data_3PUV # _model_server_result.job_id qYrGc3G5Kj1PkLM4WWnlZQ _model_server_result.datetime_utc '2024-11-21 13:53:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3puv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":3001}' # _entry.id 3PUV # _exptl.entry_id 3PUV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.939 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'VANADATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 85.58 _cell.angle_beta 78.71 _cell.angle_gamma 72.69 _cell.entry_id 3PUV _cell.length_a 81.786 _cell.length_b 97.125 _cell.length_c 112.791 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PUV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 T N N ? 10 W N N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n F GLC 1 C 1 GLC X 2000 MAL 5 n F GLC 2 C 2 GLC X 2000 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 F O4 GLC . C GLC 1 1_555 F C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 sing metalc ? metalc1 D OG SER 43 A SER 43 1_555 R MG MG . A MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc2 D OE1 GLN 82 A GLN 82 1_555 R MG MG . A MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc3 AA O HOH . A HOH 382 1_555 R MG MG . A MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? metalc ? metalc4 AA O HOH . A HOH 383 1_555 R MG MG . A MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc5 R MG MG . A MG 1501 1_555 S O2B ADP . A ADP 2501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc6 R MG MG . A MG 1501 1_555 T O3 VO4 . A VO4 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc7 S O3B ADP . A ADP 2501 1_555 T V VO4 . A VO4 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc8 E OG SER 43 B SER 43 1_555 U MG MG . B MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc9 E OE1 GLN 82 B GLN 82 1_555 U MG MG . B MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc10 BA O HOH . B HOH 382 1_555 U MG MG . B MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc11 BA O HOH . B HOH 383 1_555 U MG MG . B MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc12 U MG MG . B MG 1502 1_555 V O2B ADP . B ADP 2502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc13 U MG MG . B MG 1502 1_555 W O3 VO4 . B VO4 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? metalc ? metalc14 V O3B ADP . B ADP 2502 1_555 W V VO4 . B VO4 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? # _chem_comp.formula 'O4 V -3' _chem_comp.formula_weight 114.939 _chem_comp.id VO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'VANADATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag V O1 VO4 doub 650 n n V O2 VO4 sing 651 n n V O3 VO4 sing 652 n n V O4 VO4 sing 653 n n # _atom_sites.entry_id 3PUV _atom_sites.fract_transf_matrix[1][1] 0.012227 _atom_sites.fract_transf_matrix[1][2] -0.003811 _atom_sites.fract_transf_matrix[1][3] -0.002365 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010784 _atom_sites.fract_transf_matrix[2][3] -0.000217 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009043 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 6 PGV F 1 4001 4001 PGV PGV . H 6 PGV F 1 4002 4002 PGV PGV . I 6 PGV F 1 4008 4008 PGV PGV . J 6 PGV F 1 4010 4010 PGV PGV . K 7 UMQ F 1 5004 5004 UMQ UMQ . L 6 PGV G 1 4003 