data_3PVH
#
_model_server_result.job_id            v7htZCzbqOyzvgGV3GuaMg 
_model_server_result.datetime_utc      '2025-03-06 06:54:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pvh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":306}' 
#
_entry.id    3PVH 
#
_exptl.entry_id    3PVH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3PVH 
_cell.length_a            46.871 
_cell.length_b            49.89 
_cell.length_c            76.511 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PVH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 K O HOH . A HOH 34 1_555 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? 
metalc ? metalc2 A OD2 ASP 21 A ASP 103 1_555 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     3PVH 
_atom_sites.fract_transf_matrix[1][1]    0.021335 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020044 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01307 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 300 300 CA CA . 
C 3 GOL A 1 303 303 GOL GOL . 
D 3 GOL A 1 304 304 GOL GOL . 
E 3 GOL A 1 305 305 GOL GOL . 
F 3 GOL A 1 306 306 GOL GOL . 
G 3 GOL A 1 307 307 GOL GOL . 
H 3 GOL A 1 308 308 GOL GOL . 
I 3 GOL A 1 309 309 GOL GOL . 
J 3 GOL A 1 310 310 GOL GOL . 
K 4 HOH A 1 1 1 HOH WAT . 
K 4 HOH A 2 2 2 HOH WAT . 
K 4 HOH A 3 3 3 HOH WAT . 
K 4 HOH A 4 4 4 HOH WAT . 
K 4 HOH A 5 5 5 HOH WAT . 
K 4 HOH A 6 6 6 HOH WAT . 
K 4 HOH A 7 7 7 HOH WAT . 
K 4 HOH A 8 8 8 HOH WAT . 
K 4 HOH A 9 9 9 HOH WAT . 
K 4 HOH A 10 10 10 HOH WAT . 
K 4 HOH A 11 11 11 HOH WAT . 
K 4 HOH A 12 12 12 HOH WAT . 
K 4 HOH A 13 13 13 HOH WAT . 
K 4 HOH A 14 14 14 HOH WAT . 
K 4 HOH A 15 15 15 HOH WAT . 
K 4 HOH A 16 16 16 HOH WAT . 
K 4 HOH A 17 17 17 HOH WAT . 
K 4 HOH A 18 18 18 HOH WAT . 
K 4 HOH A 19 19 19 HOH WAT . 
K 4 HOH A 20 20 20 HOH WAT . 
K 4 HOH A 21 21 21 HOH WAT . 
K 4 HOH A 22 22 22 HOH WAT . 
K 4 HOH A 23 23 23 HOH WAT . 
K 4 HOH A 24 24 24 HOH WAT . 
K 4 HOH A 25 25 25 HOH WAT . 
K 4 HOH A 26 26 26 HOH WAT . 
K 4 HOH A 27 27 27 HOH WAT . 
K 4 HOH A 28 28 28 HOH WAT . 
K 4 HOH A 29 29 29 HOH WAT . 
K 4 HOH A 30 30 30 HOH WAT . 
K 4 HOH A 31 31 31 HOH WAT . 
K 4 HOH A 32 32 32 HOH WAT . 
K 4 HOH A 33 33 33 HOH WAT . 
K 4 HOH A 34 34 34 HOH WAT . 
K 4 HOH A 35 35 35 HOH WAT . 
K 4 HOH A 36 36 36 HOH WAT . 
K 4 HOH A 37 37 37 HOH WAT . 
K 4 HOH A 38 38 38 HOH WAT . 
K 4 HOH A 39 39 39 HOH WAT . 
K 4 HOH A 40 40 40 HOH WAT . 
K 4 HOH A 41 41 41 HOH WAT . 
K 4 HOH A 42 42 42 HOH WAT . 
K 4 HOH A 43 43 43 HOH WAT . 
K 4 HOH A 44 44 44 HOH WAT . 
K 4 HOH A 45 45 45 HOH WAT . 
K 4 HOH A 46 46 46 HOH WAT . 
K 4 HOH A 47 47 47 HOH WAT . 
K 4 HOH A 48 48 48 HOH WAT . 
K 4 HOH A 49 49 49 HOH WAT . 
K 4 HOH A 50 50 50 HOH WAT . 
K 4 HOH A 51 51 51 HOH WAT . 
