data_3PVU # _model_server_result.job_id -urWl67v1pWa4p2TVaQaWw _model_server_result.datetime_utc '2025-02-05 12:49:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pvu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":800}' # _entry.id 3PVU # _exptl.entry_id 3PVU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.458 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-({[4-methyl-5-(pyridin-4-yl)-4H-1,2,4-triazol-3-yl]methyl}amino)-N-[2-(trifluoromethyl)benzyl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.1 _cell.angle_gamma 90 _cell.entry_id 3PVU _cell.length_a 186.504 _cell.length_b 73.502 _cell.length_c 121.993 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PVU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id PHE _struct_conn.ptnr1_label_seq_id 73 _struct_conn.ptnr1_auth_asym_id G _struct_conn.ptnr1_auth_comp_id PHE _struct_conn.ptnr1_auth_seq_id 67 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id CMT _struct_conn.ptnr2_label_seq_id 74 _struct_conn.ptnr2_auth_asym_id G _struct_conn.ptnr2_auth_comp_id CMT _struct_conn.ptnr2_auth_seq_id 68 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.273 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H21 F3 N6 O' _chem_comp.formula_weight 466.458 _chem_comp.id QRW _chem_comp.mon_nstd_flag . _chem_comp.name 3-({[4-methyl-5-(pyridin-4-yl)-4H-1,2,4-triazol-3-yl]methyl}amino)-N-[2-(trifluoromethyl)benzyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 QRW doub 293 n y C1 C6 QRW sing 294 n y C1 C7 QRW sing 295 n y C2 C3 QRW sing 296 n y C3 N4 QRW doub 297 n y N4 C5 QRW sing 298 n y C5 C6 QRW doub 299 n y C7 N8 QRW doub 300 n y C7 N11 QRW sing 301 n y N8 N9 QRW sing 302 n y N9 C10 QRW doub 303 n y C10 N11 QRW sing 304 n y C10 C13 QRW sing 305 n n N11 C12 QRW sing 306 n n C13 N14 QRW sing 307 n n N14 C15 QRW sing 308 n n C15 C16 QRW doub 309 n y C15 C20 QRW sing 310 n y C16 C17 QRW sing 311 n y C17 C18 QRW doub 312 n y C18 C19 QRW sing 313 n y C19 C20 QRW doub 314 n y C19 C21 QRW sing 315 n n C21 O22 QRW doub 316 n n C21 N23 QRW sing 317 n n N23 C24 QRW sing 318 n n C24 C25 QRW sing 319 n n C25 C26 QRW doub 320 n y C25 C30 QRW sing 321 n y C26 C27 QRW sing 322 n y C26 C31 QRW sing 323 n n C27 C28 QRW doub 324 n y C28 C29 QRW sing 325 n y C29 C30 QRW doub 326 n y C31 F32 QRW sing 327 n n C31 F33 QRW sing 328 n n C31 F34 QRW sing 329 n n C2 H2 QRW sing 330 n n C3 H3 QRW sing 331 n n C5 H5 QRW sing 332 n n C6 H6 QRW sing 333 n n C12 H12 QRW sing 334 n n C12 H12A QRW sing 335 n n C12 H12B QRW sing 336 n n C13 H13 QRW sing 337 n n C13 H13A QRW sing 338 n n N14 HN14 QRW sing 339 n n C16 H16 QRW sing 340 n n C17 H17 QRW sing 341 n n C18 H18 QRW sing 342 n n C20 H20 QRW sing 343 n n N23 HN23 QRW sing 344 n n C24 H24 QRW sing 345 n n C24 H24A QRW sing 346 n n C27 H27 QRW sing 347 n n C28 H28 QRW sing 348 n n C29 H29 QRW sing 349 n n C30 H30 QRW sing 350 n n # _atom_sites.entry_id 3PVU _atom_sites.fract_transf_matrix[1][1] 0.005362 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002512 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013605 