4003 PGV PGV . M 6 PGV G 1 4004 4004 PGV PGV . N 6 PGV G 1 4005 4005 PGV PGV . O 6 PGV G 1 4006 4006 PGV PGV . P 6 PGV G 1 4007 4007 PGV PGV . Q 6 PGV G 1 4009 4009 PGV PGV . R 8 MG A 1 1501 1501 MG MG . S 9 ADP A 1 2501 2501 ADP ADP . T 10 VO4 A 1 3001 3001 VO4 VO4 . U 8 MG B 1 1502 1502 MG MG . V 9 ADP B 1 2502 2502 ADP ADP . W 10 VO4 B 1 3002 3002 VO4 VO4 . X 11 HOH E 1 379 5 HOH HOH . X 11 HOH E 2 380 6 HOH HOH . X 11 HOH E 3 381 8 HOH HOH . X 11 HOH E 4 382 9 HOH HOH . X 11 HOH E 5 383 10 HOH HOH . X 11 HOH E 6 384 18 HOH HOH . X 11 HOH E 7 385 19 HOH HOH . X 11 HOH E 8 386 20 HOH HOH . X 11 HOH E 9 387 21 HOH HOH . X 11 HOH E 10 388 22 HOH HOH . X 11 HOH E 11 389 23 HOH HOH . X 11 HOH E 12 390 24 HOH HOH . X 11 HOH E 13 391 25 HOH HOH . X 11 HOH E 14 392 26 HOH HOH . X 11 HOH E 15 393 27 HOH HOH . X 11 HOH E 16 394 59 HOH HOH . X 11 HOH E 17 395 60 HOH HOH . X 11 HOH E 18 396 61 HOH HOH . X 11 HOH E 19 397 63 HOH HOH . X 11 HOH E 20 398 68 HOH HOH . X 11 HOH E 21 399 71 HOH HOH . X 11 HOH E 22 400 81 HOH HOH . X 11 HOH E 23 401 82 HOH HOH . X 11 HOH E 24 402 83 HOH HOH . X 11 HOH E 25 403 84 HOH HOH . X 11 HOH E 26 404 96 HOH HOH . X 11 HOH E 27 405 97 HOH HOH . X 11 HOH E 28 406 98 HOH HOH . X 11 HOH E 29 407 100 HOH HOH . X 11 HOH E 30 408 101 HOH HOH . X 11 HOH E 31 409 103 HOH HOH . X 11 HOH E 32 410 104 HOH HOH . X 11 HOH E 33 411 106 HOH HOH . X 11 HOH E 34 412 146 HOH HOH . X 11 HOH E 35 413 149 HOH HOH . X 11 HOH E 36 414 150 HOH HOH . X 11 HOH E 37 415 151 HOH HOH . X 11 HOH E 38 416 155 HOH HOH . X 11 HOH E 39 417 156 HOH HOH . X 11 HOH E 40 418 157 HOH HOH . X 11 HOH E 41 419 158 HOH HOH . X 11 HOH E 42 420 159 HOH HOH . X 11 HOH E 43 421 162 HOH HOH . X 11 HOH E 44 422 163 HOH HOH . X 11 HOH E 45 423 164 HOH HOH . X 11 HOH E 46 424 165 HOH HOH . X 11 HOH E 47 425 166 HOH HOH . X 11 HOH E 48 426 170 HOH HOH . X 11 HOH E 49 427 171 HOH HOH . Y 11 HOH F 1 515 43 HOH HOH . Y 11 HOH F 2 516 51 HOH HOH . Y 11 HOH F 3 517 53 HOH HOH . Y 11 HOH F 4 518 54 HOH HOH . Y 11 HOH F 5 519 55 HOH HOH . Y 11 HOH F 6 520 56 HOH HOH . Y 11 HOH F 7 521 62 HOH HOH . Y 11 HOH F 8 522 67 HOH HOH . Y 11 HOH F 9 523 70 HOH HOH . Y 11 HOH F 10 524 90 HOH HOH . Y 11 HOH F 11 525 91 HOH HOH . Y 11 HOH F 12 526 95 HOH HOH . Y 11 HOH F 13 527 105 HOH HOH . Y 11 HOH F 14 528 107 HOH HOH . Y 11 HOH F 15 529 108 HOH HOH . Y 11 HOH F 16 530 109 HOH HOH . Y 11 HOH F 17 531 110 HOH HOH . Y 11 HOH F 18 532 111 HOH HOH . Y 11 HOH F 19 533 112 HOH HOH . Y 11 HOH F 20 534 113 HOH HOH . Y 11 HOH F 21 535 135 HOH HOH . Y 11 HOH F 22 536 141 HOH HOH . Y 11 HOH F 23 537 143 HOH HOH . Y 11 HOH F 24 538 145 HOH HOH . Y 11 HOH F 25 539 147 HOH HOH . Y 11 HOH F 26 540 148 HOH HOH . Y 11 HOH F 27 541 153 HOH HOH . Y 11 HOH F 28 542 160 HOH HOH . Y 11 HOH F 29 543 161 HOH HOH . Y 11 HOH F 30 544 172 HOH HOH . Y 11 HOH F 31 545 180 HOH HOH . Y 11 HOH F 32 546 188 HOH HOH . Y 11 HOH F 33 547 190 HOH HOH . Y 11 HOH F 34 548 191 HOH HOH . Z 11 HOH G 1 297 7 HOH HOH . Z 11 HOH G 2 298 11 HOH HOH . Z 11 HOH G 3 299 12 HOH HOH . Z 11 HOH G 4 300 13 HOH HOH . Z 11 HOH G 5 301 14 HOH HOH . Z 11 HOH G 6 302 15 HOH HOH . Z 11 HOH G 7 303 16 HOH HOH . Z 11 HOH G 8 304 17 HOH HOH . Z 11 HOH G 9 305 57 HOH HOH . Z 11 HOH G 10 306 58 HOH