K 4 HOH A 52 52 52 HOH WAT . 
K 4 HOH A 53 53 53 HOH WAT . 
K 4 HOH A 54 54 54 HOH WAT . 
K 4 HOH A 55 55 55 HOH WAT . 
K 4 HOH A 56 56 56 HOH WAT . 
K 4 HOH A 57 57 57 HOH WAT . 
K 4 HOH A 58 58 58 HOH WAT . 
K 4 HOH A 59 59 59 HOH WAT . 
K 4 HOH A 60 60 60 HOH WAT . 
K 4 HOH A 61 61 61 HOH WAT . 
K 4 HOH A 62 62 62 HOH WAT . 
K 4 HOH A 63 63 63 HOH WAT . 
K 4 HOH A 64 64 64 HOH WAT . 
K 4 HOH A 65 65 65 HOH WAT . 
K 4 HOH A 66 66 66 HOH WAT . 
K 4 HOH A 67 67 67 HOH WAT . 
K 4 HOH A 68 68 68 HOH WAT . 
K 4 HOH A 69 69 69 HOH WAT . 
K 4 HOH A 70 70 70 HOH WAT . 
K 4 HOH A 71 71 71 HOH WAT . 
K 4 HOH A 72 72 72 HOH WAT . 
K 4 HOH A 73 73 73 HOH WAT . 
K 4 HOH A 74 74 74 HOH WAT . 
K 4 HOH A 75 75 75 HOH WAT . 
K 4 HOH A 76 76 76 HOH WAT . 
K 4 HOH A 77 77 77 HOH WAT . 
K 4 HOH A 78 78 78 HOH WAT . 
K 4 HOH A 79 79 79 HOH WAT . 
K 4 HOH A 80 80 80 HOH WAT . 
K 4 HOH A 81 81 81 HOH WAT . 
K 4 HOH A 82 82 82 HOH WAT . 
K 4 HOH A 83 236 83 HOH WAT . 
K 4 HOH A 84 237 84 HOH WAT . 
K 4 HOH A 85 238 85 HOH WAT . 
K 4 HOH A 86 239 86 HOH WAT . 
K 4 HOH A 87 240 87 HOH WAT . 
K 4 HOH A 88 241 88 HOH WAT . 
K 4 HOH A 89 242 89 HOH WAT . 
K 4 HOH A 90 243 90 HOH WAT . 
K 4 HOH A 91 244 91 HOH WAT . 
K 4 HOH A 92 245 92 HOH WAT . 
K 4 HOH A 93 246 93 HOH WAT . 
K 4 HOH A 94 247 94 HOH WAT . 
K 4 HOH A 95 248 95 HOH WAT . 
K 4 HOH A 96 249 96 HOH WAT . 
K 4 HOH A 97 250 97 HOH WAT . 
K 4 HOH A 98 251 98 HOH WAT . 
K 4 HOH A 99 252 99 HOH WAT . 
K 4 HOH A 100 253 100 HOH WAT . 
K 4 HOH A 101 254 101 HOH WAT . 
K 4 HOH A 102 255 102 HOH WAT . 
K 4 HOH A 103 256 103 HOH WAT . 
K 4 HOH A 104 257 104 HOH WAT . 
K 4 HOH A 105 258 105 HOH WAT . 
K 4 HOH A 106 259 106 HOH WAT . 
K 4 HOH A 107 260 107 HOH WAT . 
K 4 HOH A 108 261 108 HOH WAT . 
K 4 HOH A 109 262 109 HOH WAT . 
K 4 HOH A 110 263 110 HOH WAT . 
K 4 HOH A 111 264 111 HOH WAT . 
K 4 HOH A 112 265 112 HOH WAT . 
K 4 HOH A 113 266 113 HOH WAT . 
K 4 HOH A 114 267 114 HOH WAT . 
K 4 HOH A 115 268 115 HOH WAT . 
K 4 HOH A 116 269 116 HOH WAT . 
K 4 HOH A 117 270 117 HOH WAT . 
K 4 HOH A 118 271 118 HOH WAT . 
K 4 HOH A 119 272 119 HOH WAT . 
K 4 HOH A 120 273 120 HOH WAT . 
K 4 HOH A 121 274 121 HOH WAT . 
K 4 HOH A 122 275 122 HOH WAT . 
K 4 HOH A 123 276 123 HOH WAT . 
K 4 HOH A 124 277 124 HOH WAT . 
K 4 HOH A 125 278 125 HOH WAT . 
K 4 HOH A 126 279 126 HOH WAT . 
K 4 HOH A 127 280 127 HOH WAT . 
K 4 HOH A 128 281 128 HOH WAT . 
K 4 HOH A 129 282 129 HOH WAT . 
K 4 HOH A 130 283 130 HOH WAT . 
K 4 HOH A 131 284 131 HOH WAT . 
K 4 HOH A 132 285 132 HOH WAT . 
K 4 HOH A 133 286 133 HOH WAT . 
K 4 HOH A 134 287 134 HOH WAT . 
K 4 HOH A 135 288 135 HOH WAT . 
K 4 HOH A 136 289 136 HOH WAT . 
K 4 HOH A 137 290 137 HOH WAT . 
K 4 HOH A 138 291 138 HOH WAT . 
K 4 HOH A 139 292 139 HOH WAT . 
K 4 HOH A 140 293 140 HOH WAT . 
K 4 HOH A 141 294 141 HOH WAT . 
K 4 HOH A 142 295 142 HOH WAT . 
K 4 HOH A 143 296 143 HOH WAT . 
K 4 HOH A 144 297 144 HOH WAT . 
K 4 HOH A 145 298 145 HOH WAT . 
K 4 HOH A 146 299 146 HOH WAT . 
K 4 HOH A 147 301 147 HOH WAT . 
K 4 HOH A 148 302 148 HOH WAT . 
K 4 HOH A 149 311 149 HOH WAT . 
K 4 HOH A 150 312 150 HOH WAT . 
K 4 HOH A 151 313 151 HOH WAT . 
K 4 HOH A 152 314 152 HOH WAT . 
K 4 HOH A 153 315 153 HOH WAT . 
K 4 HOH A 154 316 154 HOH WAT . 
K 4 HOH A 155 317 155 HOH WAT . 
K 4 HOH A 156 318 156 HOH WAT . 
K 4 HOH A 157 319 157 HOH WAT . 
K 4 HOH A 158 320 158 HOH WAT . 
K 4 HOH A 159 321 159 HOH WAT . 
K 4 HOH A 160 322 160 HOH WAT . 
K 4 HOH A 161 323 161 HOH WAT . 
K 4 HOH A 162 324 162 HOH WAT . 
K 4 HOH A 163 325 163 HOH WAT . 
K 4 HOH A 164 326 164 HOH WAT . 
K 4 HOH A 165 327 165 HOH WAT . 
K 4 HOH A 166 328 166 HOH WAT . 
K 4 HOH A 167 329 167 HOH WAT . 
K 4 HOH A 168 330 168 HOH WAT . 
K 4 HOH A 169 331 169 HOH WAT . 
K 4 HOH A 170 332 170 HOH WAT . 
K 4 HOH A 171 333 171 HOH WAT . 
K 4 HOH A 172 334 172 HOH WAT . 
K 4 HOH A 173 335 173 HOH WAT . 
K 4 HOH A 174 336 174 HOH WAT . 
K 4 HOH A 175 337 175 HOH WAT . 
K 4 HOH A 176 338 176 HOH WAT . 
K 4 HOH A 177 339 177 HOH WAT . 
K 4 HOH A 178 340 178 HOH WAT . 
K 4 HOH A 179 341 179 HOH WAT . 
K 4 HOH A 180 342 180 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 3 41.355 43.402 83.276 1 58.78 ? C1 GOL 306 A 1 
HETATM 2 O O1 GOL . . . F 3 41.333 43.927 84.605 1 57.33 ? O1 GOL 306 A 1 
HETATM 3 C C2 GOL . . . F 3 42.727 43.579 82.619 1 59.08 ? C2 GOL 306 A 1 
HETATM 4 O O2 GOL . . . F 3 43.728 42.899 83.38 1 60.15 ? O2 GOL 306 A 1 
HETATM 5 C C3 GOL . . . F 3 42.666 42.962 81.22 1 59.32 ? C3 GOL 306 A 1 
HETATM 6 O O3 GOL . . . F 3 43.961 42.955 80.615 1 58.79 ? O3 GOL 306 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#