data_3PVL
#
_model_server_result.job_id            lVm4Ote8q5ADBNyVvUmNoA 
_model_server_result.datetime_utc      '2024-11-14 17:32:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pvl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":6}' 
#
_entry.id    3PVL 
#
_exptl.entry_id    3PVL 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3PVL 
_cell.length_a            98.864 
_cell.length_b            98.864 
_cell.length_c            242.278 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PVL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3PVL 
_atom_sites.fract_transf_matrix[1][1]    0.010115 
_atom_sites.fract_transf_matrix[1][2]    0.00584 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01168 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004127 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 1 1 GOL GOL . 
D 3 GOL A 1 2 2 GOL GOL . 
E 3 GOL A 1 3 3 GOL GOL . 
F 3 GOL A 1 4 4 GOL GOL . 
G 3 GOL A 1 5 5 GOL GOL . 
H 3 GOL A 1 7 7 GOL GOL . 
I 3 GOL A 1 8 8 GOL GOL . 
J 3 GOL A 1 9 9 GOL GOL . 
K 4 PO4 A 1 11 11 PO4 PO4 . 
L 3 GOL B 1 6 6 GOL GOL . 
M 4 PO4 B 1 10 10 PO4 PO4 . 
N 5 HOH A 1 12 12 HOH HOH . 
N 5 HOH A 2 13 13 HOH HOH . 
N 5 HOH A 3 14 14 HOH HOH . 
N 5 HOH A 4 15 15 HOH HOH . 
N 5 HOH A 5 16 16 HOH HOH . 
N 5 HOH A 6 17 17 HOH HOH . 
N 5 HOH A 7 18 18 HOH HOH . 
N 5 HOH A 8 19 19 HOH HOH . 
N 5 HOH A 9 20 20 HOH HOH . 
N 5 HOH A 10 21 21 HOH HOH . 
N 5 HOH A 11 22 22 HOH HOH . 
N 5 HOH A 12 23 23 HOH HOH . 
N 5 HOH A 13 24 24 HOH HOH . 
N 5 HOH A 14 25 25 HOH HOH . 
N 5 HOH A 15 26 26 HOH HOH . 
N 5 HOH A 16 27 27 HOH HOH . 
N 5 HOH A 17 28 28 HOH HOH . 
N 5 HOH A 18 29 29 HOH HOH . 
N 5 HOH A 19 30 30 HOH HOH . 
N 5 HOH A 20 31 31 HOH HOH . 
N 5 HOH A 21 32 32 HOH HOH . 
N 5 HOH A 22 33 33 HOH HOH . 
N 5 HOH A 23 34 34 HOH HOH . 
N 5 HOH A 24 35 35 HOH HOH . 
N 5 HOH A 25 36 36 HOH HOH . 
N 5 HOH A 26 37 37 HOH HOH . 
N 5 HOH A 27 38 38 HOH HOH . 
N 5 HOH A 28 39 39 HOH HOH . 
N 5 HOH A 29 40 40 HOH HOH . 
N 5 HOH A 30 41 41 HOH HOH . 
N 5 HOH A 31 42 42 HOH HOH . 
N 5 HOH A 32 43 43 HOH HOH . 
N 5 HOH A 33 44 44 HOH HOH . 
N 5 HOH A 34 45 45 HOH HOH . 
N 5 HOH A 35 46 46 HOH HOH . 
N 5 HOH A 36 47 47 HOH HOH . 
N 5 HOH A 37 48 48 HOH HOH . 
N 5 HOH A 38 49 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . L 3 -28.193 100.917 146.603 1 94.69 ? C1 GOL 6 B 1 
HETATM 2 O O1 GOL . . . L 3 -26.922 101.512 146.428 1 90.45 ? O1 GOL 6 B 1 
HETATM 3 C C2 GOL . . . L 3 -28.767 101.289 147.97 1 97.07 ? C2 GOL 6 B 1 
HETATM 4 O O2 GOL . . . L 3 -28.035 100.636 148.982 1 98.37 ? O2 GOL 6 B 1 
HETATM 5 C C3 GOL . . . L 3 -30.232 100.87 148.065 1 96.82 ? C3 GOL 6 B 1 
HETATM 6 O O3 GOL . . . L 3 -31.032 102.011 148.295 1 93.01 ? O3 GOL 6 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           222 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#