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 QRW A 1 800 800 QRW QRW . E 5 HOH A 1 696 695 HOH HOH . E 5 HOH A 2 698 698 HOH HOH . E 5 HOH A 3 702 702 HOH HOH . E 5 HOH A 4 703 703 HOH HOH . E 5 HOH A 5 704 704 HOH HOH . E 5 HOH A 6 705 705 HOH HOH . E 5 HOH A 7 706 706 HOH HOH . E 5 HOH A 8 707 707 HOH HOH . F 5 HOH B 1 341 341 HOH HOH . F 5 HOH B 2 343 343 HOH HOH . F 5 HOH B 3 346 346 HOH HOH . F 5 HOH B 4 347 347 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 QRW . . . D 4 36.727 -2.333 50.365 1 79.4 ? C1 QRW 800 A 1 HETATM 2 C C2 QRW . . . D 4 35.359 -2.242 50.102 1 79.87 ? C2 QRW 800 A 1 HETATM 3 C C3 QRW . . . D 4 34.806 -1.003 49.754 1 80.01 ? C3 QRW 800 A 1 HETATM 4 N N4 QRW . . . D 4 35.569 0.089 49.678 1 79.66 ? N4 QRW 800 A 1 HETATM 5 C C5 QRW . . . D 4 36.876 0.032 49.929 1 79.73 ? C5 QRW 800 A 1 HETATM 6 C C6 QRW . . . D 4 37.497 -1.176 50.276 1 79.57 ? C6 QRW 800 A 1 HETATM 7 C C7 QRW . . . D 4 37.325 -3.538 50.72 1 79.6 ? C7 QRW 800 A 1 HETATM 8 N N8 QRW . . . D 4 38.187 -3.69 51.716 1 79.97 ? N8 QRW 800 A 1 HETATM 9 N N9 QRW . . . D 4 38.554 -4.868 51.788 1 80.85 ? N9 QRW 800 A 1 HETATM 10 C C10 QRW . . . D 4 37.949 -5.59 50.844 1 80.74 ? C10 QRW 800 A 1 HETATM 11 N N11 QRW . . . D 4 37.182 -4.747 50.177 1 80.24 ? N11 QRW 800 A 1 HETATM 12 C C12 QRW . . . D 4 36.321 -5.119 49.031 1 78.97 ? C12 QRW 800 A 1 HETATM 13 C C13 QRW . . . D 4 38.109 -7.094 50.587 1 81.45 ? C13 QRW 800 A 1 HETATM 14 N N14 QRW . . . D 4 38.785 -7.756 51.719 1 82.27 ? N14 QRW 800 A 1 HETATM 15 C C15 QRW . . . D 4 38.213 -7.973 52.914 1 83.47 ? C15 QRW 800 A 1 HETATM 16 C C16 QRW . . . D 4 36.955 -7.465 53.263 1 84.04 ? C16 QRW 800 A 1 HETATM 17 C C17 QRW . . . D 4 36.416 -7.729 54.527 1 84.29 ? C17 QRW 800 A 1 HETATM 18 C C18 QRW . . . D 4 37.131 -8.499 55.45 1 84.68 ? C18 QRW 800 A 1 HETATM 19 C C19 QRW . . . D 4 38.385 -8.997 55.108 1 85.25 ? C19 QRW 800 A 1 HETATM 20 C C20 QRW . . . D 4 38.907 -8.74 53.841 1 84.02 ? C20 QRW 800 A 1 HETATM 21 C C21 QRW . . . D 4 39.204 -9.851 56.082 1 88.11 ? C21 QRW 800 A 1 HETATM 22 O O22 QRW . . . D 4 38.64 -10.576 56.9 1 87.85 ? O22 QRW 800 A 1 HETATM 23 N N23 QRW . . . D 4 40.536 -9.753 55.924 1 91.15 ? N23 QRW 800 A 1 HETATM 24 C C24 QRW . . . D 4 41.534 -10.543 56.665 1 93.02 ? C24 QRW 800 A 1 HETATM 25 C C25 QRW . . . D 4 41.69 -11.877 55.905 1 96.47 ? C25 QRW 800 A 1 HETATM 26 C C26 QRW . . . D 4 42.657 -12.205 54.927 1 98.41 ? C26 QRW 800 A 1 HETATM 27 C C27 QRW . . . D 4 42.628 -13.477 54.33 1 98.82 ? C27 QRW 800 A 1 HETATM 28 C C28 QRW . . . D 4 41.672 -14.43 54.676 1 98.48 ? C28 QRW 800 A 1 HETATM 29 C C29 QRW . . . D 4 40.717 -14.112 55.633 1 98.18 ? C29 QRW 800 A 1 HETATM 30 C C30 QRW . . . D 4 40.738 -12.851 56.228 1 97.47 ? C30 QRW 800 A 1 HETATM 31 C C31 QRW . . . D 4 43.768 -11.222 54.45 1 99.63 ? C31 QRW 800 A 1 HETATM 32 F F32 QRW . . . D 4 44.903 -11.889 54.155 1 99.4 ? F32 QRW 800 A 1 HETATM 33 F F33 QRW . . . D 4 44.046 -10.302 55.385 1 100.22 ? F33 QRW 800 A 1 HETATM 34 F F34 QRW . . . D 4 43.33 -10.623 53.323 1 100.03 ? F34 QRW 800 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 34 #