HOH . Z 11 HOH G 11 307 64 HOH HOH . Z 11 HOH G 12 308 65 HOH HOH . Z 11 HOH G 13 309 69 HOH HOH . Z 11 HOH G 14 310 85 HOH HOH . Z 11 HOH G 15 311 86 HOH HOH . Z 11 HOH G 16 312 87 HOH HOH . Z 11 HOH G 17 313 88 HOH HOH . Z 11 HOH G 18 314 89 HOH HOH . Z 11 HOH G 19 315 92 HOH HOH . Z 11 HOH G 20 316 99 HOH HOH . Z 11 HOH G 21 317 102 HOH HOH . Z 11 HOH G 22 318 114 HOH HOH . Z 11 HOH G 23 319 144 HOH HOH . Z 11 HOH G 24 320 154 HOH HOH . Z 11 HOH G 25 321 167 HOH HOH . Z 11 HOH G 26 322 168 HOH HOH . Z 11 HOH G 27 323 169 HOH HOH . Z 11 HOH G 28 324 175 HOH HOH . Z 11 HOH G 29 325 187 HOH HOH . Z 11 HOH G 30 326 189 HOH HOH . Z 11 HOH G 31 327 192 HOH HOH . AA 11 HOH A 1 382 1 HOH HOH . AA 11 HOH A 2 383 2 HOH HOH . AA 11 HOH A 3 384 28 HOH HOH . AA 11 HOH A 4 385 30 HOH HOH . AA 11 HOH A 5 386 36 HOH HOH . AA 11 HOH A 6 387 37 HOH HOH . AA 11 HOH A 7 388 38 HOH HOH . AA 11 HOH A 8 389 40 HOH HOH . AA 11 HOH A 9 390 41 HOH HOH . AA 11 HOH A 10 391 42 HOH HOH . AA 11 HOH A 11 392 44 HOH HOH . AA 11 HOH A 12 393 47 HOH HOH . AA 11 HOH A 13 394 48 HOH HOH . AA 11 HOH A 14 395 49 HOH HOH . AA 11 HOH A 15 396 50 HOH HOH . AA 11 HOH A 16 397 66 HOH HOH . AA 11 HOH A 17 398 72 HOH HOH . AA 11 HOH A 18 399 76 HOH HOH . AA 11 HOH A 19 400 80 HOH HOH . AA 11 HOH A 20 401 116 HOH HOH . AA 11 HOH A 21 402 117 HOH HOH . AA 11 HOH A 22 403 119 HOH HOH . AA 11 HOH A 23 404 120 HOH HOH . AA 11 HOH A 24 405 121 HOH HOH . AA 11 HOH A 25 406 124 HOH HOH . AA 11 HOH A 26 407 126 HOH HOH . AA 11 HOH A 27 408 127 HOH HOH . AA 11 HOH A 28 409 128 HOH HOH . AA 11 HOH A 29 410 137 HOH HOH . AA 11 HOH A 30 411 138 HOH HOH . AA 11 HOH A 31 412 173 HOH HOH . AA 11 HOH A 32 413 174 HOH HOH . AA 11 HOH A 33 414 176 HOH HOH . AA 11 HOH A 34 415 177 HOH HOH . AA 11 HOH A 35 416 181 HOH HOH . AA 11 HOH A 36 417 182 HOH HOH . AA 11 HOH A 37 418 183 HOH HOH . AA 11 HOH A 38 419 185 HOH HOH . BA 11 HOH B 1 382 3 HOH HOH . BA 11 HOH B 2 383 4 HOH HOH . BA 11 HOH B 3 384 31 HOH HOH . BA 11 HOH B 4 385 32 HOH HOH . BA 11 HOH B 5 386 33 HOH HOH . BA 11 HOH B 6 387 35 HOH HOH . BA 11 HOH B 7 388 39 HOH HOH . BA 11 HOH B 8 389 45 HOH HOH . BA 11 HOH B 9 390 46 HOH HOH . BA 11 HOH B 10 391 73 HOH HOH . BA 11 HOH B 11 392 75 HOH HOH . BA 11 HOH B 12 393 78 HOH HOH . BA 11 HOH B 13 394 115 HOH HOH . BA 11 HOH B 14 395 118 HOH HOH . BA 11 HOH B 15 396 123 HOH HOH . BA 11 HOH B 16 397 125 HOH HOH . BA 11 HOH B 17 398 129 HOH HOH . BA 11 HOH B 18 399 130 HOH HOH . BA 11 HOH B 19 400 131 HOH HOH . BA 11 HOH B 20 401 132 HOH HOH . BA 11 HOH B 21 402 133 HOH HOH . BA 11 HOH B 22 403 134 HOH HOH . BA 11 HOH B 23 404 136 HOH HOH . BA 11 HOH B 24 405 139 HOH HOH . BA 11 HOH B 25 406 140 HOH HOH . BA 11 HOH B 26 407 179 HOH HOH . BA 11 HOH B 27 408 184 HOH HOH . BA 11 HOH B 28 409 186 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 V V VO4 . . . T 10 -16.043 2.244 7.8 1 20.45 ? V VO4 3001 A 1 HETATM 2 O O1 VO4 . . . T 10 -17.019 3.097 6.709 1 20.68 ? O1 VO4 3001 A 1 HETATM 3 O O2 VO4 . . . T 10 -15.475 0.938 6.913 1 21.83 ? O2 VO4 3001 A 1 HETATM 4 O O3 VO4 . . . T 10 -15.683 2.596 9.398 1 19.23 ? O3 VO4 3001 A 1 HETATM 5 O O4 VO4 . . . T 10 -14.34 3.389 7.204 1 18.72 ? O4 VO4 3001 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #