data_3PVL # _model_server_result.job_id n5MIJkIBxx0gIH5Ju-Ed1Q _model_server_result.datetime_utc '2024-11-03 10:26:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pvl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":10}' # _entry.id 3PVL # _exptl.entry_id 3PVL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PVL _cell.length_a 98.864 _cell.length_b 98.864 _cell.length_c 242.278 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PVL _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 M N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 273 n n P O2 PO4 sing 274 n n P O3 PO4 sing 275 n n P O4 PO4 sing 276 n n # _atom_sites.entry_id 3PVL _atom_sites.fract_transf_matrix[1][1] 0.010115 _atom_sites.fract_transf_matrix[1][2] 0.00584 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 1 1 GOL GOL . D 3 GOL A 1 2 2 GOL GOL . E 3 GOL A 1 3 3 GOL GOL . F 3 GOL A 1 4 4 GOL GOL . G 3 GOL A 1 5 5 GOL GOL . H 3 GOL A 1 7 7 GOL GOL . I 3 GOL A 1 8 8 GOL GOL . J 3 GOL A 1 9 9 GOL GOL . K 4 PO4 A 1 11 11 PO4 PO4 . L 3 GOL B 1 6 6 GOL GOL . M 4 PO4 B 1 10 10 PO4 PO4 . N 5 HOH A 1 12 12 HOH HOH . N 5 HOH A 2 13 13 HOH HOH . N 5 HOH A 3 14 14 HOH HOH . N 5 HOH A 4 15 15 HOH HOH . N 5 HOH A 5 16 16 HOH HOH . N 5 HOH A 6 17 17 HOH HOH . N 5 HOH A 7 18 18 HOH HOH . N 5 HOH A 8 19 19 HOH HOH . N 5 HOH A 9 20 20 HOH HOH . N 5 HOH A 10 21 21 HOH HOH . N 5 HOH A 11 22 22 HOH HOH . N 5 HOH A 12 23 23 HOH HOH . N 5 HOH A 13 24 24 HOH HOH . N 5 HOH A 14 25 25 HOH HOH . N 5 HOH A 15 26 26 HOH HOH . N 5 HOH A 16 27 27 HOH HOH . N 5 HOH A 17 28 28 HOH HOH . N 5 HOH A 18 29 29 HOH HOH . N 5 HOH A 19 30 30 HOH HOH . N 5 HOH A 20 31 31 HOH HOH . N 5 HOH A 21 32 32 HOH HOH . N 5 HOH A 22 33 33 HOH HOH . N 5 HOH A 23 34 34 HOH HOH . N 5 HOH A 24 35 35 HOH HOH . N 5 HOH A 25 36 36 HOH HOH . N 5 HOH A 26 37 37 HOH HOH . N 5 HOH A 27 38 38 HOH HOH . N 5 HOH A 28 39 39 HOH HOH . N 5 HOH A 29 40 40 HOH HOH . N 5 HOH A 30 41 41 HOH HOH . N 5 HOH A 31 42 42 HOH HOH . N 5 HOH A 32 43 43 HOH HOH . N 5 HOH A 33 44 44 HOH HOH . N 5 HOH A 34 45 45 HOH HOH . N 5 HOH A 35 46 46 HOH HOH . N 5 HOH A 36 47 47 HOH HOH . N 5 HOH A 37 48 48 HOH HOH . N 5 HOH A 38 49 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . M 4 -25.566 98.455 152.542 1 153.57 ? P PO4 10 B 1 HETATM 2 O O1 PO4 . . . M 4 -25.403 96.955 152.439 1 153.56 ? O1 PO4 10 B 1 HETATM 3 O O2 PO4 . . . M 4 -26.805 98.891 151.792 1 153.05 ? O2 PO4 10 B 1 HETATM 4 O O3 PO4 . . . M 4 -25.688 98.861 153.993 1 152.93 ? O3 PO4 10 B 1 HETATM 5 O O4 PO4 . . . M 4 -24.353 99.12 151.937 1 154.59 ? O4 PO4 10 B 1 # _model_server_stats.io_time_ms 115 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #