22 OS1 421 B 1 
HETATM 23 C C23 OS1 . . . D 2 1.231 4.862 -36.406 1 36.42 ? C23 OS1 421 B 1 
HETATM 24 N N24 OS1 . . . D 2 5.129 4.033 -33.112 1 19.95 ? N24 OS1 421 B 1 
HETATM 25 C C25 OS1 . . . D 2 6.036 4.99 -32.492 1 41.34 ? C25 OS1 421 B 1 
HETATM 26 C C26 OS1 . . . D 2 5.944 4.884 -31.014 1 68.63 ? C26 OS1 421 B 1 
HETATM 27 N N27 OS1 . . . D 2 4.726 4.788 -30.458 1 43.01 ? N27 OS1 421 B 1 
HETATM 28 C C28 OS1 . . . D 2 4.704 4.673 -29.139 1 61.36 ? C28 OS1 421 B 1 
HETATM 29 C C29 OS1 . . . D 2 5.818 4.67 -28.336 1 76.73 ? C29 OS1 421 B 1 
HETATM 30 C C30 OS1 . . . D 2 7.063 4.771 -28.913 1 53.68 ? C30 OS1 421 B 1 
HETATM 31 C C31 OS1 . . . D 2 7.1 4.881 -30.267 1 71.71 ? C31 OS1 421 B 1 
HETATM 32 C C32 OS1 . . . D 2 4.939 8.168 -31.178 1 47.57 ? C32 OS1 421 B 1 
HETATM 33 C C33 OS1 . . . D 2 5.437 9.503 -31.121 1 66.84 ? C33 OS1 421 B 1 
HETATM 34 C C34 OS1 . . . D 2 5.231 10.43 -32.183 1 49.37 ? C34 OS1 421 B 1 
HETATM 35 C C35 OS1 . . . D 2 4.521 10.047 -33.35 1 45.74 ? C35 OS1 421 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           35 
#